RNA–Protein interactions for RNA: ENST00000559100.1

GABPB1-209, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 3

Gene GABPB1, Length 290 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-209ENST00000559100 CDKN2AIPQ9NXV6 580 aaPredicted RBP3.88□□□□□ -1.79
GABPB1-209ENST00000559100 TFIP11Q9UBB9 837 aaKnown RBP3.88□□□□□ -1.79
GABPB1-209ENST00000559100 K7ELQ4 463 aaPredicted RBP3.87□□□□□ -1.79
GABPB1-209ENST00000559100 BRD1O95696 1058 aa3.87□□□□□ -1.79
GABPB1-209ENST00000559100 SOX11P35716 441 aa3.87□□□□□ -1.79
GABPB1-209ENST00000559100 ATP6V1AP38606 617 aa3.87□□□□□ -1.79
GABPB1-209ENST00000559100 MFAP1P55081 439 aaKnown RBP3.87□□□□□ -1.79
GABPB1-209ENST00000559100 EIF4G2P78344 907 aaKnown RBP eCLIP3.87□□□□□ -1.79
GABPB1-209ENST00000559100 KMT5BQ4FZB7 885 aa3.87□□□□□ -1.79
GABPB1-209ENST00000559100 CFAP70Q5T0N1 1121 aa3.87□□□□□ -1.79
GABPB1-209ENST00000559100 ATP13A2Q9NQ11 1180 aa3.87□□□□□ -1.79
GABPB1-209ENST00000559100 MTMR7Q9Y216 660 aa3.87□□□□□ -1.79
GABPB1-209ENST00000559100 USTQ9Y2C2 406 aa3.87□□□□□ -1.79
GABPB1-209ENST00000559100 MSTNO14793 375 aa3.86□□□□□ -1.79
GABPB1-209ENST00000559100 RBM25P49756 843 aaKnown RBP3.86□□□□□ -1.79
GABPB1-209ENST00000559100 SMCPP49901 116 aaPredicted RBP3.86□□□□□ -1.79
GABPB1-209ENST00000559100 KCNA1Q09470 495 aa3.86□□□□□ -1.79
GABPB1-209ENST00000559100 Q3C1V9 767 aa3.86□□□□□ -1.79
GABPB1-209ENST00000559100 LRCH3Q96II8 777 aa3.86□□□□□ -1.79
GABPB1-209ENST00000559100 CARNS1A5YM72 827 aa3.85□□□□□ -1.79
GABPB1-209ENST00000559100 PER1O15534 1290 aaPredicted RBP3.85□□□□□ -1.79
GABPB1-209ENST00000559100 IRS1P35568 1242 aa3.85□□□□□ -1.79
GABPB1-209ENST00000559100 PUS10Q3MIT2 529 aaKnown RBP3.85□□□□□ -1.79
GABPB1-209ENST00000559100 FOXD4L5Q5VV16 416 aaPredicted RBP3.85□□□□□ -1.79
GABPB1-209ENST00000559100 RETREG3Q86VR2 466 aa3.85□□□□□ -1.79
GABPB1-209ENST00000559100 NPAS3Q8IXF0 933 aa3.85□□□□□ -1.79
GABPB1-209ENST00000559100 FOXD4L4Q8WXT5 416 aaPredicted RBP3.85□□□□□ -1.79
GABPB1-209ENST00000559100 ALG2Q9H553 416 aa3.85□□□□□ -1.79
GABPB1-209ENST00000559100 H3BM21 787 aa3.84□□□□□ -1.79
GABPB1-209ENST00000559100 GPR37L1O60883 481 aa3.84□□□□□ -1.79
GABPB1-209ENST00000559100 RGS22Q8NE09 1264 aa3.84□□□□□ -1.79
GABPB1-209ENST00000559100 UCN2Q96RP3 112 aa3.84□□□□□ -1.79
GABPB1-209ENST00000559100 VRTNQ9H8Y1 702 aa3.84□□□□□ -1.79
GABPB1-209ENST00000559100 MAFBQ9Y5Q3 323 aaPredicted RBP3.84□□□□□ -1.79
GABPB1-209ENST00000559100 ATP9BO43861 1147 aa3.83□□□□□ -1.8
GABPB1-209ENST00000559100 CTHP32929 405 aa3.83□□□□□ -1.8
GABPB1-209ENST00000559100 NR1H3Q13133 447 aa3.83□□□□□ -1.8
GABPB1-209ENST00000559100 CCDC27Q2M243 656 aa3.83□□□□□ -1.8
GABPB1-209ENST00000559100 B4GALNT3Q6L9W6 998 aa3.83□□□□□ -1.8
GABPB1-209ENST00000559100 TBC1D9Q6ZT07 1266 aa3.83□□□□□ -1.8
GABPB1-209ENST00000559100 PRR14Q9BWN1 585 aa3.83□□□□□ -1.8
GABPB1-209ENST00000559100 ADAMTS8Q9UP79 889 aa3.83□□□□□ -1.8
GABPB1-209ENST00000559100 SLC27A5Q9Y2P5 690 aa3.83□□□□□ -1.8
GABPB1-209ENST00000559100 IVNS1ABPQ9Y6Y0 642 aa3.83□□□□□ -1.8
GABPB1-209ENST00000559100 ZBBXA8MT70 800 aa3.82□□□□□ -1.8
GABPB1-209ENST00000559100 ATG7O95352 703 aa3.82□□□□□ -1.8
GABPB1-209ENST00000559100 FBXO45P0C2W1 286 aa3.82□□□□□ -1.8
GABPB1-209ENST00000559100 SKIP12755 728 aa3.82□□□□□ -1.8
GABPB1-209ENST00000559100 PPP4CP60510 307 aa3.82□□□□□ -1.8
GABPB1-209ENST00000559100 MORN1Q5T089 497 aa3.82□□□□□ -1.8
GABPB1-209ENST00000559100 KIFC2Q96AC6 838 aa3.82□□□□□ -1.8
GABPB1-209ENST00000559100 SPOCK3Q9BQ16 436 aa3.82□□□□□ -1.8
GABPB1-209ENST00000559100 USB1Q9BQ65 265 aaKnown RBP3.82□□□□□ -1.8
GABPB1-209ENST00000559100 FKBPLQ9UIM3 349 aa3.82□□□□□ -1.8
GABPB1-209ENST00000559100 SLFNL1Q499Z3 407 aa3.81□□□□□ -1.8
GABPB1-209ENST00000559100 DESI1Q6ICB0 168 aa3.81□□□□□ -1.8
GABPB1-209ENST00000559100 LYPD8Q6UX82 237 aa3.81□□□□□ -1.8
GABPB1-209ENST00000559100 DEPDC4Q8N2C3 294 aa3.81□□□□□ -1.8
GABPB1-209ENST00000559100 USP17L3A6NCW0 530 aa3.8□□□□□ -1.8
GABPB1-209ENST00000559100 USP17L4A6NCW7 530 aa3.8□□□□□ -1.8
GABPB1-209ENST00000559100 RNF223E7ERA6 249 aa3.8□□□□□ -1.8
GABPB1-209ENST00000559100 PIK3CDO00329 1044 aa3.8□□□□□ -1.8
GABPB1-209ENST00000559100 ACTN4O43707 911 aaKnown RBP3.8□□□□□ -1.8
GABPB1-209ENST00000559100 NR1I2O75469 434 aa3.8□□□□□ -1.8
GABPB1-209ENST00000559100 FMNL1O95466 1100 aaPredicted RBP3.8□□□□□ -1.8
GABPB1-209ENST00000559100 SRPK2P78362 688 aaKnown RBP3.8□□□□□ -1.8
GABPB1-209ENST00000559100 LARP1Q6PKG0 1096 aaKnown RBP3.8□□□□□ -1.8
GABPB1-209ENST00000559100 BLOC1S3Q6QNY0 202 aa3.8□□□□□ -1.8
GABPB1-209ENST00000559100 USP17L2Q6R6M4 530 aa3.8□□□□□ -1.8
GABPB1-209ENST00000559100 RNF19BQ6ZMZ0 732 aa3.8□□□□□ -1.8
GABPB1-209ENST00000559100 LIAT1Q6ZQX7 453 aa3.8□□□□□ -1.8
GABPB1-209ENST00000559100 SND1Q7KZF4 910 aaKnown RBP eCLIP3.8□□□□□ -1.8
GABPB1-209ENST00000559100 USP17L1Q7RTZ2 530 aa3.8□□□□□ -1.8
GABPB1-209ENST00000559100 ZNF428Q96B54 188 aa3.8□□□□□ -1.8
GABPB1-209ENST00000559100 MAP10Q9P2G4 905 aa3.8□□□□□ -1.8
GABPB1-209ENST00000559100 NOVA2Q9UNW9 492 aaKnown RBP3.8□□□□□ -1.8
GABPB1-209ENST00000559100 PCDHB9Q9Y5E1 797 aa3.8□□□□□ -1.8
GABPB1-209ENST00000559100 TMEM88BA6NKF7 163 aa3.79□□□□□ -1.8
GABPB1-209ENST00000559100 USP17L5A8MUK1 530 aa3.79□□□□□ -1.8
GABPB1-209ENST00000559100 E9PSI1 815 aa3.79□□□□□ -1.8
GABPB1-209ENST00000559100 RASA1P20936 1047 aa3.79□□□□□ -1.8
GABPB1-209ENST00000559100 PTK2Q05397 1052 aa3.79□□□□□ -1.8
GABPB1-209ENST00000559100 FOXC1Q12948 553 aa3.79□□□□□ -1.8
GABPB1-209ENST00000559100 RNF135Q8IUD6 432 aa3.79□□□□□ -1.8
GABPB1-209ENST00000559100 NFATC2IPQ8NCF5 419 aa3.79□□□□□ -1.8
GABPB1-209ENST00000559100 CCER1Q8TC90 406 aaPredicted RBP3.79□□□□□ -1.8
GABPB1-209ENST00000559100 STK32AQ8WU08 396 aa3.79□□□□□ -1.8
GABPB1-209ENST00000559100 ZNF592Q92610 1267 aa3.79□□□□□ -1.8
GABPB1-209ENST00000559100 PCDHB3Q9Y5E6 796 aa3.79□□□□□ -1.8
GABPB1-209ENST00000559100 ZC3H4Q9UPT8 1303 aaKnown RBP3.78□□□□□ -1.8
GABPB1-209ENST00000559100 JUNDP17535 347 aa3.78□□□□□ -1.8
GABPB1-209ENST00000559100 PTPRNQ16849 979 aa3.78□□□□□ -1.8
GABPB1-209ENST00000559100 KANK4Q5T7N3 995 aaPredicted RBP3.78□□□□□ -1.8
GABPB1-209ENST00000559100 TMEM164Q5U3C3 297 aa3.78□□□□□ -1.8
GABPB1-209ENST00000559100 KANK3Q6NY19 840 aa3.78□□□□□ -1.8
GABPB1-209ENST00000559100 BRICD5Q6PL45 260 aa3.78□□□□□ -1.8
GABPB1-209ENST00000559100 SCUBE3Q8IX30 993 aa3.78□□□□□ -1.8
GABPB1-209ENST00000559100 GALNT6Q8NCL4 622 aa3.78□□□□□ -1.8
GABPB1-209ENST00000559100 ARMC2Q8NEN0 867 aa3.78□□□□□ -1.8
GABPB1-209ENST00000559100 FAM200AQ8TCP9 573 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms