RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-223ENST00000557076 UBAP1LF5GYI3 381 aa8.11□□□□□ -1.11
SCFD1-223ENST00000557076 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.11□□□□□ -1.11
SCFD1-223ENST00000557076 RETREG3Q86VR2 466 aa8.11□□□□□ -1.11
SCFD1-223ENST00000557076 C11orf95C9JLR9 678 aaPredicted RBP8.1□□□□□ -1.11
SCFD1-223ENST00000557076 GUCA2AQ02747 115 aa8.1□□□□□ -1.11
SCFD1-223ENST00000557076 TREML4Q6UXN2 200 aa8.1□□□□□ -1.11
SCFD1-223ENST00000557076 GMPR2Q9P2T1 348 aaKnown RBP8.1□□□□□ -1.11
SCFD1-223ENST00000557076 RIMS1Q86UR5 1692 aaKnown RBP8.1□□□□□ -1.11
SCFD1-223ENST00000557076 RC3H1Q5TC82 1133 aaKnown RBP8.09□□□□□ -1.11
SCFD1-223ENST00000557076 UHRF1BP1Q6BDS2 1440 aa8.09□□□□□ -1.11
SCFD1-223ENST00000557076 J3QL48 77 aa8.08□□□□□ -1.12
SCFD1-223ENST00000557076 NUDT12Q9BQG2 462 aa8.08□□□□□ -1.12
SCFD1-223ENST00000557076 FRMPD1Q5SYB0 1578 aa8.08□□□□□ -1.12
SCFD1-223ENST00000557076 LTBP4Q8N2S1 1624 aa8.07□□□□□ -1.12
SCFD1-223ENST00000557076 ATP10AO60312 1499 aa8.07□□□□□ -1.12
SCFD1-223ENST00000557076 FDX1P10109 184 aa8.07□□□□□ -1.12
SCFD1-223ENST00000557076 SKOR1P84550 965 aa8.07□□□□□ -1.12
SCFD1-223ENST00000557076 SYMPKQ92797 1274 aaKnown RBP8.07□□□□□ -1.12
SCFD1-223ENST00000557076 ARHGEF40Q8TER5 1519 aa8.07□□□□□ -1.12
SCFD1-223ENST00000557076 SSTR3P32745 418 aaPredicted RBP8.06□□□□□ -1.12
SCFD1-223ENST00000557076 SENP2Q9HC62 589 aa8.06□□□□□ -1.12
SCFD1-223ENST00000557076 ATP13A2Q9NQ11 1180 aa8.06□□□□□ -1.12
SCFD1-223ENST00000557076 STRCQ7RTU9 1775 aa8.06□□□□□ -1.12
SCFD1-223ENST00000557076 SCAPERQ9BY12 1400 aa8.05□□□□□ -1.12
SCFD1-223ENST00000557076 TRAPPC8Q9Y2L5 1435 aa8.05□□□□□ -1.12
SCFD1-223ENST00000557076 ARHGEF12Q9NZN5 1544 aa8.05□□□□□ -1.12
SCFD1-223ENST00000557076 C6orf229H3BNL8 230 aa8.05□□□□□ -1.12
SCFD1-223ENST00000557076 HSPA1LP34931 641 aa8.05□□□□□ -1.12
SCFD1-223ENST00000557076 LCE2AQ5TA79 106 aaPredicted RBP8.05□□□□□ -1.12
SCFD1-223ENST00000557076 EFCAB2Q5VUJ9 269 aa8.05□□□□□ -1.12
SCFD1-223ENST00000557076 ESF1Q9H501 851 aaKnown RBP8.05□□□□□ -1.12
SCFD1-223ENST00000557076 TTC37Q6PGP7 1564 aa8.05□□□□□ -1.12
SCFD1-223ENST00000557076 EFCAB5A4FU69 1503 aa8.04□□□□□ -1.12
SCFD1-223ENST00000557076 ZMYM4Q5VZL5 1548 aa8.04□□□□□ -1.12
SCFD1-223ENST00000557076 ZFYVE16Q7Z3T8 1539 aa8.04□□□□□ -1.12
SCFD1-223ENST00000557076 TOM1O60784 492 aa8.04□□□□□ -1.12
SCFD1-223ENST00000557076 MS4A1P11836 297 aa8.04□□□□□ -1.12
SCFD1-223ENST00000557076 TTLL12Q14166 644 aaPredicted RBP8.04□□□□□ -1.12
SCFD1-223ENST00000557076 AMHR2Q16671 573 aa8.04□□□□□ -1.12
SCFD1-223ENST00000557076 BARGINQ6ZT62 677 aa8.04□□□□□ -1.12
SCFD1-223ENST00000557076 PCDHGC3Q9UN70 934 aa8.04□□□□□ -1.12
SCFD1-223ENST00000557076 ZNF335Q9H4Z2 1342 aaPredicted RBP8.03□□□□□ -1.12
SCFD1-223ENST00000557076 WFS1O76024 890 aa8.03□□□□□ -1.12
SCFD1-223ENST00000557076 CCNYL3P0C7X3 344 aa8.03□□□□□ -1.12
SCFD1-223ENST00000557076 PTPRNQ16849 979 aa8.03□□□□□ -1.12
SCFD1-223ENST00000557076 AFAP1Q8N556 730 aa8.03□□□□□ -1.12
SCFD1-223ENST00000557076 EHBP1Q8NDI1 1231 aa8.03□□□□□ -1.12
SCFD1-223ENST00000557076 SPIRE2Q8WWL2 714 aa8.03□□□□□ -1.12
SCFD1-223ENST00000557076 HPS1Q92902 700 aa8.03□□□□□ -1.12
SCFD1-223ENST00000557076 KIFC2Q96AC6 838 aa8.03□□□□□ -1.12
SCFD1-223ENST00000557076 PLCH2O75038 1416 aa8.03□□□□□ -1.12
SCFD1-223ENST00000557076 NCOA1Q15788 1441 aa8.03□□□□□ -1.12
SCFD1-223ENST00000557076 C9orf84Q5VXU9 1444 aa8.03□□□□□ -1.12
SCFD1-223ENST00000557076 PRXQ9BXM0 1461 aa8.02□□□□□ -1.13
SCFD1-223ENST00000557076 SPDYE5A6NIY4 337 aa8.02□□□□□ -1.13
SCFD1-223ENST00000557076 ZMYND10O75800 440 aa8.02□□□□□ -1.13
SCFD1-223ENST00000557076 ALDH1A1P00352 501 aa8.02□□□□□ -1.13
SCFD1-223ENST00000557076 TRIM47Q96LD4 638 aa8.02□□□□□ -1.13
SCFD1-223ENST00000557076 RICTORQ6R327 1708 aa8.01□□□□□ -1.13
SCFD1-223ENST00000557076 PTCRAQ6ISU1 281 aaPredicted RBP8.01□□□□□ -1.13
SCFD1-223ENST00000557076 NUP153P49790 1475 aaKnown RBP8□□□□□ -1.13
SCFD1-223ENST00000557076 PREX1Q8TCU6 1659 aa8□□□□□ -1.13
SCFD1-223ENST00000557076 SIAH2O43255 324 aa8□□□□□ -1.13
SCFD1-223ENST00000557076 MTMR2Q13614 643 aa8□□□□□ -1.13
SCFD1-223ENST00000557076 DIXDC1Q155Q3 683 aa8□□□□□ -1.13
SCFD1-223ENST00000557076 DESI1Q6ICB0 168 aa8□□□□□ -1.13
SCFD1-223ENST00000557076 GIGYF2Q6Y7W6 1299 aaKnown RBP8□□□□□ -1.13
SCFD1-223ENST00000557076 MOXD2PA6NHM9 499 aa7.99□□□□□ -1.13
SCFD1-223ENST00000557076 GJA5P36382 358 aa7.99□□□□□ -1.13
SCFD1-223ENST00000557076 PIP4K2BP78356 416 aa7.99□□□□□ -1.13
SCFD1-223ENST00000557076 NFX1Q12986 1120 aaKnown RBP7.99□□□□□ -1.13
SCFD1-223ENST00000557076 ZC3H15Q8WU90 426 aaKnown RBP7.99□□□□□ -1.13
SCFD1-223ENST00000557076 EVA1BQ9NVM1 165 aa7.99□□□□□ -1.13
SCFD1-223ENST00000557076 WASF2Q9Y6W5 498 aa7.99□□□□□ -1.13
SCFD1-223ENST00000557076 HECW1Q76N89 1606 aa7.99□□□□□ -1.13
SCFD1-223ENST00000557076 SIGLEC1Q9BZZ2 1709 aa7.98□□□□□ -1.13
SCFD1-223ENST00000557076 NDUFV2P19404 249 aa7.98□□□□□ -1.13
SCFD1-223ENST00000557076 SH3BP2P78314 561 aa7.98□□□□□ -1.13
SCFD1-223ENST00000557076 PRR7Q8TB68 274 aa7.98□□□□□ -1.13
SCFD1-223ENST00000557076 UNC93B1Q9H1C4 597 aa7.98□□□□□ -1.13
SCFD1-223ENST00000557076 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.98□□□□□ -1.13
SCFD1-223ENST00000557076 SNRPBP14678 240 aaKnown RBP7.97□□□□□ -1.13
SCFD1-223ENST00000557076 KCNH2Q12809 1159 aa7.97□□□□□ -1.13
SCFD1-223ENST00000557076 BEGAINQ9BUH8 593 aa7.97□□□□□ -1.13
SCFD1-223ENST00000557076 FER1L4A9Z1Z3 1794 aa7.97□□□□□ -1.13
SCFD1-223ENST00000557076 ZMYM3Q14202 1370 aa7.97□□□□□ -1.13
SCFD1-223ENST00000557076 CNTLNQ9NXG0 1405 aa7.96□□□□□ -1.13
SCFD1-223ENST00000557076 WIPF1O43516 503 aa7.96□□□□□ -1.14
SCFD1-223ENST00000557076 CDK11AQ9UQ88 783 aaPredicted RBP7.96□□□□□ -1.14
SCFD1-223ENST00000557076 RAPGEF6Q8TEU7 1601 aa7.96□□□□□ -1.14
SCFD1-223ENST00000557076 NPATQ14207 1427 aa7.95□□□□□ -1.14
SCFD1-223ENST00000557076 TERTO14746 1132 aaKnown RBP7.95□□□□□ -1.14
SCFD1-223ENST00000557076 RGS17Q9UGC6 210 aaPredicted RBP7.95□□□□□ -1.14
SCFD1-223ENST00000557076 CFAP74Q9C0B2 1584 aa7.95□□□□□ -1.14
SCFD1-223ENST00000557076 ZNF518AQ6AHZ1 1483 aa7.94□□□□□ -1.14
SCFD1-223ENST00000557076 PLEKHG3A1L390 1219 aa7.94□□□□□ -1.14
SCFD1-223ENST00000557076 CAPN5O15484 640 aaPredicted RBP7.94□□□□□ -1.14
SCFD1-223ENST00000557076 VARSP26640 1264 aaKnown RBP7.94□□□□□ -1.14
SCFD1-223ENST00000557076 INSM1Q01101 510 aaPredicted RBP7.94□□□□□ -1.14
SCFD1-223ENST00000557076 MPNDQ8N594 471 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms