RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 EVA1CP58658 441 aa18.97■□□□□ 0.63
VIPAS39-208ENST00000556412 IP6K1Q92551 441 aa18.97■□□□□ 0.63
VIPAS39-208ENST00000556412 HSP90AB2PQ58FF8 381 aa18.97■□□□□ 0.63
VIPAS39-208ENST00000556412 USP21Q9UK80 565 aa18.97■□□□□ 0.63
VIPAS39-208ENST00000556412 FLT4P35916 1363 aa18.96■□□□□ 0.63
VIPAS39-208ENST00000556412 CSB-PGBD3P0DP91 1061 aa18.96■□□□□ 0.63
VIPAS39-208ENST00000556412 RTL1A6NKG5 1358 aa18.96■□□□□ 0.62
VIPAS39-208ENST00000556412 FNBP4Q8N3X1 1017 aaPredicted RBP18.95■□□□□ 0.62
VIPAS39-208ENST00000556412 ANKRD24Q8TF21 1146 aa18.94■□□□□ 0.62
VIPAS39-208ENST00000556412 CCDC9Q9Y3X0 531 aaKnown RBP18.94■□□□□ 0.62
VIPAS39-208ENST00000556412 MYBBP1AQ9BQG0 1328 aaKnown RBP18.94■□□□□ 0.62
VIPAS39-208ENST00000556412 SLIT2O94813 1529 aa18.94■□□□□ 0.62
VIPAS39-208ENST00000556412 UNC5CLQ8IV45 518 aa18.93■□□□□ 0.62
VIPAS39-208ENST00000556412 CAMTA1Q9Y6Y1 1673 aa18.93■□□□□ 0.62
VIPAS39-208ENST00000556412 KIF24Q5T7B8 1368 aa18.93■□□□□ 0.62
VIPAS39-208ENST00000556412 COL14A1Q05707 1796 aaKnown RBP18.93■□□□□ 0.62
VIPAS39-208ENST00000556412 BLMP54132 1417 aaPredicted RBP18.92■□□□□ 0.62
VIPAS39-208ENST00000556412 SMG6Q86US8 1419 aaKnown RBP18.92■□□□□ 0.62
VIPAS39-208ENST00000556412 BCL9LQ86UU0 1499 aa18.91■□□□□ 0.62
VIPAS39-208ENST00000556412 LARP1Q6PKG0 1096 aaKnown RBP18.91■□□□□ 0.62
VIPAS39-208ENST00000556412 CFAP53Q96M91 514 aa18.91■□□□□ 0.62
VIPAS39-208ENST00000556412 INSRP06213 1382 aa18.91■□□□□ 0.62
VIPAS39-208ENST00000556412 COL5A2P05997 1499 aaPredicted RBP18.91■□□□□ 0.62
VIPAS39-208ENST00000556412 ZNF772Q68DY9 489 aaPredicted RBP18.9■□□□□ 0.62
VIPAS39-208ENST00000556412 TOM1L2Q6ZVM7 507 aa18.9■□□□□ 0.62
VIPAS39-208ENST00000556412 USP35Q9P2H5 1018 aa18.9■□□□□ 0.62
VIPAS39-208ENST00000556412 ERBB3P21860 1342 aa18.9■□□□□ 0.62
VIPAS39-208ENST00000556412 NLRP2Q9NX02 1062 aa18.9■□□□□ 0.62
VIPAS39-208ENST00000556412 CDK12Q9NYV4 1490 aaPredicted RBP18.9■□□□□ 0.62
VIPAS39-208ENST00000556412 PEAK1Q9H792 1746 aa18.89■□□□□ 0.62
VIPAS39-208ENST00000556412 ABCC6O95255 1503 aa18.89■□□□□ 0.61
VIPAS39-208ENST00000556412 LMO7Q8WWI1 1683 aa18.89■□□□□ 0.61
VIPAS39-208ENST00000556412 LTN1O94822 1766 aa18.89■□□□□ 0.61
VIPAS39-208ENST00000556412 PLCH1Q4KWH8 1693 aa18.88■□□□□ 0.61
VIPAS39-208ENST00000556412 WDR17Q8IZU2 1322 aa18.88■□□□□ 0.61
VIPAS39-208ENST00000556412 EIF4A2Q14240 407 aaKnown RBP18.88■□□□□ 0.61
VIPAS39-208ENST00000556412 QTRT2Q9H974 415 aaKnown RBP18.88■□□□□ 0.61
VIPAS39-208ENST00000556412 TRPC5Q9UL62 973 aaPredicted RBP18.88■□□□□ 0.61
VIPAS39-208ENST00000556412 DIAPH1O60610 1272 aaKnown RBP18.86■□□□□ 0.61
VIPAS39-208ENST00000556412 VPS72Q15906 364 aa18.86■□□□□ 0.61
VIPAS39-208ENST00000556412 RGS17Q9UGC6 210 aaPredicted RBP18.86■□□□□ 0.61
VIPAS39-208ENST00000556412 COL18A1P39060 1754 aa18.85■□□□□ 0.61
VIPAS39-208ENST00000556412 USHBP1Q8N6Y0 703 aa18.85■□□□□ 0.61
VIPAS39-208ENST00000556412 U2SURPO15042 1029 aaKnown RBP18.84■□□□□ 0.61
VIPAS39-208ENST00000556412 CRB1P82279 1406 aa18.84■□□□□ 0.61
VIPAS39-208ENST00000556412 NBPF6Q5VWK0 638 aa18.84■□□□□ 0.61
VIPAS39-208ENST00000556412 NBPF4Q96M43 638 aa18.84■□□□□ 0.61
VIPAS39-208ENST00000556412 IL13P35225 146 aa18.83■□□□□ 0.6
VIPAS39-208ENST00000556412 GJD4Q96KN9 370 aaPredicted RBP18.83■□□□□ 0.6
VIPAS39-208ENST00000556412 ATRNO75882 1429 aa18.83■□□□□ 0.6
VIPAS39-208ENST00000556412 SPATA31A5Q5VU36 1347 aa18.82■□□□□ 0.6
VIPAS39-208ENST00000556412 SPATA31A7Q8IWB4 1347 aa18.82■□□□□ 0.6
VIPAS39-208ENST00000556412 NWD2Q9ULI1 1742 aa18.82■□□□□ 0.6
VIPAS39-208ENST00000556412 EYA1Q99502 592 aa18.82■□□□□ 0.6
VIPAS39-208ENST00000556412 MAP2P11137 1827 aaKnown RBP18.82■□□□□ 0.6
VIPAS39-208ENST00000556412 SPATA31A1Q5TZJ5 1347 aa18.82■□□□□ 0.6
VIPAS39-208ENST00000556412 A0A0G2JS52 829 aa18.81■□□□□ 0.6
VIPAS39-208ENST00000556412 MYT1Q01538 1121 aa18.81■□□□□ 0.6
VIPAS39-208ENST00000556412 POTEAQ6S8J7 498 aa18.81■□□□□ 0.6
VIPAS39-208ENST00000556412 CARD10Q9BWT7 1032 aa18.81■□□□□ 0.6
VIPAS39-208ENST00000556412 NUDCQ9Y266 331 aa18.81■□□□□ 0.6
VIPAS39-208ENST00000556412 NRAPQ86VF7 1730 aa18.81■□□□□ 0.6
VIPAS39-208ENST00000556412 TCP11L2Q8N4U5 519 aa18.81■□□□□ 0.6
VIPAS39-208ENST00000556412 MRS2Q9HD23 443 aa18.81■□□□□ 0.6
VIPAS39-208ENST00000556412 FAM98CQ17RN3 349 aaKnown RBP18.8■□□□□ 0.6
VIPAS39-208ENST00000556412 CCDC184Q52MB2 194 aa18.8■□□□□ 0.6
VIPAS39-208ENST00000556412 MIER1Q8N108 512 aa18.8■□□□□ 0.6
VIPAS39-208ENST00000556412 COL3A1P02461 1466 aaPredicted RBP18.8■□□□□ 0.6
VIPAS39-208ENST00000556412 RXRBP28702 533 aa18.79■□□□□ 0.6
VIPAS39-208ENST00000556412 HMOX1P09601 288 aa18.78■□□□□ 0.6
VIPAS39-208ENST00000556412 U2AF1L5P0DN76 240 aaPredicted RBP18.78■□□□□ 0.6
VIPAS39-208ENST00000556412 RBM6P78332 1123 aaKnown RBP18.78■□□□□ 0.6
VIPAS39-208ENST00000556412 U2AF1Q01081 240 aaKnown RBP eCLIP18.78■□□□□ 0.6
VIPAS39-208ENST00000556412 RGPD5Q99666 1765 aa18.77■□□□□ 0.6
VIPAS39-208ENST00000556412 SULT6B1Q6IMI4 303 aa18.77■□□□□ 0.6
VIPAS39-208ENST00000556412 IGSF1Q8N6C5 1336 aa18.77■□□□□ 0.6
VIPAS39-208ENST00000556412 AEBP1Q8IUX7 1158 aa18.77■□□□□ 0.59
VIPAS39-208ENST00000556412 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.76■□□□□ 0.59
VIPAS39-208ENST00000556412 WDR43Q15061 677 aaKnown RBP eCLIP18.76■□□□□ 0.59
VIPAS39-208ENST00000556412 RAPGEF4Q8WZA2 1011 aa18.76■□□□□ 0.59
VIPAS39-208ENST00000556412 THRAP3Q9Y2W1 955 aaKnown RBP18.76■□□□□ 0.59
VIPAS39-208ENST00000556412 IL2RBP14784 551 aa18.74■□□□□ 0.59
VIPAS39-208ENST00000556412 BARGINQ6ZT62 677 aa18.74■□□□□ 0.59
VIPAS39-208ENST00000556412 GLI3P10071 1580 aa18.73■□□□□ 0.59
VIPAS39-208ENST00000556412 TATP17735 454 aaPredicted RBP18.72■□□□□ 0.59
VIPAS39-208ENST00000556412 SEPT12Q8IYM1 358 aa18.72■□□□□ 0.59
VIPAS39-208ENST00000556412 FAM208AQ9UK61 1670 aaKnown RBP18.7■□□□□ 0.58
VIPAS39-208ENST00000556412 CDCA7Q9BWT1 371 aaPredicted RBP18.7■□□□□ 0.58
VIPAS39-208ENST00000556412 MEGF6O75095 1541 aa18.7■□□□□ 0.58
VIPAS39-208ENST00000556412 CCER2I3L3R5 266 aa18.7■□□□□ 0.58
VIPAS39-208ENST00000556412 NCAPD2Q15021 1401 aa18.69■□□□□ 0.58
VIPAS39-208ENST00000556412 PRKAR2BP31323 418 aa18.69■□□□□ 0.58
VIPAS39-208ENST00000556412 DDB1Q16531 1140 aa18.69■□□□□ 0.58
VIPAS39-208ENST00000556412 KDRP35968 1356 aa18.68■□□□□ 0.58
VIPAS39-208ENST00000556412 ADAMTS8Q9UP79 889 aa18.68■□□□□ 0.58
VIPAS39-208ENST00000556412 DISP2A7MBM2 1401 aa18.68■□□□□ 0.58
VIPAS39-208ENST00000556412 EXOC5O00471 708 aa18.67■□□□□ 0.58
VIPAS39-208ENST00000556412 ONECUT3O60422 494 aaPredicted RBP18.67■□□□□ 0.58
VIPAS39-208ENST00000556412 FAM9BQ8IZU0 186 aa18.67■□□□□ 0.58
VIPAS39-208ENST00000556412 RSPH6AQ9H0K4 717 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms