RNA–Protein interactions for RNA: ENST00000556315.5

ATXN3-239, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 924 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-239ENST00000556315 TOR4AQ9NXH8 423 aa8.01□□□□□ -1.13
ATXN3-239ENST00000556315 ZNF518AQ6AHZ1 1483 aa8□□□□□ -1.13
ATXN3-239ENST00000556315 POTECB2RU33 542 aa8□□□□□ -1.13
ATXN3-239ENST00000556315 KDM4AO75164 1064 aa8□□□□□ -1.13
ATXN3-239ENST00000556315 AAASQ9NRG9 546 aa8□□□□□ -1.13
ATXN3-239ENST00000556315 NCOA1Q15788 1441 aa8□□□□□ -1.13
ATXN3-239ENST00000556315 ZNF335Q9H4Z2 1342 aaPredicted RBP8□□□□□ -1.13
ATXN3-239ENST00000556315 PREX1Q8TCU6 1659 aa7.99□□□□□ -1.13
ATXN3-239ENST00000556315 AVPP01185 164 aa7.99□□□□□ -1.13
ATXN3-239ENST00000556315 USP46P62068 366 aa7.99□□□□□ -1.13
ATXN3-239ENST00000556315 MDM2Q00987 491 aaPredicted RBP7.99□□□□□ -1.13
ATXN3-239ENST00000556315 CRIPAKQ8N1N5 446 aa7.99□□□□□ -1.13
ATXN3-239ENST00000556315 SIGLEC1Q9BZZ2 1709 aa7.99□□□□□ -1.13
ATXN3-239ENST00000556315 CNTLNQ9NXG0 1405 aa7.99□□□□□ -1.13
ATXN3-239ENST00000556315 FER1L4A9Z1Z3 1794 aa7.99□□□□□ -1.13
ATXN3-239ENST00000556315 STRCQ7RTU9 1775 aa7.99□□□□□ -1.13
ATXN3-239ENST00000556315 SETD1BQ9UPS6 1966 aaKnown RBP7.99□□□□□ -1.13
ATXN3-239ENST00000556315 ZMYM3Q14202 1370 aa7.98□□□□□ -1.13
ATXN3-239ENST00000556315 CCDC102AQ96A19 550 aa7.98□□□□□ -1.13
ATXN3-239ENST00000556315 MLH3Q9UHC1 1453 aa7.98□□□□□ -1.13
ATXN3-239ENST00000556315 EEA1Q15075 1411 aa7.97□□□□□ -1.13
ATXN3-239ENST00000556315 ST8SIA5O15466 376 aa7.97□□□□□ -1.13
ATXN3-239ENST00000556315 ZBTB24O43167 697 aaPredicted RBP7.97□□□□□ -1.13
ATXN3-239ENST00000556315 TOM1O60784 492 aa7.97□□□□□ -1.13
ATXN3-239ENST00000556315 HSPA1LP34931 641 aa7.97□□□□□ -1.13
ATXN3-239ENST00000556315 ZC3H15Q8WU90 426 aaKnown RBP7.97□□□□□ -1.13
ATXN3-239ENST00000556315 USB1Q9BQ65 265 aaKnown RBP7.97□□□□□ -1.13
ATXN3-239ENST00000556315 NPATQ14207 1427 aa7.96□□□□□ -1.13
ATXN3-239ENST00000556315 HOXA2O43364 376 aa7.96□□□□□ -1.14
ATXN3-239ENST00000556315 DXOO77932 396 aaKnown RBP7.96□□□□□ -1.14
ATXN3-239ENST00000556315 UBTFP17480 764 aaKnown RBP7.96□□□□□ -1.14
ATXN3-239ENST00000556315 CYP4X1Q8N118 509 aa7.96□□□□□ -1.14
ATXN3-239ENST00000556315 AGLP35573 1532 aa7.96□□□□□ -1.14
ATXN3-239ENST00000556315 CDK13Q14004 1512 aaKnown RBP7.96□□□□□ -1.14
ATXN3-239ENST00000556315 TROQ12816 1431 aaPredicted RBP7.95□□□□□ -1.14
ATXN3-239ENST00000556315 FMN1Q68DA7 1419 aa7.95□□□□□ -1.14
ATXN3-239ENST00000556315 WNT7AO00755 349 aa7.95□□□□□ -1.14
ATXN3-239ENST00000556315 PIP4K2BP78356 416 aa7.95□□□□□ -1.14
ATXN3-239ENST00000556315 HLA-CQ95604 372 aa7.95□□□□□ -1.14
ATXN3-239ENST00000556315 GPCPD1Q9NPB8 672 aa7.95□□□□□ -1.14
ATXN3-239ENST00000556315 FAM217BQ9NTX9 383 aaPredicted RBP7.95□□□□□ -1.14
ATXN3-239ENST00000556315 CLIP1P30622 1438 aa7.95□□□□□ -1.14
ATXN3-239ENST00000556315 ARHGAP5Q13017 1502 aa7.94□□□□□ -1.14
ATXN3-239ENST00000556315 REREQ9P2R6 1566 aa7.94□□□□□ -1.14
ATXN3-239ENST00000556315 CLCN1P35523 988 aa7.94□□□□□ -1.14
ATXN3-239ENST00000556315 SMCPP49901 116 aaPredicted RBP7.94□□□□□ -1.14
ATXN3-239ENST00000556315 TRIM32Q13049 653 aa7.94□□□□□ -1.14
ATXN3-239ENST00000556315 KDM5CP41229 1560 aa7.93□□□□□ -1.14
ATXN3-239ENST00000556315 CTC1Q2NKJ3 1217 aa7.93□□□□□ -1.14
ATXN3-239ENST00000556315 SPAG9O60271 1321 aaKnown RBP7.93□□□□□ -1.14
ATXN3-239ENST00000556315 CAMSAP1Q5T5Y3 1602 aa7.92□□□□□ -1.14
ATXN3-239ENST00000556315 GGT6Q6P531 493 aa7.92□□□□□ -1.14
ATXN3-239ENST00000556315 DACH1Q9UI36 760 aa7.92□□□□□ -1.14
ATXN3-239ENST00000556315 ZNF777Q9ULD5 760 aaPredicted RBP7.92□□□□□ -1.14
ATXN3-239ENST00000556315 DIP2CQ9Y2E4 1556 aa7.92□□□□□ -1.14
ATXN3-239ENST00000556315 AXIN1O15169 862 aa7.91□□□□□ -1.14
ATXN3-239ENST00000556315 ZMYND10O75800 440 aa7.91□□□□□ -1.14
ATXN3-239ENST00000556315 HNRNPMP52272 730 aaKnown RBP eCLIP7.91□□□□□ -1.14
ATXN3-239ENST00000556315 SNIP1Q8TAD8 396 aaKnown RBP7.91□□□□□ -1.14
ATXN3-239ENST00000556315 PLA2R1Q13018 1463 aa7.91□□□□□ -1.14
ATXN3-239ENST00000556315 TTC24A2A3L6 582 aaPredicted RBP7.9□□□□□ -1.14
ATXN3-239ENST00000556315 SMPD1P17405 629 aa7.9□□□□□ -1.14
ATXN3-239ENST00000556315 GUCA2AQ02747 115 aa7.9□□□□□ -1.14
ATXN3-239ENST00000556315 REPIN1Q9BWE0 567 aaKnown RBP7.9□□□□□ -1.14
ATXN3-239ENST00000556315 C3P01024 1663 aa7.89□□□□□ -1.15
ATXN3-239ENST00000556315 TCOF1Q13428 1488 aaKnown RBP7.89□□□□□ -1.15
ATXN3-239ENST00000556315 PTPRKQ15262 1439 aa7.89□□□□□ -1.15
ATXN3-239ENST00000556315 BARGINQ6ZT62 677 aa7.89□□□□□ -1.15
ATXN3-239ENST00000556315 ANKLE2Q86XL3 938 aa7.89□□□□□ -1.15
ATXN3-239ENST00000556315 MRGPRX2Q96LB1 330 aa7.89□□□□□ -1.15
ATXN3-239ENST00000556315 JUNDP17535 347 aa7.88□□□□□ -1.15
ATXN3-239ENST00000556315 LCE2AQ5TA79 106 aaPredicted RBP7.88□□□□□ -1.15
ATXN3-239ENST00000556315 NUTM1Q86Y26 1132 aa7.88□□□□□ -1.15
ATXN3-239ENST00000556315 THEMISQ8N1K5 641 aaPredicted RBP7.88□□□□□ -1.15
ATXN3-239ENST00000556315 SYMPKQ92797 1274 aaKnown RBP7.88□□□□□ -1.15
ATXN3-239ENST00000556315 KIF14Q15058 1648 aa7.88□□□□□ -1.15
ATXN3-239ENST00000556315 ARHGAP35Q9NRY4 1499 aa7.87□□□□□ -1.15
ATXN3-239ENST00000556315 WNT7BP56706 349 aa7.87□□□□□ -1.15
ATXN3-239ENST00000556315 SKOR1P84550 965 aa7.87□□□□□ -1.15
ATXN3-239ENST00000556315 RETREG3Q86VR2 466 aa7.87□□□□□ -1.15
ATXN3-239ENST00000556315 GMPR2Q9P2T1 348 aaKnown RBP7.87□□□□□ -1.15
ATXN3-239ENST00000556315 CFDP1Q9UEE9 299 aaPredicted RBP7.87□□□□□ -1.15
ATXN3-239ENST00000556315 MYO5CQ9NQX4 1742 aa7.86□□□□□ -1.15
ATXN3-239ENST00000556315 ABCA6Q8N139 1617 aa7.86□□□□□ -1.15
ATXN3-239ENST00000556315 J3QL48 77 aa7.86□□□□□ -1.15
ATXN3-239ENST00000556315 CCDC24Q8N4L8 307 aa7.86□□□□□ -1.15
ATXN3-239ENST00000556315 KRI1Q8N9T8 703 aaKnown RBP7.86□□□□□ -1.15
ATXN3-239ENST00000556315 PCDHGC3Q9UN70 934 aa7.86□□□□□ -1.15
ATXN3-239ENST00000556315 SHANK2Q9UPX8 1470 aa7.86□□□□□ -1.15
ATXN3-239ENST00000556315 KIAA1107Q9UPP5 1409 aa7.86□□□□□ -1.15
ATXN3-239ENST00000556315 CPS1P31327 1500 aa7.85□□□□□ -1.15
ATXN3-239ENST00000556315 ABCC1P33527 1531 aa7.85□□□□□ -1.15
ATXN3-239ENST00000556315 SSTR3P32745 418 aaPredicted RBP7.85□□□□□ -1.15
ATXN3-239ENST00000556315 RC3H1Q5TC82 1133 aaKnown RBP7.85□□□□□ -1.15
ATXN3-239ENST00000556315 FBXO31Q5XUX0 539 aaPredicted RBP7.85□□□□□ -1.15
ATXN3-239ENST00000556315 TREML4Q6UXN2 200 aa7.85□□□□□ -1.15
ATXN3-239ENST00000556315 A2MP01023 1474 aa7.85□□□□□ -1.15
ATXN3-239ENST00000556315 MED1Q15648 1581 aaPredicted RBP7.84□□□□□ -1.15
ATXN3-239ENST00000556315 A2ML1A8K2U0 1454 aa7.84□□□□□ -1.15
ATXN3-239ENST00000556315 FDX1P10109 184 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms