RNA–Protein interactions for RNA: ENST00000556315.5

ATXN3-239, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 924 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-239ENST00000556315 AEBP2Q6ZN18 517 aaPredicted RBP21.83■■□□□ 1.09
ATXN3-239ENST00000556315 CHIC1Q5VXU3 224 aa20.78■□□□□ 0.92
ATXN3-239ENST00000556315 SENP3Q9H4L4 574 aaPredicted RBP18.59■□□□□ 0.57
ATXN3-239ENST00000556315 PHF23Q9BUL5 403 aaPredicted RBP18.36■□□□□ 0.53
ATXN3-239ENST00000556315 FOXD1Q16676 465 aa17.33■□□□□ 0.36
ATXN3-239ENST00000556315 PLPPR3Q6T4P5 718 aa16.6■□□□□ 0.25
ATXN3-239ENST00000556315 PPP6R1Q9UPN7 881 aa16.25■□□□□ 0.19
ATXN3-239ENST00000556315 MSH5O43196 834 aa16.2■□□□□ 0.18
ATXN3-239ENST00000556315 ADRA2BP18089 450 aa16.17■□□□□ 0.18
ATXN3-239ENST00000556315 PIAS4Q8N2W9 510 aaPredicted RBP16.17■□□□□ 0.18
ATXN3-239ENST00000556315 POTEDQ86YR6 584 aa15.73■□□□□ 0.11
ATXN3-239ENST00000556315 MAPK8IP2Q13387 824 aaPredicted RBP14.84□□□□□ -0.03
ATXN3-239ENST00000556315 SCAF1Q9H7N4 1312 aaKnown RBP14.8□□□□□ -0.04
ATXN3-239ENST00000556315 DMRT2Q9Y5R5 561 aa14.77□□□□□ -0.05
ATXN3-239ENST00000556315 PPP4R3CPQ6ZMV5 832 aa14.56□□□□□ -0.08
ATXN3-239ENST00000556315 CNKSR2Q8WXI2 1034 aa14.28□□□□□ -0.12
ATXN3-239ENST00000556315 HOXD11P31277 338 aaPredicted RBP14.26□□□□□ -0.13
ATXN3-239ENST00000556315 RNF216Q9NWF9 866 aaPredicted RBP14.15□□□□□ -0.14
ATXN3-239ENST00000556315 DCAF8L1A6NGE4 600 aa14.07□□□□□ -0.16
ATXN3-239ENST00000556315 NCBP3Q53F19 620 aaKnown RBP14□□□□□ -0.17
ATXN3-239ENST00000556315 RNF39Q9H2S5 420 aa13.84□□□□□ -0.19
ATXN3-239ENST00000556315 CACNB1Q02641 598 aaPredicted RBP13.83□□□□□ -0.2
ATXN3-239ENST00000556315 NPM3O75607 178 aaKnown RBP13.81□□□□□ -0.2
ATXN3-239ENST00000556315 DNAJC5BQ9UF47 199 aa13.8□□□□□ -0.2
ATXN3-239ENST00000556315 C1QBPQ07021 282 aaKnown RBP13.64□□□□□ -0.23
ATXN3-239ENST00000556315 KCNA4P22459 653 aa13.58□□□□□ -0.24
ATXN3-239ENST00000556315 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.52□□□□□ -0.25
ATXN3-239ENST00000556315 U3KPZ7 1027 aaPredicted RBP13.28□□□□□ -0.28
ATXN3-239ENST00000556315 SLC4A2P04920 1241 aa13.2□□□□□ -0.3
ATXN3-239ENST00000556315 SPINK5Q9NQ38 1064 aaPredicted RBP13.06□□□□□ -0.32
ATXN3-239ENST00000556315 CAPN15O75808 1086 aa13□□□□□ -0.33
ATXN3-239ENST00000556315 DSG3P32926 999 aa12.97□□□□□ -0.33
ATXN3-239ENST00000556315 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.9□□□□□ -0.34
ATXN3-239ENST00000556315 HNRNPUL2Q1KMD3 747 aaKnown RBP12.9□□□□□ -0.34
ATXN3-239ENST00000556315 APLP2Q06481 763 aa12.89□□□□□ -0.35
ATXN3-239ENST00000556315 SAMD1Q6SPF0 538 aaPredicted RBP12.84□□□□□ -0.35
ATXN3-239ENST00000556315 ZNF219Q9P2Y4 722 aaPredicted RBP12.82□□□□□ -0.36
ATXN3-239ENST00000556315 SLC4A1APQ9BWU0 796 aaKnown RBP12.81□□□□□ -0.36
ATXN3-239ENST00000556315 TRHP20396 242 aaPredicted RBP12.8□□□□□ -0.36
ATXN3-239ENST00000556315 MYCNP04198 464 aaPredicted RBP12.77□□□□□ -0.37
ATXN3-239ENST00000556315 ABCB7O75027 752 aa12.7□□□□□ -0.38
ATXN3-239ENST00000556315 FOXD4L1Q9NU39 408 aa12.66□□□□□ -0.38
ATXN3-239ENST00000556315 ZBTB22O15209 634 aa12.5□□□□□ -0.41
ATXN3-239ENST00000556315 POLA2Q14181 598 aa12.5□□□□□ -0.41
ATXN3-239ENST00000556315 ATF5Q9Y2D1 282 aaPredicted RBP12.48□□□□□ -0.41
ATXN3-239ENST00000556315 RBM42Q9BTD8 480 aaKnown RBP12.36□□□□□ -0.43
ATXN3-239ENST00000556315 POTEHQ6S545 545 aa12.32□□□□□ -0.44
ATXN3-239ENST00000556315 ATXN8OSP0DMR3 200 aa12.3□□□□□ -0.44
ATXN3-239ENST00000556315 ZBTB12Q9Y330 459 aaPredicted RBP12.25□□□□□ -0.45
ATXN3-239ENST00000556315 NISCHQ9Y2I1 1504 aa12.16□□□□□ -0.46
ATXN3-239ENST00000556315 AKT1S1Q96B36 256 aa12.1□□□□□ -0.47
ATXN3-239ENST00000556315 OSCARQ8IYS5 282 aa12.09□□□□□ -0.47
ATXN3-239ENST00000556315 CHRDL2Q6WN34 429 aa12.06□□□□□ -0.48
ATXN3-239ENST00000556315 REM2Q8IYK8 340 aaPredicted RBP11.97□□□□□ -0.49
ATXN3-239ENST00000556315 CSRNP3Q8WYN3 585 aa11.97□□□□□ -0.49
ATXN3-239ENST00000556315 FBLN2P98095 1184 aa11.96□□□□□ -0.49
ATXN3-239ENST00000556315 MKRN4PQ13434 485 aaPredicted RBP11.91□□□□□ -0.5
ATXN3-239ENST00000556315 SPDYE2BA6NHP3 402 aa11.9□□□□□ -0.5
ATXN3-239ENST00000556315 SPDYE6P0CI01 402 aa11.9□□□□□ -0.5
ATXN3-239ENST00000556315 SPDYE2Q495Y8 402 aa11.9□□□□□ -0.5
ATXN3-239ENST00000556315 PITPNM1O00562 1244 aa11.84□□□□□ -0.51
ATXN3-239ENST00000556315 PIP4P2Q8N4L2 257 aa11.79□□□□□ -0.52
ATXN3-239ENST00000556315 FXR2P51116 673 aaKnown RBP eCLIP11.76□□□□□ -0.53
ATXN3-239ENST00000556315 EHMT2Q96KQ7 1210 aa11.76□□□□□ -0.53
ATXN3-239ENST00000556315 SSUH2Q9Y2M2 353 aa11.76□□□□□ -0.53
ATXN3-239ENST00000556315 ZNF692Q9BU19 519 aaPredicted RBP11.73□□□□□ -0.53
ATXN3-239ENST00000556315 SPDYE1Q8NFV5 336 aaPredicted RBP11.66□□□□□ -0.54
ATXN3-239ENST00000556315 CLEC11AQ9Y240 323 aa11.59□□□□□ -0.55
ATXN3-239ENST00000556315 SP7Q8TDD2 431 aaPredicted RBP11.58□□□□□ -0.56
ATXN3-239ENST00000556315 PABPN1Q86U42 306 aaKnown RBP eCLIP11.56□□□□□ -0.56
ATXN3-239ENST00000556315 HAX1O00165 279 aa11.53□□□□□ -0.56
ATXN3-239ENST00000556315 PRKAR2AP13861 404 aaKnown RBP11.52□□□□□ -0.57
ATXN3-239ENST00000556315 PRR29P0C7W0 189 aa11.44□□□□□ -0.58
ATXN3-239ENST00000556315 EVX2Q03828 476 aa11.44□□□□□ -0.58
ATXN3-239ENST00000556315 CHADLQ6NUI6 762 aa11.39□□□□□ -0.59
ATXN3-239ENST00000556315 C19orf67A6NJJ6 358 aa11.38□□□□□ -0.59
ATXN3-239ENST00000556315 SPDYE4A6NLX3 237 aa11.35□□□□□ -0.59
ATXN3-239ENST00000556315 ABCC9O60706 1549 aa11.29□□□□□ -0.6
ATXN3-239ENST00000556315 STAG3Q9UJ98 1225 aa11.27□□□□□ -0.61
ATXN3-239ENST00000556315 FARP1Q9Y4F1 1045 aaPredicted RBP11.25□□□□□ -0.61
ATXN3-239ENST00000556315 CREBZFQ9NS37 354 aa11.19□□□□□ -0.62
ATXN3-239ENST00000556315 GABBR2O75899 941 aa11.18□□□□□ -0.62
ATXN3-239ENST00000556315 CD44P16070 742 aaKnown RBP11.15□□□□□ -0.62
ATXN3-239ENST00000556315 PROM2Q8N271 834 aa11.15□□□□□ -0.62
ATXN3-239ENST00000556315 CLCN6P51797 869 aa11.05□□□□□ -0.64
ATXN3-239ENST00000556315 MNX1P50219 401 aaPredicted RBP11.03□□□□□ -0.64
ATXN3-239ENST00000556315 ZNF579Q8NAF0 562 aaKnown RBP11.02□□□□□ -0.65
ATXN3-239ENST00000556315 ZRANB1Q9UGI0 708 aa11□□□□□ -0.65
ATXN3-239ENST00000556315 NPM1P06748 294 aaKnown RBP eCLIP10.97□□□□□ -0.65
ATXN3-239ENST00000556315 POTEIP0CG38 1075 aa10.96□□□□□ -0.65
ATXN3-239ENST00000556315 PAK3O75914 559 aaPredicted RBP10.91□□□□□ -0.66
ATXN3-239ENST00000556315 CCDC180Q9P1Z9 1646 aa10.9□□□□□ -0.66
ATXN3-239ENST00000556315 GALR2O43603 387 aaPredicted RBP10.86□□□□□ -0.67
ATXN3-239ENST00000556315 LHX8Q68G74 356 aa10.86□□□□□ -0.67
ATXN3-239ENST00000556315 DCBLD2Q96PD2 775 aa10.85□□□□□ -0.67
ATXN3-239ENST00000556315 PHF12Q96QT6 1004 aa10.85□□□□□ -0.67
ATXN3-239ENST00000556315 FKBP8Q14318 412 aa10.81□□□□□ -0.68
ATXN3-239ENST00000556315 MIER1Q8N108 512 aa10.8□□□□□ -0.68
ATXN3-239ENST00000556315 PLEKHG5O94827 1062 aa10.78□□□□□ -0.68
ATXN3-239ENST00000556315 TSPYL2Q9H2G4 693 aaPredicted RBP10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 119.9 ms