RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 SH3D19Q5HYK7 790 aa3.39□□□□□ -1.87
PRPF39-208ENST00000554785 IL27Q8NEV9 243 aa3.39□□□□□ -1.87
PRPF39-208ENST00000554785 EPS8L1Q8TE68 723 aa3.39□□□□□ -1.87
PRPF39-208ENST00000554785 DDRGK1Q96HY6 314 aa3.39□□□□□ -1.87
PRPF39-208ENST00000554785 BMP1P13497 986 aa3.38□□□□□ -1.87
PRPF39-208ENST00000554785 BRPF1P55201 1214 aaPredicted RBP3.38□□□□□ -1.87
PRPF39-208ENST00000554785 K7ELQ4 463 aaPredicted RBP3.38□□□□□ -1.87
PRPF39-208ENST00000554785 MSTNO14793 375 aa3.38□□□□□ -1.87
PRPF39-208ENST00000554785 VARSP26640 1264 aaKnown RBP3.38□□□□□ -1.87
PRPF39-208ENST00000554785 PPP2R2DQ66LE6 453 aa3.38□□□□□ -1.87
PRPF39-208ENST00000554785 SH3RF1Q7Z6J0 888 aa3.38□□□□□ -1.87
PRPF39-208ENST00000554785 HELBQ8NG08 1087 aaPredicted RBP3.38□□□□□ -1.87
PRPF39-208ENST00000554785 KLF16Q9BXK1 252 aaPredicted RBP3.38□□□□□ -1.87
PRPF39-208ENST00000554785 HMX1Q9NP08 348 aaPredicted RBP3.38□□□□□ -1.87
PRPF39-208ENST00000554785 NR3C2P08235 984 aa3.37□□□□□ -1.87
PRPF39-208ENST00000554785 GRM5P41594 1212 aa3.37□□□□□ -1.87
PRPF39-208ENST00000554785 ARID5BQ14865 1188 aa3.37□□□□□ -1.87
PRPF39-208ENST00000554785 NR6A1Q15406 480 aa3.37□□□□□ -1.87
PRPF39-208ENST00000554785 NEUROD2Q15784 382 aa3.37□□□□□ -1.87
PRPF39-208ENST00000554785 TRIM46Q7Z4K8 759 aa3.37□□□□□ -1.87
PRPF39-208ENST00000554785 AP1G2O75843 785 aa3.37□□□□□ -1.87
PRPF39-208ENST00000554785 NNTQ13423 1086 aa3.37□□□□□ -1.87
PRPF39-208ENST00000554785 SH3BP5LQ7L8J4 393 aa3.37□□□□□ -1.87
PRPF39-208ENST00000554785 CDK15Q96Q40 435 aa3.37□□□□□ -1.87
PRPF39-208ENST00000554785 OCSTAMPQ9BR26 566 aa3.37□□□□□ -1.87
PRPF39-208ENST00000554785 ATP1B4Q9UN42 357 aaPredicted RBP3.37□□□□□ -1.87
PRPF39-208ENST00000554785 MAGEB6P1A0A0J9YX57 407 aa3.36□□□□□ -1.87
PRPF39-208ENST00000554785 AGERQ15109 404 aa3.36□□□□□ -1.87
PRPF39-208ENST00000554785 ADH1CP00326 375 aa3.35□□□□□ -1.87
PRPF39-208ENST00000554785 TIMP2P16035 220 aa3.35□□□□□ -1.87
PRPF39-208ENST00000554785 RFC5P40937 340 aa3.35□□□□□ -1.87
PRPF39-208ENST00000554785 BPHLQ86WA6 291 aaPredicted RBP3.35□□□□□ -1.87
PRPF39-208ENST00000554785 CARD14Q9BXL6 1004 aa3.35□□□□□ -1.87
PRPF39-208ENST00000554785 ZFAND3Q9H8U3 227 aa3.35□□□□□ -1.87
PRPF39-208ENST00000554785 MRPL14Q6P1L8 145 aaKnown RBP3.35□□□□□ -1.87
PRPF39-208ENST00000554785 FAM174AQ8TBP5 190 aa3.35□□□□□ -1.87
PRPF39-208ENST00000554785 ITPKCQ96DU7 683 aa3.35□□□□□ -1.87
PRPF39-208ENST00000554785 C1QTNF2Q9BXJ5 285 aa3.35□□□□□ -1.87
PRPF39-208ENST00000554785 UPP2O95045 317 aa3.34□□□□□ -1.87
PRPF39-208ENST00000554785 USP17L8P0C7I0 530 aa3.34□□□□□ -1.87
PRPF39-208ENST00000554785 WDR4P57081 412 aaKnown RBP3.34□□□□□ -1.87
PRPF39-208ENST00000554785 ERFEQ4G0M1 354 aa3.34□□□□□ -1.87
PRPF39-208ENST00000554785 ZFP42Q96MM3 310 aa3.34□□□□□ -1.87
PRPF39-208ENST00000554785 TRIM34Q9BYJ4 488 aa3.34□□□□□ -1.87
PRPF39-208ENST00000554785 FKBPLQ9UIM3 349 aa3.34□□□□□ -1.87
PRPF39-208ENST00000554785 KANK3Q6NY19 840 aa3.34□□□□□ -1.88
PRPF39-208ENST00000554785 GOPCQ9HD26 462 aa3.34□□□□□ -1.88
PRPF39-208ENST00000554785 SOBPA7XYQ1 873 aa3.33□□□□□ -1.88
PRPF39-208ENST00000554785 ZIC2O95409 532 aaPredicted RBP3.33□□□□□ -1.88
PRPF39-208ENST00000554785 FSHRP23945 695 aa3.33□□□□□ -1.88
PRPF39-208ENST00000554785 NBPF14Q5TI25 921 aa3.33□□□□□ -1.88
PRPF39-208ENST00000554785 ARMC2Q8NEN0 867 aa3.33□□□□□ -1.88
PRPF39-208ENST00000554785 ERBB4Q15303 1308 aa3.33□□□□□ -1.88
PRPF39-208ENST00000554785 NR5A1Q13285 461 aa3.32□□□□□ -1.88
PRPF39-208ENST00000554785 PDXDC2PQ6P474 469 aa3.32□□□□□ -1.88
PRPF39-208ENST00000554785 TRMT44Q8IYL2 757 aaKnown RBP3.32□□□□□ -1.88
PRPF39-208ENST00000554785 GJD4Q96KN9 370 aaPredicted RBP3.32□□□□□ -1.88
PRPF39-208ENST00000554785 PURBQ96QR8 312 aaKnown RBP3.32□□□□□ -1.88
PRPF39-208ENST00000554785 VASH1Q7L8A9 365 aaPredicted RBP3.32□□□□□ -1.88
PRPF39-208ENST00000554785 ADAM32Q8TC27 787 aa3.32□□□□□ -1.88
PRPF39-208ENST00000554785 PCMTD1Q96MG8 357 aaPredicted RBP3.32□□□□□ -1.88
PRPF39-208ENST00000554785 ARHGAP9Q9BRR9 750 aa3.32□□□□□ -1.88
PRPF39-208ENST00000554785 ADAMTS8Q9UP79 889 aa3.32□□□□□ -1.88
PRPF39-208ENST00000554785 MAN1A2O60476 641 aa3.31□□□□□ -1.88
PRPF39-208ENST00000554785 GPR37L1O60883 481 aa3.31□□□□□ -1.88
PRPF39-208ENST00000554785 VEGFBP49765 207 aa3.31□□□□□ -1.88
PRPF39-208ENST00000554785 GPKOWQ92917 476 aaPredicted RBP eCLIP3.31□□□□□ -1.889e-6■■□□□ 14.5
PRPF39-208ENST00000554785 MAP4K5Q9Y4K4 846 aa3.31□□□□□ -1.88
PRPF39-208ENST00000554785 YBX3P16989 372 aaKnown RBP eCLIP3.31□□□□□ -1.88
PRPF39-208ENST00000554785 IRS1P35568 1242 aa3.31□□□□□ -1.88
PRPF39-208ENST00000554785 CBLBQ13191 982 aa3.31□□□□□ -1.88
PRPF39-208ENST00000554785 C6orf118Q5T5N4 469 aa3.31□□□□□ -1.88
PRPF39-208ENST00000554785 PPP1R26Q5T8A7 1209 aaPredicted RBP3.31□□□□□ -1.88
PRPF39-208ENST00000554785 KCTD15Q96SI1 283 aaPredicted RBP3.31□□□□□ -1.88
PRPF39-208ENST00000554785 PPFIA3O75145 1194 aa3.3□□□□□ -1.88
PRPF39-208ENST00000554785 ZBTB33Q86T24 672 aa3.3□□□□□ -1.88
PRPF39-208ENST00000554785 CCDC116Q8IYX3 515 aa3.3□□□□□ -1.88
PRPF39-208ENST00000554785 TRIM52Q96A61 297 aa3.3□□□□□ -1.88
PRPF39-208ENST00000554785 SNRKQ9NRH2 765 aa3.3□□□□□ -1.88
PRPF39-208ENST00000554785 SLURP2P0DP57 97 aa3.29□□□□□ -1.88
PRPF39-208ENST00000554785 ZNF800Q2TB10 664 aaPredicted RBP eCLIP3.29□□□□□ -1.88
PRPF39-208ENST00000554785 TMEM259Q4ZIN3 620 aa3.29□□□□□ -1.88
PRPF39-208ENST00000554785 INTS6LQ5JSJ4 861 aaKnown RBP3.29□□□□□ -1.88
PRPF39-208ENST00000554785 MEIOBQ8N635 442 aa3.29□□□□□ -1.88
PRPF39-208ENST00000554785 MTMR14Q8NCE2 650 aa3.29□□□□□ -1.88
PRPF39-208ENST00000554785 NANOS1Q8WY41 292 aaKnown RBP3.29□□□□□ -1.88
PRPF39-208ENST00000554785 SCARF2Q96GP6 870 aaPredicted RBP3.29□□□□□ -1.88
PRPF39-208ENST00000554785 SPOCK3Q9BQ16 436 aa3.29□□□□□ -1.88
PRPF39-208ENST00000554785 TMPRSS4Q9NRS4 437 aa3.29□□□□□ -1.88
PRPF39-208ENST00000554785 FBXO45P0C2W1 286 aa3.29□□□□□ -1.88
PRPF39-208ENST00000554785 RAB15P59190 212 aa3.29□□□□□ -1.88
PRPF39-208ENST00000554785 PTK2Q05397 1052 aa3.29□□□□□ -1.88
PRPF39-208ENST00000554785 LINC00528Q8N1L1 170 aa3.29□□□□□ -1.88
PRPF39-208ENST00000554785 SLC10A4Q96EP9 437 aa3.29□□□□□ -1.88
PRPF39-208ENST00000554785 TSEN34Q9BSV6 310 aaKnown RBP3.29□□□□□ -1.88
PRPF39-208ENST00000554785 ZC3H4Q9UPT8 1303 aaKnown RBP3.29□□□□□ -1.88
PRPF39-208ENST00000554785 AGBL1Q96MI9 1066 aa3.28□□□□□ -1.88
PRPF39-208ENST00000554785 DNMT3LQ9UJW3 386 aa3.28□□□□□ -1.88
PRPF39-208ENST00000554785 GPSM3Q9Y4H4 160 aa3.28□□□□□ -1.88
PRPF39-208ENST00000554785 EMILIN1Q9Y6C2 1016 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 99 ms