RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 COL18A1P39060 1754 aa16.36■□□□□ 0.21
VPS33B-204ENST00000554660 NLRP6P59044 892 aa16.36■□□□□ 0.21
VPS33B-204ENST00000554660 DDB1Q16531 1140 aa16.35■□□□□ 0.21
VPS33B-204ENST00000554660 TOM1L2Q6ZVM7 507 aa16.35■□□□□ 0.21
VPS33B-204ENST00000554660 CABP1Q9NZU7 370 aa16.35■□□□□ 0.21
VPS33B-204ENST00000554660 AKAP12Q02952 1782 aa16.35■□□□□ 0.21
VPS33B-204ENST00000554660 BRD4O60885 1362 aaPredicted RBP16.35■□□□□ 0.21
VPS33B-204ENST00000554660 CPSF1Q10570 1443 aaKnown RBP16.35■□□□□ 0.21
VPS33B-204ENST00000554660 MYOM1P52179 1685 aa16.34■□□□□ 0.21
VPS33B-204ENST00000554660 PDGFDQ9GZP0 370 aaPredicted RBP16.34■□□□□ 0.21
VPS33B-204ENST00000554660 C11orf95C9JLR9 678 aaPredicted RBP16.33■□□□□ 0.2
VPS33B-204ENST00000554660 PLSCR1O15162 318 aa16.32■□□□□ 0.2
VPS33B-204ENST00000554660 WDR17Q8IZU2 1322 aa16.32■□□□□ 0.2
VPS33B-204ENST00000554660 AXIN2Q9Y2T1 843 aa16.32■□□□□ 0.2
VPS33B-204ENST00000554660 SOX12O15370 315 aa16.31■□□□□ 0.2
VPS33B-204ENST00000554660 MARCH10Q8NA82 808 aaPredicted RBP16.31■□□□□ 0.2
VPS33B-204ENST00000554660 BCL11BQ9C0K0 894 aaPredicted RBP16.31■□□□□ 0.2
VPS33B-204ENST00000554660 RGPD5Q99666 1765 aa16.31■□□□□ 0.2
VPS33B-204ENST00000554660 TRPM1Q7Z4N2 1603 aa16.3■□□□□ 0.2
VPS33B-204ENST00000554660 ZBTB7AO95365 584 aa16.3■□□□□ 0.2
VPS33B-204ENST00000554660 DCAF8L1A6NGE4 600 aa16.29■□□□□ 0.2
VPS33B-204ENST00000554660 PROM2Q8N271 834 aa16.29■□□□□ 0.2
VPS33B-204ENST00000554660 NFAT5O94916 1531 aa16.29■□□□□ 0.2
VPS33B-204ENST00000554660 BCL9O00512 1426 aa16.28■□□□□ 0.2
VPS33B-204ENST00000554660 CSB-PGBD3P0DP91 1061 aa16.27■□□□□ 0.2
VPS33B-204ENST00000554660 TNS2Q63HR2 1409 aa16.27■□□□□ 0.19
VPS33B-204ENST00000554660 EVC2Q86UK5 1308 aa16.26■□□□□ 0.19
VPS33B-204ENST00000554660 UTRNP46939 3433 aa16.26■□□□□ 0.19
VPS33B-204ENST00000554660 ARHGEF25Q86VW2 580 aa16.26■□□□□ 0.19
VPS33B-204ENST00000554660 TTC21BQ7Z4L5 1316 aa16.25■□□□□ 0.19
VPS33B-204ENST00000554660 NHSQ6T4R5 1651 aa16.25■□□□□ 0.19
VPS33B-204ENST00000554660 PTGER2P43116 358 aa16.25■□□□□ 0.19
VPS33B-204ENST00000554660 TXNRD1Q16881 649 aa16.25■□□□□ 0.19
VPS33B-204ENST00000554660 CDCA7Q9BWT1 371 aaPredicted RBP16.25■□□□□ 0.19
VPS33B-204ENST00000554660 CARD10Q9BWT7 1032 aa16.25■□□□□ 0.19
VPS33B-204ENST00000554660 ATF5Q9Y2D1 282 aaPredicted RBP16.25■□□□□ 0.19
VPS33B-204ENST00000554660 DIEXFQ68CQ4 756 aaKnown RBP16.24■□□□□ 0.19
VPS33B-204ENST00000554660 KCNH5Q8NCM2 988 aa16.24■□□□□ 0.19
VPS33B-204ENST00000554660 STK32BQ9NY57 414 aa16.24■□□□□ 0.19
VPS33B-204ENST00000554660 ZNF316A6NFI3 1004 aaPredicted RBP16.23■□□□□ 0.19
VPS33B-204ENST00000554660 ABCC6O95255 1503 aa16.23■□□□□ 0.19
VPS33B-204ENST00000554660 MON2Q7Z3U7 1717 aa16.22■□□□□ 0.19
VPS33B-204ENST00000554660 SLC15A2Q16348 729 aa16.22■□□□□ 0.19
VPS33B-204ENST00000554660 PAPPAQ13219 1627 aa16.22■□□□□ 0.19
VPS33B-204ENST00000554660 CCDC7Q96M83 1385 aa16.22■□□□□ 0.19
VPS33B-204ENST00000554660 TTC21AQ8NDW8 1320 aa16.21■□□□□ 0.19
VPS33B-204ENST00000554660 EXOC5O00471 708 aa16.21■□□□□ 0.19
VPS33B-204ENST00000554660 L3MBTL2Q969R5 705 aa16.21■□□□□ 0.19
VPS33B-204ENST00000554660 FHDC1Q9C0D6 1143 aaPredicted RBP16.21■□□□□ 0.19
VPS33B-204ENST00000554660 KTN1Q86UP2 1357 aaKnown RBP16.21■□□□□ 0.19
VPS33B-204ENST00000554660 ACSBG1Q96GR2 724 aa16.2■□□□□ 0.18
VPS33B-204ENST00000554660 ROCK2O75116 1388 aaKnown RBP16.2■□□□□ 0.18
VPS33B-204ENST00000554660 PELP1Q8IZL8 1130 aaKnown RBP16.19■□□□□ 0.18
VPS33B-204ENST00000554660 ZNF784Q8NCA9 323 aaPredicted RBP16.19■□□□□ 0.18
VPS33B-204ENST00000554660 ZNF692Q9BU19 519 aaPredicted RBP16.19■□□□□ 0.18
VPS33B-204ENST00000554660 USP54Q70EL1 1684 aa16.18■□□□□ 0.18
VPS33B-204ENST00000554660 BTAF1O14981 1849 aa16.18■□□□□ 0.18
VPS33B-204ENST00000554660 SYT17Q9BSW7 474 aa16.18■□□□□ 0.18
VPS33B-204ENST00000554660 MTFR1LQ9H019 292 aa16.18■□□□□ 0.18
VPS33B-204ENST00000554660 LTN1O94822 1766 aa16.18■□□□□ 0.18
VPS33B-204ENST00000554660 ERBB3P21860 1342 aa16.18■□□□□ 0.18
VPS33B-204ENST00000554660 SGIP1Q9BQI5 828 aa16.17■□□□□ 0.18
VPS33B-204ENST00000554660 CENPBP07199 599 aaPredicted RBP16.16■□□□□ 0.18
VPS33B-204ENST00000554660 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.16■□□□□ 0.18
VPS33B-204ENST00000554660 CD163L1Q9NR16 1453 aa16.16■□□□□ 0.18
VPS33B-204ENST00000554660 NLRP2Q9NX02 1062 aa16.15■□□□□ 0.18
VPS33B-204ENST00000554660 ZNF827Q17R98 1081 aa16.14■□□□□ 0.17
VPS33B-204ENST00000554660 NME9Q86XW9 330 aa16.14■□□□□ 0.17
VPS33B-204ENST00000554660 SIN3AQ96ST3 1273 aa16.14■□□□□ 0.17
VPS33B-204ENST00000554660 USP31Q70CQ4 1352 aa16.13■□□□□ 0.17
VPS33B-204ENST00000554660 IL2RBP14784 551 aa16.13■□□□□ 0.17
VPS33B-204ENST00000554660 ARXQ96QS3 562 aa16.13■□□□□ 0.17
VPS33B-204ENST00000554660 SBNO2Q9Y2G9 1366 aa16.13■□□□□ 0.17
VPS33B-204ENST00000554660 ANKRD24Q8TF21 1146 aa16.12■□□□□ 0.17
VPS33B-204ENST00000554660 LRRC4BQ9NT99 713 aa16.11■□□□□ 0.17
VPS33B-204ENST00000554660 CHD4Q14839 1912 aa16.1■□□□□ 0.17
VPS33B-204ENST00000554660 NEUROD1Q13562 356 aa16.1■□□□□ 0.17
VPS33B-204ENST00000554660 MAP3K5Q99683 1374 aa16.1■□□□□ 0.17
VPS33B-204ENST00000554660 TUBGCP6Q96RT7 1819 aa16.08■□□□□ 0.17
VPS33B-204ENST00000554660 SENP3-EIF4A1A0A087X0R7 540 aa16.08■□□□□ 0.16
VPS33B-204ENST00000554660 KLHL34Q8N239 644 aa16.08■□□□□ 0.16
VPS33B-204ENST00000554660 TMC1Q8TDI8 760 aa16.08■□□□□ 0.16
VPS33B-204ENST00000554660 GOLGB1Q14789 3259 aaKnown RBP16.08■□□□□ 0.16
VPS33B-204ENST00000554660 EDC4Q6P2E9 1401 aaKnown RBP16.08■□□□□ 0.16
VPS33B-204ENST00000554660 QSER1Q2KHR3 1735 aa16.08■□□□□ 0.16
VPS33B-204ENST00000554660 DOT1LQ8TEK3 1739 aa16.08■□□□□ 0.16
VPS33B-204ENST00000554660 A0A1W2PP64 1363 aa16.07■□□□□ 0.16
VPS33B-204ENST00000554660 FAM208AQ9UK61 1670 aaKnown RBP16.07■□□□□ 0.16
VPS33B-204ENST00000554660 AKT1S1Q96B36 256 aa16.06■□□□□ 0.16
VPS33B-204ENST00000554660 PNPLA7Q6ZV29 1317 aa16.05■□□□□ 0.16
VPS33B-204ENST00000554660 KCNQ4P56696 695 aa16.05■□□□□ 0.16
VPS33B-204ENST00000554660 GPR162Q16538 588 aa16.05■□□□□ 0.16
VPS33B-204ENST00000554660 HDGFL2Q7Z4V5 671 aaPredicted RBP16.05■□□□□ 0.16
VPS33B-204ENST00000554660 DDX54Q8TDD1 881 aaKnown RBP16.05■□□□□ 0.16
VPS33B-204ENST00000554660 SLC12A5Q9H2X9 1139 aa16.05■□□□□ 0.16
VPS33B-204ENST00000554660 COL24A1Q17RW2 1714 aa16.05■□□□□ 0.16
VPS33B-204ENST00000554660 C1QTNF8P60827 252 aa16.04■□□□□ 0.16
VPS33B-204ENST00000554660 LTV1Q96GA3 475 aaPredicted RBP16.04■□□□□ 0.16
VPS33B-204ENST00000554660 SHANK3Q9BYB0 1731 aa16.04■□□□□ 0.16
VPS33B-204ENST00000554660 SYTL4Q96C24 671 aaPredicted RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms