RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 EDC4Q6P2E9 1401 aaKnown RBP10.19□□□□□ -0.78
LIMA1-216ENST00000552909 ZBTB7CA1YPR0 619 aa10.19□□□□□ -0.78
LIMA1-216ENST00000552909 B4GALNT3Q6L9W6 998 aa10.19□□□□□ -0.78
LIMA1-216ENST00000552909 IPO9Q96P70 1041 aaKnown RBP10.19□□□□□ -0.78
LIMA1-216ENST00000552909 CARD14Q9BXL6 1004 aa10.19□□□□□ -0.78
LIMA1-216ENST00000552909 RTN4Q9NQC3 1192 aaKnown RBP10.19□□□□□ -0.78
LIMA1-216ENST00000552909 ANKRD36BQ8N2N9 1353 aa10.19□□□□□ -0.78
LIMA1-216ENST00000552909 MYOM1P52179 1685 aa10.18□□□□□ -0.78
LIMA1-216ENST00000552909 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.18□□□□□ -0.78
LIMA1-216ENST00000552909 NWD2Q9ULI1 1742 aa10.18□□□□□ -0.78
LIMA1-216ENST00000552909 COL14A1Q05707 1796 aaKnown RBP10.18□□□□□ -0.78
LIMA1-216ENST00000552909 FBLN1P23142 703 aa10.18□□□□□ -0.78
LIMA1-216ENST00000552909 SLIT3O75094 1523 aa10.17□□□□□ -0.78
LIMA1-216ENST00000552909 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.17□□□□□ -0.78
LIMA1-216ENST00000552909 VPS72Q15906 364 aa10.17□□□□□ -0.78
LIMA1-216ENST00000552909 STRN4Q9NRL3 753 aa10.17□□□□□ -0.78
LIMA1-216ENST00000552909 ZBTB47Q9UFB7 747 aaPredicted RBP10.17□□□□□ -0.78
LIMA1-216ENST00000552909 AXIN2Q9Y2T1 843 aa10.17□□□□□ -0.78
LIMA1-216ENST00000552909 CCDC9Q9Y3X0 531 aaKnown RBP10.17□□□□□ -0.78
LIMA1-216ENST00000552909 CPDO75976 1380 aa10.17□□□□□ -0.78
LIMA1-216ENST00000552909 RGS12O14924 1447 aa10.17□□□□□ -0.78
LIMA1-216ENST00000552909 CAMTA1Q9Y6Y1 1673 aa10.17□□□□□ -0.78
LIMA1-216ENST00000552909 FYB1O15117 783 aa10.16□□□□□ -0.78
LIMA1-216ENST00000552909 GLI3P10071 1580 aa10.16□□□□□ -0.78
LIMA1-216ENST00000552909 USP31Q70CQ4 1352 aa10.16□□□□□ -0.78
LIMA1-216ENST00000552909 NRAPQ86VF7 1730 aa10.16□□□□□ -0.78
LIMA1-216ENST00000552909 KIF7Q2M1P5 1343 aa10.16□□□□□ -0.78
LIMA1-216ENST00000552909 ARHGEF25Q86VW2 580 aa10.16□□□□□ -0.78
LIMA1-216ENST00000552909 KCNH5Q8NCM2 988 aa10.15□□□□□ -0.78
LIMA1-216ENST00000552909 GGNBP2Q9H3C7 697 aa10.15□□□□□ -0.78
LIMA1-216ENST00000552909 NFAT5O94916 1531 aa10.15□□□□□ -0.78
LIMA1-216ENST00000552909 OVOS2A0A0J9YW53 1432 aa10.15□□□□□ -0.78
LIMA1-216ENST00000552909 OVOS2Q6IE36 1432 aa10.15□□□□□ -0.78
LIMA1-216ENST00000552909 CCDC7Q96M83 1385 aa10.15□□□□□ -0.78
LIMA1-216ENST00000552909 LARP1Q6PKG0 1096 aaKnown RBP10.15□□□□□ -0.79
LIMA1-216ENST00000552909 USP35Q9P2H5 1018 aa10.15□□□□□ -0.79
LIMA1-216ENST00000552909 LMO7Q8WWI1 1683 aa10.15□□□□□ -0.79
LIMA1-216ENST00000552909 CDK12Q9NYV4 1490 aaPredicted RBP10.14□□□□□ -0.79
LIMA1-216ENST00000552909 EVA1CP58658 441 aa10.14□□□□□ -0.79
LIMA1-216ENST00000552909 SPATA31A5Q5VU36 1347 aa10.14□□□□□ -0.79
LIMA1-216ENST00000552909 SPATA31A7Q8IWB4 1347 aa10.14□□□□□ -0.79
LIMA1-216ENST00000552909 FAM98CQ17RN3 349 aaKnown RBP10.14□□□□□ -0.79
LIMA1-216ENST00000552909 PANK3Q9H999 370 aa10.14□□□□□ -0.79
LIMA1-216ENST00000552909 COL18A1P39060 1754 aa10.14□□□□□ -0.79
LIMA1-216ENST00000552909 RGPD5Q99666 1765 aa10.14□□□□□ -0.79
LIMA1-216ENST00000552909 NSD3Q9BZ95 1437 aa10.13□□□□□ -0.79
LIMA1-216ENST00000552909 AATKQ6ZMQ8 1374 aa10.13□□□□□ -0.79
LIMA1-216ENST00000552909 COG3Q96JB2 828 aa10.13□□□□□ -0.79
LIMA1-216ENST00000552909 USP54Q70EL1 1684 aa10.13□□□□□ -0.79
LIMA1-216ENST00000552909 COL5A2P05997 1499 aaPredicted RBP10.12□□□□□ -0.79
LIMA1-216ENST00000552909 ONECUT3O60422 494 aaPredicted RBP10.12□□□□□ -0.79
LIMA1-216ENST00000552909 SEPT12Q8IYM1 358 aa10.12□□□□□ -0.79
LIMA1-216ENST00000552909 SPATA31A1Q5TZJ5 1347 aa10.12□□□□□ -0.79
LIMA1-216ENST00000552909 SRCAPQ6ZRS2 3230 aa10.12□□□□□ -0.79
LIMA1-216ENST00000552909 BRWD3Q6RI45 1802 aa10.11□□□□□ -0.79
LIMA1-216ENST00000552909 A0A0G2JS52 829 aa10.11□□□□□ -0.79
LIMA1-216ENST00000552909 RRS1Q15050 365 aaKnown RBP10.11□□□□□ -0.79
LIMA1-216ENST00000552909 LTN1O94822 1766 aa10.11□□□□□ -0.79
LIMA1-216ENST00000552909 MAP3K19Q56UN5 1328 aa10.1□□□□□ -0.79
LIMA1-216ENST00000552909 KIF20BQ96Q89 1820 aa10.09□□□□□ -0.79
LIMA1-216ENST00000552909 FAM182BQ5T319 152 aa10.09□□□□□ -0.79
LIMA1-216ENST00000552909 TOM1L2Q6ZVM7 507 aa10.09□□□□□ -0.79
LIMA1-216ENST00000552909 UPF1Q92900 1129 aaKnown RBP eCLIP10.09□□□□□ -0.79
LIMA1-216ENST00000552909 WDR17Q8IZU2 1322 aa10.09□□□□□ -0.79
LIMA1-216ENST00000552909 TCP11L2Q8N4U5 519 aa10.08□□□□□ -0.8
LIMA1-216ENST00000552909 CRB1P82279 1406 aa10.08□□□□□ -0.8
LIMA1-216ENST00000552909 CGNL1Q0VF96 1302 aa10.08□□□□□ -0.8
LIMA1-216ENST00000552909 CSB-PGBD3P0DP91 1061 aa10.08□□□□□ -0.8
LIMA1-216ENST00000552909 IP6K1Q92551 441 aa10.08□□□□□ -0.8
LIMA1-216ENST00000552909 ERBB3P21860 1342 aa10.07□□□□□ -0.8
LIMA1-216ENST00000552909 ZBED9Q6R2W3 1325 aa10.07□□□□□ -0.8
LIMA1-216ENST00000552909 HOXC9P31274 260 aa10.07□□□□□ -0.8
LIMA1-216ENST00000552909 TNNT2P45379 298 aaPredicted RBP10.07□□□□□ -0.8
LIMA1-216ENST00000552909 AMPHP49418 695 aa10.07□□□□□ -0.8
LIMA1-216ENST00000552909 LTV1Q96GA3 475 aaPredicted RBP10.07□□□□□ -0.8
LIMA1-216ENST00000552909 NEFMP07197 916 aa10.07□□□□□ -0.8
LIMA1-216ENST00000552909 BARGINQ6ZT62 677 aa10.07□□□□□ -0.8
LIMA1-216ENST00000552909 KRT27Q7Z3Y8 459 aa10.07□□□□□ -0.8
LIMA1-216ENST00000552909 ANKRD24Q8TF21 1146 aa10.07□□□□□ -0.8
LIMA1-216ENST00000552909 EMILIN1Q9Y6C2 1016 aa10.07□□□□□ -0.8
LIMA1-216ENST00000552909 PER1O15534 1290 aaPredicted RBP10.06□□□□□ -0.8
LIMA1-216ENST00000552909 CNGB1Q14028 1251 aaPredicted RBP10.06□□□□□ -0.8
LIMA1-216ENST00000552909 THSD7AQ9UPZ6 1657 aa10.06□□□□□ -0.8
LIMA1-216ENST00000552909 HSP90AB2PQ58FF8 381 aa10.05□□□□□ -0.8
LIMA1-216ENST00000552909 CARD10Q9BWT7 1032 aa10.05□□□□□ -0.8
LIMA1-216ENST00000552909 NLRP2Q9NX02 1062 aa10.05□□□□□ -0.8
LIMA1-216ENST00000552909 THRAP3Q9Y2W1 955 aaKnown RBP10.05□□□□□ -0.8
LIMA1-216ENST00000552909 KNSTRNQ9Y448 316 aa10.05□□□□□ -0.8
LIMA1-216ENST00000552909 PPM1GO15355 546 aaPredicted RBP10.05□□□□□ -0.8
LIMA1-216ENST00000552909 EIF5BO60841 1220 aaKnown RBP10.05□□□□□ -0.8
LIMA1-216ENST00000552909 AMER1Q5JTC6 1135 aaPredicted RBP10.05□□□□□ -0.8
LIMA1-216ENST00000552909 MAP2P11137 1827 aaKnown RBP10.05□□□□□ -0.8
LIMA1-216ENST00000552909 PEAK1Q9H792 1746 aa10.04□□□□□ -0.8
LIMA1-216ENST00000552909 ABCC6O95255 1503 aa10.04□□□□□ -0.8
LIMA1-216ENST00000552909 POLKQ9UBT6 870 aa10.04□□□□□ -0.8
LIMA1-216ENST00000552909 BLMP54132 1417 aaPredicted RBP10.03□□□□□ -0.8
LIMA1-216ENST00000552909 RGPD2P0DJD1 1756 aa10.03□□□□□ -0.8
LIMA1-216ENST00000552909 PDE3BQ13370 1112 aa10.02□□□□□ -0.81
LIMA1-216ENST00000552909 CC2D1BQ5T0F9 858 aaKnown RBP10.02□□□□□ -0.81
LIMA1-216ENST00000552909 NBPF6Q5VWK0 638 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms