RNA–Protein interactions for RNA: ENST00000551920.1

GCN1-209, Transcript of GCN1, eIF2 alpha kinase activator homolog, humanhuman

TSL 3

Gene GCN1, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCN1-209ENST00000551920 CDK12Q9NYV4 1490 aaPredicted RBP22.57■■□□□ 1.2
GCN1-209ENST00000551920 GJD4Q96KN9 370 aaPredicted RBP22.56■■□□□ 1.2
GCN1-209ENST00000551920 ANKRD26Q9UPS8 1709 aa22.54■■□□□ 1.2
GCN1-209ENST00000551920 STRN4Q9NRL3 753 aa22.54■■□□□ 1.2
GCN1-209ENST00000551920 MAP3K19Q56UN5 1328 aa22.53■■□□□ 1.2
GCN1-209ENST00000551920 SPATA31A5Q5VU36 1347 aa22.53■■□□□ 1.2
GCN1-209ENST00000551920 SPATA31A7Q8IWB4 1347 aa22.53■■□□□ 1.2
GCN1-209ENST00000551920 LARP1Q6PKG0 1096 aaKnown RBP22.52■■□□□ 1.2
GCN1-209ENST00000551920 RGPD5Q99666 1765 aa22.51■■□□□ 1.19
GCN1-209ENST00000551920 PER1O15534 1290 aaPredicted RBP22.51■■□□□ 1.19
GCN1-209ENST00000551920 PEAK1Q9H792 1746 aa22.51■■□□□ 1.19
GCN1-209ENST00000551920 NSD2O96028 1365 aa22.5■■□□□ 1.19
GCN1-209ENST00000551920 RRS1Q15050 365 aaKnown RBP22.5■■□□□ 1.19
GCN1-209ENST00000551920 AMER1Q5JTC6 1135 aaPredicted RBP22.5■■□□□ 1.19
GCN1-209ENST00000551920 CCDC9Q9Y3X0 531 aaKnown RBP22.5■■□□□ 1.19
GCN1-209ENST00000551920 SPATA31A1Q5TZJ5 1347 aa22.5■■□□□ 1.19
GCN1-209ENST00000551920 KNSTRNQ9Y448 316 aa22.48■■□□□ 1.19
GCN1-209ENST00000551920 CRB1P82279 1406 aa22.48■■□□□ 1.19
GCN1-209ENST00000551920 THSD7AQ9UPZ6 1657 aa22.47■■□□□ 1.19
GCN1-209ENST00000551920 EVA1CP58658 441 aa22.47■■□□□ 1.19
GCN1-209ENST00000551920 WDR17Q8IZU2 1322 aa22.47■■□□□ 1.19
GCN1-209ENST00000551920 RTL1A6NKG5 1358 aa22.47■■□□□ 1.19
GCN1-209ENST00000551920 BLMP54132 1417 aaPredicted RBP22.47■■□□□ 1.19
GCN1-209ENST00000551920 ERBB3P21860 1342 aa22.46■■□□□ 1.19
GCN1-209ENST00000551920 FAM98CQ17RN3 349 aaKnown RBP22.45■■□□□ 1.18
GCN1-209ENST00000551920 IP6K1Q92551 441 aa22.45■■□□□ 1.18
GCN1-209ENST00000551920 ONECUT3O60422 494 aaPredicted RBP22.44■■□□□ 1.18
GCN1-209ENST00000551920 HOXC9P31274 260 aa22.44■■□□□ 1.18
GCN1-209ENST00000551920 USP35Q9P2H5 1018 aa22.44■■□□□ 1.18
GCN1-209ENST00000551920 EMILIN1Q9Y6C2 1016 aa22.44■■□□□ 1.18
GCN1-209ENST00000551920 TNNT2P45379 298 aaPredicted RBP22.42■■□□□ 1.18
GCN1-209ENST00000551920 AMPHP49418 695 aa22.41■■□□□ 1.18
GCN1-209ENST00000551920 SEPT12Q8IYM1 358 aa22.41■■□□□ 1.18
GCN1-209ENST00000551920 ANKRD24Q8TF21 1146 aa22.41■■□□□ 1.18
GCN1-209ENST00000551920 EP400Q96L91 3159 aa22.41■■□□□ 1.18
GCN1-209ENST00000551920 SMG6Q86US8 1419 aaKnown RBP22.4■■□□□ 1.18
GCN1-209ENST00000551920 FLT4P35916 1363 aa22.4■■□□□ 1.18
GCN1-209ENST00000551920 KIF24Q5T7B8 1368 aa22.4■■□□□ 1.18
GCN1-209ENST00000551920 NPC1L1Q9UHC9 1359 aa22.4■■□□□ 1.18
GCN1-209ENST00000551920 TOM1L2Q6ZVM7 507 aa22.4■■□□□ 1.18
GCN1-209ENST00000551920 TCP11L2Q8N4U5 519 aa22.4■■□□□ 1.18
GCN1-209ENST00000551920 BRWD3Q6RI45 1802 aa22.39■■□□□ 1.17
GCN1-209ENST00000551920 WNK3Q9BYP7 1800 aa22.39■■□□□ 1.17
GCN1-209ENST00000551920 CSB-PGBD3P0DP91 1061 aa22.39■■□□□ 1.17
GCN1-209ENST00000551920 POLKQ9UBT6 870 aa22.39■■□□□ 1.17
GCN1-209ENST00000551920 HSP90AB2PQ58FF8 381 aa22.38■■□□□ 1.17
GCN1-209ENST00000551920 CC2D1BQ5T0F9 858 aaKnown RBP22.38■■□□□ 1.17
GCN1-209ENST00000551920 BARGINQ6ZT62 677 aa22.38■■□□□ 1.17
GCN1-209ENST00000551920 MORC1Q86VD1 984 aa22.38■■□□□ 1.17
GCN1-209ENST00000551920 INSRP06213 1382 aa22.38■■□□□ 1.17
GCN1-209ENST00000551920 FAM208AQ9UK61 1670 aaKnown RBP22.37■■□□□ 1.17
GCN1-209ENST00000551920 LTV1Q96GA3 475 aaPredicted RBP22.37■■□□□ 1.17
GCN1-209ENST00000551920 CARD10Q9BWT7 1032 aa22.37■■□□□ 1.17
GCN1-209ENST00000551920 DISP2A7MBM2 1401 aa22.37■■□□□ 1.17
GCN1-209ENST00000551920 SOCS7O14512 581 aa22.36■■□□□ 1.17
GCN1-209ENST00000551920 LRRC37A3O60309 1634 aa22.35■■□□□ 1.17
GCN1-209ENST00000551920 A0A0G2JS52 829 aa22.35■■□□□ 1.17
GCN1-209ENST00000551920 MYT1Q01538 1121 aa22.35■■□□□ 1.17
GCN1-209ENST00000551920 THRAP3Q9Y2W1 955 aaKnown RBP22.35■■□□□ 1.17
GCN1-209ENST00000551920 MAP2P11137 1827 aaKnown RBP22.35■■□□□ 1.17
GCN1-209ENST00000551920 PARP4Q9UKK3 1724 aaKnown RBP22.34■■□□□ 1.17
GCN1-209ENST00000551920 PPM1GO15355 546 aaPredicted RBP22.34■■□□□ 1.17
GCN1-209ENST00000551920 NLRP2Q9NX02 1062 aa22.34■■□□□ 1.17
GCN1-209ENST00000551920 CNGB1Q14028 1251 aaPredicted RBP22.33■■□□□ 1.17
GCN1-209ENST00000551920 RGPD2P0DJD1 1756 aa22.33■■□□□ 1.16
GCN1-209ENST00000551920 DDX10Q13206 875 aaKnown RBP22.29■■□□□ 1.16
GCN1-209ENST00000551920 NBPF6Q5VWK0 638 aa22.29■■□□□ 1.16
GCN1-209ENST00000551920 KRT27Q7Z3Y8 459 aa22.29■■□□□ 1.16
GCN1-209ENST00000551920 NBPF4Q96M43 638 aa22.29■■□□□ 1.16
GCN1-209ENST00000551920 NCAPD2Q15021 1401 aa22.28■■□□□ 1.16
GCN1-209ENST00000551920 MEGF6O75095 1541 aa22.27■■□□□ 1.16
GCN1-209ENST00000551920 FAM182BQ5T319 152 aa22.27■■□□□ 1.16
GCN1-209ENST00000551920 USHBP1Q8N6Y0 703 aa22.27■■□□□ 1.16
GCN1-209ENST00000551920 TNS2Q63HR2 1409 aa22.26■■□□□ 1.15
GCN1-209ENST00000551920 EIF4A2Q14240 407 aaKnown RBP22.26■■□□□ 1.15
GCN1-209ENST00000551920 COL3A1P02461 1466 aaPredicted RBP22.23■■□□□ 1.15
GCN1-209ENST00000551920 IL2RBP14784 551 aa22.23■■□□□ 1.15
GCN1-209ENST00000551920 MTHFSP49914 203 aa22.23■■□□□ 1.15
GCN1-209ENST00000551920 UPF1Q92900 1129 aaKnown RBP eCLIP22.23■■□□□ 1.15
GCN1-209ENST00000551920 CDCA7Q9BWT1 371 aaPredicted RBP22.23■■□□□ 1.15
GCN1-209ENST00000551920 PARD3Q8TEW0 1356 aa22.22■■□□□ 1.15
GCN1-209ENST00000551920 ZNF316A6NFI3 1004 aaPredicted RBP22.21■■□□□ 1.15
GCN1-209ENST00000551920 DDB1Q16531 1140 aa22.21■■□□□ 1.15
GCN1-209ENST00000551920 EYA1Q99502 592 aa22.21■■□□□ 1.15
GCN1-209ENST00000551920 OVOS2A0A0G2JMS6 1433 aa22.21■■□□□ 1.15
GCN1-209ENST00000551920 RGPD1P0DJD0 1748 aa22.2■■□□□ 1.14
GCN1-209ENST00000551920 PDE3BQ13370 1112 aa22.19■■□□□ 1.14
GCN1-209ENST00000551920 SHANK3Q9BYB0 1731 aa22.19■■□□□ 1.14
GCN1-209ENST00000551920 IGSF1Q8N6C5 1336 aa22.18■■□□□ 1.14
GCN1-209ENST00000551920 MARCH10Q8NA82 808 aaPredicted RBP22.18■■□□□ 1.14
GCN1-209ENST00000551920 PPP2R1AP30153 589 aa22.17■■□□□ 1.14
GCN1-209ENST00000551920 IL13P35225 146 aa22.17■■□□□ 1.14
GCN1-209ENST00000551920 EXOC5O00471 708 aa22.14■■□□□ 1.13
GCN1-209ENST00000551920 AEBP1Q8IUX7 1158 aa22.13■■□□□ 1.13
GCN1-209ENST00000551920 RAPGEF4Q8WZA2 1011 aa22.13■■□□□ 1.13
GCN1-209ENST00000551920 PKD1L3Q7Z443 1732 aa22.13■■□□□ 1.13
GCN1-209ENST00000551920 TNS1Q9HBL0 1735 aaKnown RBP22.13■■□□□ 1.13
GCN1-209ENST00000551920 BCL9O00512 1426 aa22.13■■□□□ 1.13
GCN1-209ENST00000551920 FAM196AQ6ZSG2 479 aa22.12■■□□□ 1.13
GCN1-209ENST00000551920 KDRP35968 1356 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms