RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-205ENST00000550075 CGNL1Q0VF96 1302 aa35.79■■■■□ 3.32
CPSF6-205ENST00000550075 KIF7Q2M1P5 1343 aa35.79■■■■□ 3.32
CPSF6-205ENST00000550075 A0A0G2JS52 829 aa35.78■■■■□ 3.32
CPSF6-205ENST00000550075 MYT1Q01538 1121 aa35.78■■■■□ 3.32
CPSF6-205ENST00000550075 GGNBP2Q9H3C7 697 aa35.78■■■■□ 3.32
CPSF6-205ENST00000550075 RGPD5Q99666 1765 aa35.76■■■■□ 3.32
CPSF6-205ENST00000550075 CRB1P82279 1406 aa35.76■■■■□ 3.32
CPSF6-205ENST00000550075 ONECUT3O60422 494 aaPredicted RBP35.76■■■■□ 3.32
CPSF6-205ENST00000550075 FAM98CQ17RN3 349 aaKnown RBP35.76■■■■□ 3.32
CPSF6-205ENST00000550075 LARP1Q6PKG0 1096 aaKnown RBP35.76■■■■□ 3.32
CPSF6-205ENST00000550075 SEPT12Q8IYM1 358 aa35.76■■■■□ 3.32
CPSF6-205ENST00000550075 THSD7AQ9UPZ6 1657 aa35.73■■■■□ 3.31
CPSF6-205ENST00000550075 PANK3Q9H999 370 aa35.73■■■■□ 3.31
CPSF6-205ENST00000550075 WDR17Q8IZU2 1322 aa35.73■■■■□ 3.31
CPSF6-205ENST00000550075 BRWD3Q6RI45 1802 aa35.73■■■■□ 3.31
CPSF6-205ENST00000550075 AXIN2Q9Y2T1 843 aa35.72■■■■□ 3.31
CPSF6-205ENST00000550075 USP35Q9P2H5 1018 aa35.71■■■■□ 3.31
CPSF6-205ENST00000550075 BLMP54132 1417 aaPredicted RBP35.7■■■■□ 3.31
CPSF6-205ENST00000550075 TCP11L2Q8N4U5 519 aa35.7■■■■□ 3.31
CPSF6-205ENST00000550075 ANKRD26Q9UPS8 1709 aa35.7■■■■□ 3.31
CPSF6-205ENST00000550075 THRAP3Q9Y2W1 955 aaKnown RBP35.7■■■■□ 3.31
CPSF6-205ENST00000550075 CSB-PGBD3P0DP91 1061 aa35.69■■■■□ 3.3
CPSF6-205ENST00000550075 TOM1L2Q6ZVM7 507 aa35.69■■■■□ 3.3
CPSF6-205ENST00000550075 CCDC7Q96M83 1385 aa35.68■■■■□ 3.3
CPSF6-205ENST00000550075 RTL1A6NKG5 1358 aa35.67■■■■□ 3.3
CPSF6-205ENST00000550075 BARGINQ6ZT62 677 aa35.67■■■■□ 3.3
CPSF6-205ENST00000550075 NSD2O96028 1365 aa35.65■■■■□ 3.3
CPSF6-205ENST00000550075 MAP3K19Q56UN5 1328 aa35.65■■■■□ 3.3
CPSF6-205ENST00000550075 ERBB3P21860 1342 aa35.64■■■■□ 3.3
CPSF6-205ENST00000550075 AMPHP49418 695 aa35.64■■■■□ 3.3
CPSF6-205ENST00000550075 KRT27Q7Z3Y8 459 aa35.63■■■■□ 3.29
CPSF6-205ENST00000550075 IP6K1Q92551 441 aa35.63■■■■□ 3.29
CPSF6-205ENST00000550075 FAM208AQ9UK61 1670 aaKnown RBP35.62■■■■□ 3.29
CPSF6-205ENST00000550075 KNSTRNQ9Y448 316 aa35.62■■■■□ 3.29
CPSF6-205ENST00000550075 WNK3Q9BYP7 1800 aa35.61■■■■□ 3.29
CPSF6-205ENST00000550075 UPF1Q92900 1129 aaKnown RBP eCLIP35.6■■■■□ 3.29
CPSF6-205ENST00000550075 CARD10Q9BWT7 1032 aa35.6■■■■□ 3.29
CPSF6-205ENST00000550075 WASHC2AQ641Q2 1341 aa35.59■■■■□ 3.29
CPSF6-205ENST00000550075 ANKRD24Q8TF21 1146 aa35.59■■■■□ 3.29
CPSF6-205ENST00000550075 PARP4Q9UKK3 1724 aaKnown RBP35.59■■■■□ 3.29
CPSF6-205ENST00000550075 KIF24Q5T7B8 1368 aa35.59■■■■□ 3.29
CPSF6-205ENST00000550075 RRS1Q15050 365 aaKnown RBP35.58■■■■□ 3.29
CPSF6-205ENST00000550075 HOXC9P31274 260 aa35.57■■■■□ 3.28
CPSF6-205ENST00000550075 FBLN1P23142 703 aa35.56■■■■□ 3.28
CPSF6-205ENST00000550075 CDCA7Q9BWT1 371 aaPredicted RBP35.55■■■■□ 3.28
CPSF6-205ENST00000550075 FLT4P35916 1363 aa35.54■■■■□ 3.28
CPSF6-205ENST00000550075 ZEB1P37275 1124 aaPredicted RBP35.54■■■■□ 3.28
CPSF6-205ENST00000550075 NLRP2Q9NX02 1062 aa35.54■■■■□ 3.28
CPSF6-205ENST00000550075 SMG6Q86US8 1419 aaKnown RBP35.54■■■■□ 3.28
CPSF6-205ENST00000550075 PEAK1Q9H792 1746 aa35.5■■■■□ 3.27
CPSF6-205ENST00000550075 PDE3BQ13370 1112 aa35.5■■■■□ 3.27
CPSF6-205ENST00000550075 LRRC37A3O60309 1634 aa35.5■■■■□ 3.27
CPSF6-205ENST00000550075 LTV1Q96GA3 475 aaPredicted RBP35.49■■■■□ 3.27
CPSF6-205ENST00000550075 MAP2P11137 1827 aaKnown RBP35.48■■■■□ 3.27
CPSF6-205ENST00000550075 INSRP06213 1382 aa35.48■■■■□ 3.27
CPSF6-205ENST00000550075 EP400Q96L91 3159 aa35.48■■■■□ 3.27
CPSF6-205ENST00000550075 DISP2A7MBM2 1401 aa35.47■■■■□ 3.27
CPSF6-205ENST00000550075 MORC1Q86VD1 984 aa35.46■■■■□ 3.27
CPSF6-205ENST00000550075 CCDC125Q86Z20 511 aa35.46■■■■□ 3.27
CPSF6-205ENST00000550075 EMILIN1Q9Y6C2 1016 aa35.46■■■■□ 3.27
CPSF6-205ENST00000550075 DDB1Q16531 1140 aa35.44■■■■□ 3.26
CPSF6-205ENST00000550075 TNNT2P45379 298 aaPredicted RBP35.43■■■■□ 3.26
CPSF6-205ENST00000550075 AMER1Q5JTC6 1135 aaPredicted RBP35.43■■■■□ 3.26
CPSF6-205ENST00000550075 PPM1GO15355 546 aaPredicted RBP35.42■■■■□ 3.26
CPSF6-205ENST00000550075 PER1O15534 1290 aaPredicted RBP35.39■■■■□ 3.26
CPSF6-205ENST00000550075 HSP90AB2PQ58FF8 381 aa35.39■■■■□ 3.26
CPSF6-205ENST00000550075 TNS2Q63HR2 1409 aa35.39■■■■□ 3.26
CPSF6-205ENST00000550075 RGPD2P0DJD1 1756 aa35.38■■■■□ 3.25
CPSF6-205ENST00000550075 IL2RBP14784 551 aa35.38■■■■□ 3.25
CPSF6-205ENST00000550075 SF3B2Q13435 895 aaKnown RBP35.38■■■■□ 3.25
CPSF6-205ENST00000550075 FAM196AQ6ZSG2 479 aa35.38■■■■□ 3.25
CPSF6-205ENST00000550075 POLKQ9UBT6 870 aa35.38■■■■□ 3.25
CPSF6-205ENST00000550075 RGPD1P0DJD0 1748 aa35.37■■■■□ 3.25
CPSF6-205ENST00000550075 NPC1L1Q9UHC9 1359 aa35.37■■■■□ 3.25
CPSF6-205ENST00000550075 OVOS2A0A0G2JMS6 1433 aa35.36■■■■□ 3.25
CPSF6-205ENST00000550075 FAM182BQ5T319 152 aa35.36■■■■□ 3.25
CPSF6-205ENST00000550075 EXOC5O00471 708 aa35.34■■■■□ 3.25
CPSF6-205ENST00000550075 CC2D1BQ5T0F9 858 aaKnown RBP35.29■■■■□ 3.24
CPSF6-205ENST00000550075 NBPF6Q5VWK0 638 aa35.28■■■■□ 3.24
CPSF6-205ENST00000550075 NBPF4Q96M43 638 aa35.28■■■■□ 3.24
CPSF6-205ENST00000550075 TNS1Q9HBL0 1735 aaKnown RBP35.26■■■■□ 3.24
CPSF6-205ENST00000550075 RAPGEF4Q8WZA2 1011 aa35.24■■■■□ 3.23
CPSF6-205ENST00000550075 MEGF6O75095 1541 aa35.23■■■■□ 3.23
CPSF6-205ENST00000550075 BAG6P46379 1132 aa35.23■■■■□ 3.23
CPSF6-205ENST00000550075 USHBP1Q8N6Y0 703 aa35.23■■■■□ 3.23
CPSF6-205ENST00000550075 MARCH10Q8NA82 808 aaPredicted RBP35.23■■■■□ 3.23
CPSF6-205ENST00000550075 BCL9O00512 1426 aa35.23■■■■□ 3.23
CPSF6-205ENST00000550075 TRIM37O94972 964 aa35.21■■■■□ 3.23
CPSF6-205ENST00000550075 NCAPD2Q15021 1401 aa35.21■■■■□ 3.23
CPSF6-205ENST00000550075 TATP17735 454 aaPredicted RBP35.19■■■■□ 3.22
CPSF6-205ENST00000550075 EIF4A2Q14240 407 aaKnown RBP35.19■■■■□ 3.22
CPSF6-205ENST00000550075 SBF2Q86WG5 1849 aa35.19■■■■□ 3.22
CPSF6-205ENST00000550075 CNGB1Q14028 1251 aaPredicted RBP35.17■■■■□ 3.22
CPSF6-205ENST00000550075 ZCRB1Q8TBF4 217 aaKnown RBP35.15■■■■□ 3.22
CPSF6-205ENST00000550075 EYA1Q99502 592 aa35.15■■■■□ 3.22
CPSF6-205ENST00000550075 DEFB132Q7Z7B7 95 aa35.14■■■■□ 3.22
CPSF6-205ENST00000550075 SHANK3Q9BYB0 1731 aa35.12■■■■□ 3.21
CPSF6-205ENST00000550075 MTHFSP49914 203 aa35.12■■■■□ 3.21
CPSF6-205ENST00000550075 DDX54Q8TDD1 881 aaKnown RBP35.11■■■■□ 3.21
CPSF6-205ENST00000550075 IGSF1Q8N6C5 1336 aa35.1■■■■□ 3.21
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms