RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 NUTM2EB1AL46 878 aaPredicted RBP9.05□□□□□ -0.96
VPS29-205ENST00000548539 IRS1P35568 1242 aa9.05□□□□□ -0.96
VPS29-205ENST00000548539 RNFT1Q5M7Z0 435 aa9.05□□□□□ -0.96
VPS29-205ENST00000548539 NUTM2DQ5VT03 806 aaPredicted RBP9.05□□□□□ -0.96
VPS29-205ENST00000548539 NUTM2AQ8IVF1 878 aaPredicted RBP9.05□□□□□ -0.96
VPS29-205ENST00000548539 DNMT3AQ9Y6K1 912 aaPredicted RBP9.05□□□□□ -0.96
VPS29-205ENST00000548539 ZMYND10O75800 440 aa9.04□□□□□ -0.96
VPS29-205ENST00000548539 IGHA1P01876 353 aa9.04□□□□□ -0.96
VPS29-205ENST00000548539 MARSP56192 900 aaKnown RBP9.04□□□□□ -0.96
VPS29-205ENST00000548539 SH3BP5LQ7L8J4 393 aa9.04□□□□□ -0.96
VPS29-205ENST00000548539 PGPEP1Q9NXJ5 209 aa9.04□□□□□ -0.96
VPS29-205ENST00000548539 SPINT1O43278 529 aa9.03□□□□□ -0.96
VPS29-205ENST00000548539 SLURP2P0DP57 97 aa9.03□□□□□ -0.96
VPS29-205ENST00000548539 PPP1R26Q5T8A7 1209 aaPredicted RBP9.03□□□□□ -0.96
VPS29-205ENST00000548539 VWA5B2Q8N398 1253 aa9.03□□□□□ -0.96
VPS29-205ENST00000548539 CDC14CA4D256 554 aa9.02□□□□□ -0.97
VPS29-205ENST00000548539 SLC35F4A4IF30 521 aa9.02□□□□□ -0.97
VPS29-205ENST00000548539 CBLBQ13191 982 aa9.02□□□□□ -0.97
VPS29-205ENST00000548539 SV2AQ7L0J3 742 aa9.02□□□□□ -0.97
VPS29-205ENST00000548539 WHAMMQ8TF30 809 aa9.02□□□□□ -0.97
VPS29-205ENST00000548539 CARD14Q9BXL6 1004 aa9.02□□□□□ -0.97
VPS29-205ENST00000548539 ARHGEF15O94989 841 aa9.01□□□□□ -0.97
VPS29-205ENST00000548539 ITGA6P23229 1130 aa9.01□□□□□ -0.97
VPS29-205ENST00000548539 KANK3Q6NY19 840 aa9.01□□□□□ -0.97
VPS29-205ENST00000548539 Q6ZVU0 165 aa9.01□□□□□ -0.97
VPS29-205ENST00000548539 PARP9Q8IXQ6 854 aa9.01□□□□□ -0.97
VPS29-205ENST00000548539 FOXK2Q01167 660 aa9□□□□□ -0.97
VPS29-205ENST00000548539 HELBQ8NG08 1087 aaPredicted RBP9□□□□□ -0.97
VPS29-205ENST00000548539 SCARF2Q96GP6 870 aaPredicted RBP9□□□□□ -0.97
VPS29-205ENST00000548539 QPCTQ16769 361 aa8.99□□□□□ -0.97
VPS29-205ENST00000548539 ERFEQ4G0M1 354 aa8.99□□□□□ -0.97
VPS29-205ENST00000548539 GPKOWQ92917 476 aaPredicted RBP eCLIP8.99□□□□□ -0.97
VPS29-205ENST00000548539 LIMD1Q9UGP4 676 aa8.98□□□□□ -0.97
VPS29-205ENST00000548539 LILRB3O75022 631 aa8.97□□□□□ -0.97
VPS29-205ENST00000548539 DHX9Q08211 1270 aaKnown RBP8.96□□□□□ -0.98
VPS29-205ENST00000548539 TUSC1Q2TAM9 212 aa8.96□□□□□ -0.98
VPS29-205ENST00000548539 ZC3H15Q8WU90 426 aaKnown RBP8.96□□□□□ -0.98
VPS29-205ENST00000548539 CTSOP43234 321 aaPredicted RBP8.95□□□□□ -0.98
VPS29-205ENST00000548539 RELBQ01201 579 aa8.95□□□□□ -0.98
VPS29-205ENST00000548539 MAP3K10Q02779 954 aa8.95□□□□□ -0.98
VPS29-205ENST00000548539 MYSM1Q5VVJ2 828 aa8.95□□□□□ -0.98
VPS29-205ENST00000548539 AGBL1Q96MI9 1066 aa8.95□□□□□ -0.98
VPS29-205ENST00000548539 KCTD15Q96SI1 283 aaPredicted RBP8.95□□□□□ -0.98
VPS29-205ENST00000548539 POLMQ9NP87 494 aaPredicted RBP8.95□□□□□ -0.98
VPS29-205ENST00000548539 TRIM66O15016 1216 aa8.94□□□□□ -0.98
VPS29-205ENST00000548539 ADAMTS2O95450 1211 aa8.94□□□□□ -0.98
VPS29-205ENST00000548539 SLC10A4Q96EP9 437 aa8.94□□□□□ -0.98
VPS29-205ENST00000548539 INSM2Q96T92 566 aaPredicted RBP8.94□□□□□ -0.98
VPS29-205ENST00000548539 ARHGAP9Q9BRR9 750 aa8.94□□□□□ -0.98
VPS29-205ENST00000548539 CDV3Q9UKY7 258 aaKnown RBP8.94□□□□□ -0.98
VPS29-205ENST00000548539 RTL5Q5HYW3 569 aaPredicted RBP8.93□□□□□ -0.98
VPS29-205ENST00000548539 PDXDC2PQ6P474 469 aa8.93□□□□□ -0.98
VPS29-205ENST00000548539 SRSF11Q05519 484 aaKnown RBP8.92□□□□□ -0.98
VPS29-205ENST00000548539 LYPD4Q6UWN0 246 aa8.92□□□□□ -0.98
VPS29-205ENST00000548539 ZBTB33Q86T24 672 aa8.91□□□□□ -0.98
VPS29-205ENST00000548539 ZNF395Q9H8N7 513 aaPredicted RBP8.91□□□□□ -0.98
VPS29-205ENST00000548539 ENAMQ9NRM1 1142 aa8.91□□□□□ -0.98
VPS29-205ENST00000548539 RNF217Q8TC41 542 aa8.9□□□□□ -0.98
VPS29-205ENST00000548539 AK7Q96M32 723 aa8.9□□□□□ -0.98
VPS29-205ENST00000548539 SENP3-EIF4A1A0A087X0R7 540 aa8.89□□□□□ -0.99
VPS29-205ENST00000548539 CELA2BP08218 269 aaPredicted RBP8.89□□□□□ -0.99
VPS29-205ENST00000548539 INTS6LQ5JSJ4 861 aaKnown RBP8.89□□□□□ -0.99
VPS29-205ENST00000548539 FKBPLQ9UIM3 349 aa8.88□□□□□ -0.99
VPS29-205ENST00000548539 MSTNO14793 375 aa8.87□□□□□ -0.99
VPS29-205ENST00000548539 CTDSPL2Q05D32 466 aa8.87□□□□□ -0.99
VPS29-205ENST00000548539 PHF20L1A8MW92 1017 aa8.86□□□□□ -0.99
VPS29-205ENST00000548539 CLK2P49760 499 aaKnown RBP8.86□□□□□ -0.99
VPS29-205ENST00000548539 LYSMD3Q7Z3D4 306 aa8.85□□□□□ -0.99
VPS29-205ENST00000548539 PTK2Q05397 1052 aa8.84□□□□□ -0.99
VPS29-205ENST00000548539 GAS6Q14393 721 aa8.84□□□□□ -0.99
VPS29-205ENST00000548539 PLA2G4EQ3MJ16 856 aa8.84□□□□□ -0.99
VPS29-205ENST00000548539 BEND7Q8N7W2 519 aaPredicted RBP8.84□□□□□ -0.99
VPS29-205ENST00000548539 TMPRSS4Q9NRS4 437 aa8.84□□□□□ -0.99
VPS29-205ENST00000548539 ZC3H4Q9UPT8 1303 aaKnown RBP8.83□□□□□ -1
VPS29-205ENST00000548539 ADAM23O75077 832 aa8.83□□□□□ -1
VPS29-205ENST00000548539 ADH1AP07327 375 aa8.83□□□□□ -1
VPS29-205ENST00000548539 NBPF20Q3BBV1 942 aa8.83□□□□□ -1
VPS29-205ENST00000548539 XP32Q5T750 250 aa8.83□□□□□ -1
VPS29-205ENST00000548539 ZNF784Q8NCA9 323 aaPredicted RBP8.83□□□□□ -1
VPS29-205ENST00000548539 DCAF5Q96JK2 942 aa8.83□□□□□ -1
VPS29-205ENST00000548539 RSPH6AQ9H0K4 717 aa8.83□□□□□ -1
VPS29-205ENST00000548539 CUEDC1Q9NWM3 386 aaPredicted RBP8.83□□□□□ -1
VPS29-205ENST00000548539 CNTNAP5Q8WYK1 1306 aa8.82□□□□□ -1
VPS29-205ENST00000548539 PTGIRP43119 386 aa8.82□□□□□ -1
VPS29-205ENST00000548539 RAB15P59190 212 aa8.82□□□□□ -1
VPS29-205ENST00000548539 FOXD4L5Q5VV16 416 aaPredicted RBP8.82□□□□□ -1
VPS29-205ENST00000548539 FOXR1Q6PIV2 292 aa8.82□□□□□ -1
VPS29-205ENST00000548539 PODNQ7Z5L7 613 aa8.82□□□□□ -1
VPS29-205ENST00000548539 LRRN4Q8WUT4 740 aa8.82□□□□□ -1
VPS29-205ENST00000548539 SPOCK3Q9BQ16 436 aa8.82□□□□□ -1
VPS29-205ENST00000548539 MBIPQ9NS73 344 aa8.82□□□□□ -1
VPS29-205ENST00000548539 POLR3EQ9NVU0 708 aa8.82□□□□□ -1
VPS29-205ENST00000548539 PDE4DQ08499 809 aa8.81□□□□□ -1
VPS29-205ENST00000548539 NEDD1Q8NHV4 660 aa8.81□□□□□ -1
VPS29-205ENST00000548539 ADAM32Q8TC27 787 aa8.81□□□□□ -1
VPS29-205ENST00000548539 ADD1P35611 737 aaKnown RBP8.8□□□□□ -1
VPS29-205ENST00000548539 NR6A1Q15406 480 aa8.8□□□□□ -1
VPS29-205ENST00000548539 PRICKLE2Q7Z3G6 844 aa8.8□□□□□ -1
VPS29-205ENST00000548539 GMCL1Q96IK5 515 aa8.8□□□□□ -1
VPS29-205ENST00000548539 GPSM3Q9Y4H4 160 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms