RNA–Protein interactions for RNA: ENST00000547856.5

RAPGEF3-216, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 2,659 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-216ENST00000547856 NPATQ14207 1427 aa17.61■□□□□ 0.41
RAPGEF3-216ENST00000547856 KIF16BQ96L93 1317 aa17.61■□□□□ 0.41
RAPGEF3-216ENST00000547856 LRSAM1Q6UWE0 723 aa17.61■□□□□ 0.41
RAPGEF3-216ENST00000547856 TRIM27P14373 513 aa17.61■□□□□ 0.41
RAPGEF3-216ENST00000547856 U2AF2P26368 475 aaKnown RBP eCLIP17.6■□□□□ 0.41
RAPGEF3-216ENST00000547856 TBC1D9Q6ZT07 1266 aa17.6■□□□□ 0.41
RAPGEF3-216ENST00000547856 KDM5AP29375 1690 aaKnown RBP17.6■□□□□ 0.41
RAPGEF3-216ENST00000547856 NRXN1Q9ULB1 1477 aa17.59■□□□□ 0.41
RAPGEF3-216ENST00000547856 ZNF771Q7L3S4 317 aaPredicted RBP17.59■□□□□ 0.41
RAPGEF3-216ENST00000547856 ADGRB3O60242 1522 aa17.59■□□□□ 0.41
RAPGEF3-216ENST00000547856 RAPGEF3O95398 923 aa17.59■□□□□ 0.41
RAPGEF3-216ENST00000547856 CHGAP10645 457 aaKnown RBP17.59■□□□□ 0.41
RAPGEF3-216ENST00000547856 NGEFQ8N5V2 710 aa17.59■□□□□ 0.41
RAPGEF3-216ENST00000547856 BCL2L12Q9HB09 334 aa17.59■□□□□ 0.41
RAPGEF3-216ENST00000547856 KIF3AQ9Y496 699 aa17.59■□□□□ 0.41
RAPGEF3-216ENST00000547856 NOS1P29475 1434 aa17.59■□□□□ 0.41
RAPGEF3-216ENST00000547856 ERVK-7P63135 1459 aa17.58■□□□□ 0.41
RAPGEF3-216ENST00000547856 ANKRD45Q5TZF3 282 aa17.58■□□□□ 0.41
RAPGEF3-216ENST00000547856 CHD1LQ86WJ1 897 aa17.58■□□□□ 0.41
RAPGEF3-216ENST00000547856 PDCL2Q8N4E4 241 aa17.58■□□□□ 0.41
RAPGEF3-216ENST00000547856 NUCB1Q02818 461 aa17.58■□□□□ 0.4
RAPGEF3-216ENST00000547856 RUNDC1Q96C34 613 aa17.58■□□□□ 0.4
RAPGEF3-216ENST00000547856 NUCB2P80303 420 aa17.57■□□□□ 0.4
RAPGEF3-216ENST00000547856 NOLC1Q14978 699 aaKnown RBP eCLIP17.57■□□□□ 0.4
RAPGEF3-216ENST00000547856 ZGPATQ8N5A5 531 aaKnown RBP17.57■□□□□ 0.4
RAPGEF3-216ENST00000547856 TTC12Q9H892 705 aaPredicted RBP17.57■□□□□ 0.4
RAPGEF3-216ENST00000547856 TPRNQ4KMQ1 711 aa17.57■□□□□ 0.4
RAPGEF3-216ENST00000547856 TMEM57Q8N5G2 664 aa17.57■□□□□ 0.4
RAPGEF3-216ENST00000547856 DDX19BQ9UMR2 479 aa17.57■□□□□ 0.4
RAPGEF3-216ENST00000547856 PRIMPOLQ96LW4 560 aa17.56■□□□□ 0.4
RAPGEF3-216ENST00000547856 NOB1Q9ULX3 412 aaKnown RBP17.55■□□□□ 0.4
RAPGEF3-216ENST00000547856 PPLO60437 1756 aa17.55■□□□□ 0.4
RAPGEF3-216ENST00000547856 HMGN5P82970 282 aaKnown RBP17.55■□□□□ 0.4
RAPGEF3-216ENST00000547856 CARD14Q9BXL6 1004 aa17.55■□□□□ 0.4
RAPGEF3-216ENST00000547856 CDK11BP21127 795 aaKnown RBP17.55■□□□□ 0.4
RAPGEF3-216ENST00000547856 BMP2KLQ5H9B9 411 aa17.55■□□□□ 0.4
RAPGEF3-216ENST00000547856 IPO4Q8TEX9 1081 aaKnown RBP17.55■□□□□ 0.4
RAPGEF3-216ENST00000547856 ABCC3O15438 1527 aa17.54■□□□□ 0.4
RAPGEF3-216ENST00000547856 WDR63Q8IWG1 891 aa17.54■□□□□ 0.4
RAPGEF3-216ENST00000547856 EXOSC9Q06265 439 aaKnown RBP17.54■□□□□ 0.4
RAPGEF3-216ENST00000547856 FOXD4L6Q3SYB3 417 aaPredicted RBP17.54■□□□□ 0.4
RAPGEF3-216ENST00000547856 FOXD4L3Q6VB84 417 aaPredicted RBP17.54■□□□□ 0.4
RAPGEF3-216ENST00000547856 SSH1Q8WYL5 1049 aa17.54■□□□□ 0.4
RAPGEF3-216ENST00000547856 SIGLEC1Q9BZZ2 1709 aa17.53■□□□□ 0.4
RAPGEF3-216ENST00000547856 MYO3AQ8NEV4 1616 aa17.53■□□□□ 0.4
RAPGEF3-216ENST00000547856 C1orf115Q9H7X2 142 aa17.53■□□□□ 0.4
RAPGEF3-216ENST00000547856 NEO1Q92859 1461 aa17.52■□□□□ 0.4
RAPGEF3-216ENST00000547856 CYP2E1P05181 493 aaPredicted RBP17.52■□□□□ 0.4
RAPGEF3-216ENST00000547856 PIBF1Q8WXW3 757 aa17.52■□□□□ 0.4
RAPGEF3-216ENST00000547856 NPC1L1Q9UHC9 1359 aa17.52■□□□□ 0.4
RAPGEF3-216ENST00000547856 ATF7IPQ6VMQ6 1270 aa17.52■□□□□ 0.39
RAPGEF3-216ENST00000547856 AEBP2Q6ZN18 517 aaPredicted RBP17.52■□□□□ 0.39
RAPGEF3-216ENST00000547856 ZDHHC9Q9Y397 364 aa17.52■□□□□ 0.39
RAPGEF3-216ENST00000547856 TSPY26PQ9H489 355 aa17.51■□□□□ 0.39
RAPGEF3-216ENST00000547856 SETBP1Q9Y6X0 1596 aa17.51■□□□□ 0.39
RAPGEF3-216ENST00000547856 CAMSAP1Q5T5Y3 1602 aa17.51■□□□□ 0.39
RAPGEF3-216ENST00000547856 GTF2F1P35269 517 aaKnown RBP eCLIP17.51■□□□□ 0.39
RAPGEF3-216ENST00000547856 ZBTB40Q9NUA8 1239 aa17.51■□□□□ 0.39
RAPGEF3-216ENST00000547856 USP25Q9UHP3 1055 aa17.51■□□□□ 0.39
RAPGEF3-216ENST00000547856 PLCB2Q00722 1185 aa17.5■□□□□ 0.39
RAPGEF3-216ENST00000547856 TRAK1Q9UPV9 953 aa17.5■□□□□ 0.39
RAPGEF3-216ENST00000547856 DIP2CQ9Y2E4 1556 aa17.5■□□□□ 0.39
RAPGEF3-216ENST00000547856 TMEM132EQ6IEE7 984 aa17.5■□□□□ 0.39
RAPGEF3-216ENST00000547856 C14orf93Q9H972 538 aaKnown RBP17.5■□□□□ 0.39
RAPGEF3-216ENST00000547856 SBNO2Q9Y2G9 1366 aa17.49■□□□□ 0.39
RAPGEF3-216ENST00000547856 MORC1Q86VD1 984 aa17.49■□□□□ 0.39
RAPGEF3-216ENST00000547856 ADGRB1O14514 1584 aa17.48■□□□□ 0.39
RAPGEF3-216ENST00000547856 RICTORQ6R327 1708 aa17.48■□□□□ 0.39
RAPGEF3-216ENST00000547856 RIOK3O14730 519 aaKnown RBP17.47■□□□□ 0.39
RAPGEF3-216ENST00000547856 KCNJ4P48050 445 aa17.47■□□□□ 0.39
RAPGEF3-216ENST00000547856 RABEP1Q15276 862 aa17.47■□□□□ 0.39
RAPGEF3-216ENST00000547856 NUTM2DQ5VT03 806 aaPredicted RBP17.47■□□□□ 0.39
RAPGEF3-216ENST00000547856 PHF23Q9BUL5 403 aaPredicted RBP17.47■□□□□ 0.39
RAPGEF3-216ENST00000547856 ZC3H13Q5T200 1668 aaKnown RBP17.46■□□□□ 0.39
RAPGEF3-216ENST00000547856 QRICH2Q9H0J4 1663 aa17.46■□□□□ 0.39
RAPGEF3-216ENST00000547856 U2AF1L5P0DN76 240 aaPredicted RBP17.45■□□□□ 0.38
RAPGEF3-216ENST00000547856 U2AF1Q01081 240 aaKnown RBP eCLIP17.45■□□□□ 0.38
RAPGEF3-216ENST00000547856 GDPD2Q9HCC8 539 aa17.45■□□□□ 0.38
RAPGEF3-216ENST00000547856 PIK3C2BO00750 1634 aa17.45■□□□□ 0.38
RAPGEF3-216ENST00000547856 CDC45O75419 566 aa17.45■□□□□ 0.38
RAPGEF3-216ENST00000547856 TAF3Q5VWG9 929 aa17.45■□□□□ 0.38
RAPGEF3-216ENST00000547856 RPGRIP1LQ68CZ1 1315 aa17.45■□□□□ 0.38
RAPGEF3-216ENST00000547856 ARHGAP31Q2M1Z3 1444 aa17.45■□□□□ 0.38
RAPGEF3-216ENST00000547856 YEATS2Q9ULM3 1422 aa17.45■□□□□ 0.38
RAPGEF3-216ENST00000547856 ADCY5O95622 1261 aa17.44■□□□□ 0.38
RAPGEF3-216ENST00000547856 FKBP5Q13451 457 aaPredicted RBP17.44■□□□□ 0.38
RAPGEF3-216ENST00000547856 POLR3AO14802 1390 aaPredicted RBP17.44■□□□□ 0.38
RAPGEF3-216ENST00000547856 IRX5P78411 483 aaPredicted RBP17.44■□□□□ 0.38
RAPGEF3-216ENST00000547856 PAXIP1Q6ZW49 1069 aaPredicted RBP17.44■□□□□ 0.38
RAPGEF3-216ENST00000547856 MTHFSP49914 203 aa17.44■□□□□ 0.38
RAPGEF3-216ENST00000547856 CHMP4AQ9BY43 222 aa17.43■□□□□ 0.38
RAPGEF3-216ENST00000547856 CWC22Q9HCG8 908 aaKnown RBP17.43■□□□□ 0.38
RAPGEF3-216ENST00000547856 CHAF1AQ13111 956 aaPredicted RBP17.42■□□□□ 0.38
RAPGEF3-216ENST00000547856 SLC12A5Q9H2X9 1139 aa17.42■□□□□ 0.38
RAPGEF3-216ENST00000547856 MBD3O95983 291 aa17.42■□□□□ 0.38
RAPGEF3-216ENST00000547856 CYB5RLQ6IPT4 315 aa17.42■□□□□ 0.38
RAPGEF3-216ENST00000547856 NEXMIFQ5QGS0 1516 aa17.41■□□□□ 0.38
RAPGEF3-216ENST00000547856 GSPT1P15170 499 aaKnown RBP17.41■□□□□ 0.38
RAPGEF3-216ENST00000547856 NOL8Q76FK4 1167 aaKnown RBP17.41■□□□□ 0.38
RAPGEF3-216ENST00000547856 IDI1Q13907 227 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms