RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 HDGFL2Q7Z4V5 671 aaPredicted RBP22.03■■□□□ 1.12
CHMP1A-204ENST00000547687 IRX6P78412 446 aaPredicted RBP22.02■■□□□ 1.12
CHMP1A-204ENST00000547687 MON2Q7Z3U7 1717 aa22.01■■□□□ 1.11
CHMP1A-204ENST00000547687 BRWD3Q6RI45 1802 aa22.01■■□□□ 1.11
CHMP1A-204ENST00000547687 NLRP6P59044 892 aa22.01■■□□□ 1.11
CHMP1A-204ENST00000547687 ERICH6BQ5W0A0 696 aa22.01■■□□□ 1.11
CHMP1A-204ENST00000547687 MORC1Q86VD1 984 aa22.01■■□□□ 1.11
CHMP1A-204ENST00000547687 SSH2Q76I76 1423 aa22■■□□□ 1.11
CHMP1A-204ENST00000547687 CPSF1Q10570 1443 aaKnown RBP21.99■■□□□ 1.11
CHMP1A-204ENST00000547687 INSRP06213 1382 aa21.99■■□□□ 1.11
CHMP1A-204ENST00000547687 ZBTB7CA1YPR0 619 aa21.99■■□□□ 1.11
CHMP1A-204ENST00000547687 USP19O94966 1318 aa21.98■■□□□ 1.11
CHMP1A-204ENST00000547687 TTC21BQ7Z4L5 1316 aa21.98■■□□□ 1.11
CHMP1A-204ENST00000547687 VPS72Q15906 364 aa21.98■■□□□ 1.11
CHMP1A-204ENST00000547687 NSD2O96028 1365 aa21.98■■□□□ 1.11
CHMP1A-204ENST00000547687 SOX12O15370 315 aa21.97■■□□□ 1.11
CHMP1A-204ENST00000547687 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.97■■□□□ 1.11
CHMP1A-204ENST00000547687 GCP02774 474 aa21.97■■□□□ 1.11
CHMP1A-204ENST00000547687 TNNT2P45379 298 aaPredicted RBP21.97■■□□□ 1.11
CHMP1A-204ENST00000547687 UPF1Q92900 1129 aaKnown RBP eCLIP21.96■■□□□ 1.112e-9■■■■■ 48.9
CHMP1A-204ENST00000547687 ZNF692Q9BU19 519 aaPredicted RBP21.96■■□□□ 1.11
CHMP1A-204ENST00000547687 ZRANB1Q9UGI0 708 aa21.96■■□□□ 1.11
CHMP1A-204ENST00000547687 FYB1O15117 783 aa21.96■■□□□ 1.11
CHMP1A-204ENST00000547687 STRN4Q9NRL3 753 aa21.96■■□□□ 1.11
CHMP1A-204ENST00000547687 GGNBP2Q9H3C7 697 aa21.95■■□□□ 1.1
CHMP1A-204ENST00000547687 CAMTA1Q9Y6Y1 1673 aa21.93■■□□□ 1.1
CHMP1A-204ENST00000547687 FAM98CQ17RN3 349 aaKnown RBP21.92■■□□□ 1.1
CHMP1A-204ENST00000547687 BLMP54132 1417 aaPredicted RBP21.92■■□□□ 1.1
CHMP1A-204ENST00000547687 SLIT3O75094 1523 aa21.92■■□□□ 1.1
CHMP1A-204ENST00000547687 A0A0G2JS52 829 aa21.92■■□□□ 1.1
CHMP1A-204ENST00000547687 SALL2Q9Y467 1007 aaPredicted RBP21.92■■□□□ 1.1
CHMP1A-204ENST00000547687 RGPD5Q99666 1765 aa21.92■■□□□ 1.1
CHMP1A-204ENST00000547687 KIF20BQ96Q89 1820 aa21.91■■□□□ 1.1
CHMP1A-204ENST00000547687 LMO7Q8WWI1 1683 aa21.91■■□□□ 1.1
CHMP1A-204ENST00000547687 NME9Q86XW9 330 aa21.91■■□□□ 1.1
CHMP1A-204ENST00000547687 SEPT12Q8IYM1 358 aa21.91■■□□□ 1.1
CHMP1A-204ENST00000547687 ANKRD26Q9UPS8 1709 aa21.91■■□□□ 1.1
CHMP1A-204ENST00000547687 PDE3BQ13370 1112 aa21.9■■□□□ 1.1
CHMP1A-204ENST00000547687 USP35Q9P2H5 1018 aa21.9■■□□□ 1.1
CHMP1A-204ENST00000547687 ADAMTS8Q9UP79 889 aa21.9■■□□□ 1.1
CHMP1A-204ENST00000547687 EDC4Q6P2E9 1401 aaKnown RBP21.9■■□□□ 1.1
CHMP1A-204ENST00000547687 TTC21AQ8NDW8 1320 aa21.89■■□□□ 1.09
CHMP1A-204ENST00000547687 CPDO75976 1380 aa21.89■■□□□ 1.09
CHMP1A-204ENST00000547687 WDR43Q15061 677 aaKnown RBP eCLIP21.89■■□□□ 1.09
CHMP1A-204ENST00000547687 PPP4R2Q9NY27 417 aa21.89■■□□□ 1.09
CHMP1A-204ENST00000547687 SPATA31A5Q5VU36 1347 aa21.88■■□□□ 1.09
CHMP1A-204ENST00000547687 RNF123Q5XPI4 1314 aa21.88■■□□□ 1.09
CHMP1A-204ENST00000547687 SPATA31A7Q8IWB4 1347 aa21.88■■□□□ 1.09
CHMP1A-204ENST00000547687 EVA1CP58658 441 aa21.87■■□□□ 1.09
CHMP1A-204ENST00000547687 LARP1Q6PKG0 1096 aaKnown RBP21.87■■□□□ 1.09
CHMP1A-204ENST00000547687 COL18A1P39060 1754 aa21.86■■□□□ 1.09
CHMP1A-204ENST00000547687 MTHFSP49914 203 aa21.86■■□□□ 1.09
CHMP1A-204ENST00000547687 TSHZ2Q9NRE2 1034 aa21.85■■□□□ 1.09
CHMP1A-204ENST00000547687 AXIN2Q9Y2T1 843 aa21.84■■□□□ 1.09
CHMP1A-204ENST00000547687 NFAT5O94916 1531 aa21.84■■□□□ 1.09
CHMP1A-204ENST00000547687 ONECUT3O60422 494 aaPredicted RBP21.84■■□□□ 1.09
CHMP1A-204ENST00000547687 LTN1O94822 1766 aa21.84■■□□□ 1.09
CHMP1A-204ENST00000547687 FAM182BQ5T319 152 aa21.84■■□□□ 1.09
CHMP1A-204ENST00000547687 SPATA31A1Q5TZJ5 1347 aa21.84■■□□□ 1.09
CHMP1A-204ENST00000547687 COL5A2P05997 1499 aaPredicted RBP21.83■■□□□ 1.09
CHMP1A-204ENST00000547687 USP54Q70EL1 1684 aa21.82■■□□□ 1.08
CHMP1A-204ENST00000547687 THSD7AQ9UPZ6 1657 aa21.81■■□□□ 1.08
CHMP1A-204ENST00000547687 ARHGEF25Q86VW2 580 aa21.8■■□□□ 1.08
CHMP1A-204ENST00000547687 KRT27Q7Z3Y8 459 aa21.8■■□□□ 1.08
CHMP1A-204ENST00000547687 KCNH5Q8NCM2 988 aa21.8■■□□□ 1.08
CHMP1A-204ENST00000547687 AATKQ6ZMQ8 1374 aa21.79■■□□□ 1.08
CHMP1A-204ENST00000547687 CDCA7LQ96GN5 454 aa21.79■■□□□ 1.08
CHMP1A-204ENST00000547687 USP31Q70CQ4 1352 aa21.79■■□□□ 1.08
CHMP1A-204ENST00000547687 CFAP53Q96M91 514 aa21.78■■□□□ 1.08
CHMP1A-204ENST00000547687 FBLN1P23142 703 aa21.77■■□□□ 1.08
CHMP1A-204ENST00000547687 SRCAPQ6ZRS2 3230 aa21.77■■□□□ 1.07
CHMP1A-204ENST00000547687 OVOS2A0A0J9YW53 1432 aa21.76■■□□□ 1.07
CHMP1A-204ENST00000547687 OVOS2Q6IE36 1432 aa21.76■■□□□ 1.07
CHMP1A-204ENST00000547687 COG3Q96JB2 828 aa21.76■■□□□ 1.07
CHMP1A-204ENST00000547687 RCAN3Q9UKA8 241 aa21.76■■□□□ 1.07
CHMP1A-204ENST00000547687 MAP2P11137 1827 aaKnown RBP21.75■■□□□ 1.07
CHMP1A-204ENST00000547687 TOM1L2Q6ZVM7 507 aa21.74■■□□□ 1.07
CHMP1A-204ENST00000547687 TCP11L2Q8N4U5 519 aa21.74■■□□□ 1.07
CHMP1A-204ENST00000547687 CRB1P82279 1406 aa21.73■■□□□ 1.07
CHMP1A-204ENST00000547687 B4GALNT3Q6L9W6 998 aa21.73■■□□□ 1.07
CHMP1A-204ENST00000547687 CCDC146Q8IYE0 955 aa21.73■■□□□ 1.07
CHMP1A-204ENST00000547687 POLKQ9UBT6 870 aa21.73■■□□□ 1.07
CHMP1A-204ENST00000547687 CSB-PGBD3P0DP91 1061 aa21.72■■□□□ 1.07
CHMP1A-204ENST00000547687 RRP1P56182 461 aaKnown RBP21.71■■□□□ 1.07
CHMP1A-204ENST00000547687 WDR17Q8IZU2 1322 aa21.71■■□□□ 1.07
CHMP1A-204ENST00000547687 WNK3Q9BYP7 1800 aa21.71■■□□□ 1.07
CHMP1A-204ENST00000547687 COL3A1P02461 1466 aaPredicted RBP21.7■■□□□ 1.06
CHMP1A-204ENST00000547687 BARGINQ6ZT62 677 aa21.7■■□□□ 1.06
CHMP1A-204ENST00000547687 PPM1GO15355 546 aaPredicted RBP21.69■■□□□ 1.06
CHMP1A-204ENST00000547687 DEFB132Q7Z7B7 95 aa21.68■■□□□ 1.06
CHMP1A-204ENST00000547687 EMILIN1Q9Y6C2 1016 aa21.68■■□□□ 1.06
CHMP1A-204ENST00000547687 ZNF521Q96K83 1311 aa21.68■■□□□ 1.06
CHMP1A-204ENST00000547687 PARP4Q9UKK3 1724 aaKnown RBP21.68■■□□□ 1.06
CHMP1A-204ENST00000547687 RRS1Q15050 365 aaKnown RBP21.66■■□□□ 1.06
CHMP1A-204ENST00000547687 LTV1Q96GA3 475 aaPredicted RBP21.66■■□□□ 1.06
CHMP1A-204ENST00000547687 LRRC37A3O60309 1634 aa21.66■■□□□ 1.06
CHMP1A-204ENST00000547687 RGPD2P0DJD1 1756 aa21.65■■□□□ 1.06
CHMP1A-204ENST00000547687 APAF1O14727 1248 aa21.65■■□□□ 1.06
CHMP1A-204ENST00000547687 U2AF1L5P0DN76 240 aaPredicted RBP21.65■■□□□ 1.06
CHMP1A-204ENST00000547687 U2AF1Q01081 240 aaKnown RBP eCLIP21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms