RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 PPP4R3CPQ6ZMV5 832 aa16.51■□□□□ 0.23
YBX3-217ENST00000546164 COL18A1P39060 1754 aa16.51■□□□□ 0.23
YBX3-217ENST00000546164 MYOM1P52179 1685 aa16.5■□□□□ 0.23
YBX3-217ENST00000546164 FAM98CQ17RN3 349 aaKnown RBP16.5■□□□□ 0.23
YBX3-217ENST00000546164 LARP1Q6PKG0 1096 aaKnown RBP16.5■□□□□ 0.23
YBX3-217ENST00000546164 SOX12O15370 315 aa16.49■□□□□ 0.23
YBX3-217ENST00000546164 BARGINQ6ZT62 677 aa16.49■□□□□ 0.23
YBX3-217ENST00000546164 AXIN2Q9Y2T1 843 aa16.49■□□□□ 0.23
YBX3-217ENST00000546164 CRB1P82279 1406 aa16.48■□□□□ 0.23
YBX3-217ENST00000546164 ZBTB7CA1YPR0 619 aa16.48■□□□□ 0.23
YBX3-217ENST00000546164 COG3Q96JB2 828 aa16.48■□□□□ 0.23
YBX3-217ENST00000546164 THRAP3Q9Y2W1 955 aaKnown RBP16.48■□□□□ 0.23
YBX3-217ENST00000546164 THSD7AQ9UPZ6 1657 aa16.48■□□□□ 0.23
YBX3-217ENST00000546164 FYB1O15117 783 aa16.47■□□□□ 0.23
YBX3-217ENST00000546164 TCP11L2Q8N4U5 519 aa16.47■□□□□ 0.23
YBX3-217ENST00000546164 CARD14Q9BXL6 1004 aa16.47■□□□□ 0.23
YBX3-217ENST00000546164 WDR17Q8IZU2 1322 aa16.46■□□□□ 0.23
YBX3-217ENST00000546164 KRT27Q7Z3Y8 459 aa16.46■□□□□ 0.23
YBX3-217ENST00000546164 BRWD3Q6RI45 1802 aa16.45■□□□□ 0.22
YBX3-217ENST00000546164 NSD3Q9BZ95 1437 aa16.45■□□□□ 0.22
YBX3-217ENST00000546164 A0A0G2JS52 829 aa16.44■□□□□ 0.22
YBX3-217ENST00000546164 MYT1Q01538 1121 aa16.44■□□□□ 0.22
YBX3-217ENST00000546164 C11orf95C9JLR9 678 aaPredicted RBP16.43■□□□□ 0.22
YBX3-217ENST00000546164 CCDC125Q86Z20 511 aa16.43■□□□□ 0.22
YBX3-217ENST00000546164 GGNBP2Q9H3C7 697 aa16.43■□□□□ 0.22
YBX3-217ENST00000546164 USP35Q9P2H5 1018 aa16.43■□□□□ 0.22
YBX3-217ENST00000546164 ERBB3P21860 1342 aa16.43■□□□□ 0.22
YBX3-217ENST00000546164 C1QBPQ07021 282 aaKnown RBP16.42■□□□□ 0.22
YBX3-217ENST00000546164 TOM1L2Q6ZVM7 507 aa16.42■□□□□ 0.22
YBX3-217ENST00000546164 CARD10Q9BWT7 1032 aa16.42■□□□□ 0.22
YBX3-217ENST00000546164 BLMP54132 1417 aaPredicted RBP16.42■□□□□ 0.22
YBX3-217ENST00000546164 IP6K1Q92551 441 aa16.41■□□□□ 0.22
YBX3-217ENST00000546164 POLR3GLQ9BT43 218 aa16.41■□□□□ 0.22
YBX3-217ENST00000546164 CGNL1Q0VF96 1302 aa16.41■□□□□ 0.22
YBX3-217ENST00000546164 MAP3K19Q56UN5 1328 aa16.41■□□□□ 0.22
YBX3-217ENST00000546164 LTN1O94822 1766 aa16.4■□□□□ 0.22
YBX3-217ENST00000546164 RTL1A6NKG5 1358 aa16.39■□□□□ 0.21
YBX3-217ENST00000546164 CCDC7Q96M83 1385 aa16.39■□□□□ 0.21
YBX3-217ENST00000546164 CSB-PGBD3P0DP91 1061 aa16.39■□□□□ 0.21
YBX3-217ENST00000546164 CDCA7Q9BWT1 371 aaPredicted RBP16.39■□□□□ 0.21
YBX3-217ENST00000546164 KIF20BQ96Q89 1820 aa16.39■□□□□ 0.21
YBX3-217ENST00000546164 KIF7Q2M1P5 1343 aa16.39■□□□□ 0.21
YBX3-217ENST00000546164 HOXD11P31277 338 aaPredicted RBP16.38■□□□□ 0.21
YBX3-217ENST00000546164 PANK3Q9H999 370 aa16.38■□□□□ 0.21
YBX3-217ENST00000546164 RGPD5Q99666 1765 aa16.38■□□□□ 0.21
YBX3-217ENST00000546164 KIF24Q5T7B8 1368 aa16.38■□□□□ 0.21
YBX3-217ENST00000546164 DISP2A7MBM2 1401 aa16.37■□□□□ 0.21
YBX3-217ENST00000546164 PARP4Q9UKK3 1724 aaKnown RBP16.37■□□□□ 0.21
YBX3-217ENST00000546164 FBLN1P23142 703 aa16.37■□□□□ 0.21
YBX3-217ENST00000546164 HOXC9P31274 260 aa16.37■□□□□ 0.21
YBX3-217ENST00000546164 ANKRD24Q8TF21 1146 aa16.37■□□□□ 0.21
YBX3-217ENST00000546164 AMPHP49418 695 aa16.36■□□□□ 0.21
YBX3-217ENST00000546164 PDE3BQ13370 1112 aa16.36■□□□□ 0.21
YBX3-217ENST00000546164 RRS1Q15050 365 aaKnown RBP16.35■□□□□ 0.21
YBX3-217ENST00000546164 NSD2O96028 1365 aa16.35■□□□□ 0.21
YBX3-217ENST00000546164 FAM196AQ6ZSG2 479 aa16.34■□□□□ 0.21
YBX3-217ENST00000546164 NLRP2Q9NX02 1062 aa16.34■□□□□ 0.21
YBX3-217ENST00000546164 DDB1Q16531 1140 aa16.33■□□□□ 0.2
YBX3-217ENST00000546164 FAM182BQ5T319 152 aa16.33■□□□□ 0.2
YBX3-217ENST00000546164 LRRC37A3O60309 1634 aa16.33■□□□□ 0.2
YBX3-217ENST00000546164 WNK3Q9BYP7 1800 aa16.33■□□□□ 0.2
YBX3-217ENST00000546164 INSRP06213 1382 aa16.32■□□□□ 0.2
YBX3-217ENST00000546164 FLT4P35916 1363 aa16.32■□□□□ 0.2
YBX3-217ENST00000546164 FAM208AQ9UK61 1670 aaKnown RBP16.31■□□□□ 0.2
YBX3-217ENST00000546164 SF3B2Q13435 895 aaKnown RBP16.31■□□□□ 0.2
YBX3-217ENST00000546164 BCL9O00512 1426 aa16.3■□□□□ 0.2
YBX3-217ENST00000546164 WASHC2AQ641Q2 1341 aa16.3■□□□□ 0.2
YBX3-217ENST00000546164 IL2RBP14784 551 aa16.3■□□□□ 0.2
YBX3-217ENST00000546164 KNSTRNQ9Y448 316 aa16.3■□□□□ 0.2
YBX3-217ENST00000546164 OVOS2A0A0G2JMS6 1433 aa16.29■□□□□ 0.2
YBX3-217ENST00000546164 TNS2Q63HR2 1409 aa16.29■□□□□ 0.2
YBX3-217ENST00000546164 PEAK1Q9H792 1746 aa16.29■□□□□ 0.2
YBX3-217ENST00000546164 ANKRD26Q9UPS8 1709 aa16.29■□□□□ 0.2
YBX3-217ENST00000546164 HSP90AB2PQ58FF8 381 aa16.29■□□□□ 0.2
YBX3-217ENST00000546164 LTV1Q96GA3 475 aaPredicted RBP16.29■□□□□ 0.2
YBX3-217ENST00000546164 EMILIN1Q9Y6C2 1016 aa16.29■□□□□ 0.2
YBX3-217ENST00000546164 SMG6Q86US8 1419 aaKnown RBP16.28■□□□□ 0.2
YBX3-217ENST00000546164 EXOC5O00471 708 aa16.28■□□□□ 0.2
YBX3-217ENST00000546164 AMER1Q5JTC6 1135 aaPredicted RBP16.28■□□□□ 0.2
YBX3-217ENST00000546164 POLKQ9UBT6 870 aa16.28■□□□□ 0.2
YBX3-217ENST00000546164 RGPD1P0DJD0 1748 aa16.28■□□□□ 0.2
YBX3-217ENST00000546164 PER1O15534 1290 aaPredicted RBP16.27■□□□□ 0.2
YBX3-217ENST00000546164 BAG6P46379 1132 aa16.27■□□□□ 0.2
YBX3-217ENST00000546164 DEFB132Q7Z7B7 95 aa16.27■□□□□ 0.2
YBX3-217ENST00000546164 MARCH10Q8NA82 808 aaPredicted RBP16.27■□□□□ 0.2
YBX3-217ENST00000546164 TRIM37O94972 964 aa16.26■□□□□ 0.19
YBX3-217ENST00000546164 NBPF6Q5VWK0 638 aa16.26■□□□□ 0.19
YBX3-217ENST00000546164 NBPF4Q96M43 638 aa16.26■□□□□ 0.19
YBX3-217ENST00000546164 TNS1Q9HBL0 1735 aaKnown RBP16.25■□□□□ 0.19
YBX3-217ENST00000546164 MORC1Q86VD1 984 aa16.24■□□□□ 0.19
YBX3-217ENST00000546164 NPC1L1Q9UHC9 1359 aa16.24■□□□□ 0.19
YBX3-217ENST00000546164 NCAPD2Q15021 1401 aa16.23■□□□□ 0.19
YBX3-217ENST00000546164 MAP2P11137 1827 aaKnown RBP16.22■□□□□ 0.19
YBX3-217ENST00000546164 PPM1GO15355 546 aaPredicted RBP16.22■□□□□ 0.19
YBX3-217ENST00000546164 TNNT2P45379 298 aaPredicted RBP16.22■□□□□ 0.19
YBX3-217ENST00000546164 PARD3Q8TEW0 1356 aa16.22■□□□□ 0.19
YBX3-217ENST00000546164 MEGF6O75095 1541 aa16.21■□□□□ 0.19
YBX3-217ENST00000546164 EN1Q05925 392 aaPredicted RBP16.21■□□□□ 0.19
YBX3-217ENST00000546164 BCL11BQ9C0K0 894 aaPredicted RBP16.21■□□□□ 0.19
YBX3-217ENST00000546164 APBA3O96018 575 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms