RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 QRICH2Q9H0J4 1663 aa12.11□□□□□ -0.47
USP28-215ENST00000545608 PDE3BQ13370 1112 aa12.11□□□□□ -0.47
USP28-215ENST00000545608 CAMKK2Q96RR4 588 aa12.1□□□□□ -0.47
USP28-215ENST00000545608 ZNF692Q9BU19 519 aaPredicted RBP12.1□□□□□ -0.47
USP28-215ENST00000545608 THRAP3Q9Y2W1 955 aaKnown RBP12.1□□□□□ -0.47
USP28-215ENST00000545608 DISP2A7MBM2 1401 aa12.1□□□□□ -0.47
USP28-215ENST00000545608 TTC21BQ7Z4L5 1316 aa12.1□□□□□ -0.47
USP28-215ENST00000545608 LMO7Q8WWI1 1683 aa12.1□□□□□ -0.47
USP28-215ENST00000545608 COL5A2P05997 1499 aaPredicted RBP12.09□□□□□ -0.47
USP28-215ENST00000545608 TRPM1Q7Z4N2 1603 aa12.09□□□□□ -0.47
USP28-215ENST00000545608 APBA3O96018 575 aa12.09□□□□□ -0.47
USP28-215ENST00000545608 R3HDM1Q15032 1099 aaKnown RBP12.09□□□□□ -0.47
USP28-215ENST00000545608 AATKQ6ZMQ8 1374 aa12.08□□□□□ -0.48
USP28-215ENST00000545608 AXIN2Q9Y2T1 843 aa12.08□□□□□ -0.48
USP28-215ENST00000545608 SLIT3O75094 1523 aa12.07□□□□□ -0.48
USP28-215ENST00000545608 ARHGEF25Q86VW2 580 aa12.07□□□□□ -0.48
USP28-215ENST00000545608 RGPD1P0DJD0 1748 aa12.06□□□□□ -0.48
USP28-215ENST00000545608 CRB1P82279 1406 aa12.06□□□□□ -0.48
USP28-215ENST00000545608 CPSF1Q10570 1443 aaKnown RBP12.06□□□□□ -0.48
USP28-215ENST00000545608 SOX12O15370 315 aa12.06□□□□□ -0.48
USP28-215ENST00000545608 TOM1L2Q6ZVM7 507 aa12.06□□□□□ -0.48
USP28-215ENST00000545608 CARD11Q9BXL7 1154 aa12.06□□□□□ -0.48
USP28-215ENST00000545608 ABCB7O75027 752 aa12.05□□□□□ -0.48
USP28-215ENST00000545608 KCNH5Q8NCM2 988 aa12.05□□□□□ -0.48
USP28-215ENST00000545608 TNS1Q9HBL0 1735 aaKnown RBP12.05□□□□□ -0.48
USP28-215ENST00000545608 TTC21AQ8NDW8 1320 aa12.05□□□□□ -0.48
USP28-215ENST00000545608 KTN1Q86UP2 1357 aaKnown RBP12.05□□□□□ -0.48
USP28-215ENST00000545608 PIK3C2AO00443 1686 aa12.04□□□□□ -0.48
USP28-215ENST00000545608 WDR17Q8IZU2 1322 aa12.04□□□□□ -0.48
USP28-215ENST00000545608 DDB1Q16531 1140 aa12.03□□□□□ -0.48
USP28-215ENST00000545608 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.03□□□□□ -0.48
USP28-215ENST00000545608 PARD3Q8TEW0 1356 aa12.03□□□□□ -0.48
USP28-215ENST00000545608 SBNO2Q9Y2G9 1366 aa12.03□□□□□ -0.48
USP28-215ENST00000545608 SRCAPQ6ZRS2 3230 aa12.02□□□□□ -0.48
USP28-215ENST00000545608 CSB-PGBD3P0DP91 1061 aa12.02□□□□□ -0.49
USP28-215ENST00000545608 TMC1Q8TDI8 760 aa12.02□□□□□ -0.49
USP28-215ENST00000545608 SLC12A5Q9H2X9 1139 aa12.02□□□□□ -0.49
USP28-215ENST00000545608 COL18A1P39060 1754 aa12.02□□□□□ -0.49
USP28-215ENST00000545608 LRP5O75197 1615 aa12.01□□□□□ -0.49
USP28-215ENST00000545608 C11orf95C9JLR9 678 aaPredicted RBP12.01□□□□□ -0.49
USP28-215ENST00000545608 PTF1AQ7RTS3 328 aa12.01□□□□□ -0.49
USP28-215ENST00000545608 NME9Q86XW9 330 aa12.01□□□□□ -0.49
USP28-215ENST00000545608 MARCH10Q8NA82 808 aaPredicted RBP12.01□□□□□ -0.49
USP28-215ENST00000545608 CARD10Q9BWT7 1032 aa12.01□□□□□ -0.49
USP28-215ENST00000545608 TONSLQ96HA7 1378 aa12.01□□□□□ -0.49
USP28-215ENST00000545608 NBPF14Q5TI25 921 aa12□□□□□ -0.49
USP28-215ENST00000545608 CDCA7Q9BWT1 371 aaPredicted RBP12□□□□□ -0.49
USP28-215ENST00000545608 USP31Q70CQ4 1352 aa12□□□□□ -0.49
USP28-215ENST00000545608 OVOS2A0A0G2JMS6 1433 aa12□□□□□ -0.49
USP28-215ENST00000545608 OVOS2A0A0J9YW53 1432 aa12□□□□□ -0.49
USP28-215ENST00000545608 OVOS2Q6IE36 1432 aa12□□□□□ -0.49
USP28-215ENST00000545608 CD163L1Q9NR16 1453 aa12□□□□□ -0.49
USP28-215ENST00000545608 PARP4Q9UKK3 1724 aaKnown RBP12□□□□□ -0.49
USP28-215ENST00000545608 HDGFL2Q7Z4V5 671 aaPredicted RBP11.99□□□□□ -0.49
USP28-215ENST00000545608 AKAP12Q02952 1782 aa11.99□□□□□ -0.49
USP28-215ENST00000545608 NFAT5O94916 1531 aa11.98□□□□□ -0.49
USP28-215ENST00000545608 PLSCR1O15162 318 aa11.98□□□□□ -0.49
USP28-215ENST00000545608 BCL11BQ9C0K0 894 aaPredicted RBP11.98□□□□□ -0.49
USP28-215ENST00000545608 EXOC5O00471 708 aa11.97□□□□□ -0.49
USP28-215ENST00000545608 IFNLR1Q8IU57 520 aaPredicted RBP11.97□□□□□ -0.49
USP28-215ENST00000545608 PUS7Q96PZ0 661 aaKnown RBP11.97□□□□□ -0.49
USP28-215ENST00000545608 TESK2Q96S53 571 aa11.97□□□□□ -0.49
USP28-215ENST00000545608 PEAK1Q9H792 1746 aa11.97□□□□□ -0.49
USP28-215ENST00000545608 LRRC37A3O60309 1634 aa11.97□□□□□ -0.49
USP28-215ENST00000545608 CCDC7Q96M83 1385 aa11.96□□□□□ -0.49
USP28-215ENST00000545608 ST20-MTHFSA0A0A6YYL1 179 aa11.96□□□□□ -0.49
USP28-215ENST00000545608 POTEDQ86YR6 584 aa11.96□□□□□ -0.49
USP28-215ENST00000545608 TERF2IPQ9NYB0 399 aa11.96□□□□□ -0.49
USP28-215ENST00000545608 A0A1W2PP64 1363 aa11.95□□□□□ -0.5
USP28-215ENST00000545608 ERBB3P21860 1342 aa11.95□□□□□ -0.5
USP28-215ENST00000545608 RREB1Q92766 1687 aa11.95□□□□□ -0.5
USP28-215ENST00000545608 NLRP2Q9NX02 1062 aa11.95□□□□□ -0.5
USP28-215ENST00000545608 BCL9O00512 1426 aa11.94□□□□□ -0.5
USP28-215ENST00000545608 EDC4Q6P2E9 1401 aaKnown RBP11.94□□□□□ -0.5
USP28-215ENST00000545608 NUP188Q5SRE5 1749 aa11.94□□□□□ -0.5
USP28-215ENST00000545608 MON2Q7Z3U7 1717 aa11.94□□□□□ -0.5
USP28-215ENST00000545608 ANKRD24Q8TF21 1146 aa11.94□□□□□ -0.5
USP28-215ENST00000545608 ANO8Q9HCE9 1232 aaPredicted RBP11.94□□□□□ -0.5
USP28-215ENST00000545608 RGPD5Q99666 1765 aa11.94□□□□□ -0.5
USP28-215ENST00000545608 KCNQ2O43526 872 aa11.93□□□□□ -0.5
USP28-215ENST00000545608 TRIM26Q12899 539 aaPredicted RBP11.93□□□□□ -0.5
USP28-215ENST00000545608 ABCC6O95255 1503 aa11.92□□□□□ -0.5
USP28-215ENST00000545608 IL2RBP14784 551 aa11.92□□□□□ -0.5
USP28-215ENST00000545608 FBLN1P23142 703 aa11.92□□□□□ -0.5
USP28-215ENST00000545608 TXNRD1Q16881 649 aa11.92□□□□□ -0.5
USP28-215ENST00000545608 ACSBG1Q96GR2 724 aa11.92□□□□□ -0.5
USP28-215ENST00000545608 SPON1Q9HCB6 807 aa11.92□□□□□ -0.5
USP28-215ENST00000545608 IP6K1Q92551 441 aa11.91□□□□□ -0.5
USP28-215ENST00000545608 PDGFDQ9GZP0 370 aaPredicted RBP11.91□□□□□ -0.5
USP28-215ENST00000545608 TNS2Q63HR2 1409 aa11.91□□□□□ -0.5
USP28-215ENST00000545608 SBF2Q86WG5 1849 aa11.9□□□□□ -0.5
USP28-215ENST00000545608 LTV1Q96GA3 475 aaPredicted RBP11.9□□□□□ -0.5
USP28-215ENST00000545608 WNK3Q9BYP7 1800 aa11.9□□□□□ -0.5
USP28-215ENST00000545608 USP54Q70EL1 1684 aa11.9□□□□□ -0.5
USP28-215ENST00000545608 DSG3P32926 999 aa11.89□□□□□ -0.51
USP28-215ENST00000545608 COG3Q96JB2 828 aa11.89□□□□□ -0.51
USP28-215ENST00000545608 NINLQ9Y2I6 1382 aa11.89□□□□□ -0.51
USP28-215ENST00000545608 MAP3K19Q56UN5 1328 aa11.88□□□□□ -0.51
USP28-215ENST00000545608 STK32BQ9NY57 414 aa11.88□□□□□ -0.51
USP28-215ENST00000545608 PPP1R1BQ9UD71 204 aaPredicted RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms