RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 CAMTA1Q9Y6Y1 1673 aa12.77□□□□□ -0.37
SNHG1-215ENST00000540904 FYB1O15117 783 aa12.76□□□□□ -0.37
SNHG1-215ENST00000540904 LARP1Q6PKG0 1096 aaKnown RBP12.76□□□□□ -0.37
SNHG1-215ENST00000540904 SEPT12Q8IYM1 358 aa12.76□□□□□ -0.37
SNHG1-215ENST00000540904 GGNBP2Q9H3C7 697 aa12.76□□□□□ -0.37
SNHG1-215ENST00000540904 AXIN2Q9Y2T1 843 aa12.76□□□□□ -0.37
SNHG1-215ENST00000540904 OVOS2A0A0J9YW53 1432 aa12.76□□□□□ -0.37
SNHG1-215ENST00000540904 OVOS2Q6IE36 1432 aa12.76□□□□□ -0.37
SNHG1-215ENST00000540904 NSD3Q9BZ95 1437 aa12.76□□□□□ -0.37
SNHG1-215ENST00000540904 NRAPQ86VF7 1730 aa12.76□□□□□ -0.37
SNHG1-215ENST00000540904 NFAT5O94916 1531 aa12.75□□□□□ -0.37
SNHG1-215ENST00000540904 MYOM1P52179 1685 aa12.74□□□□□ -0.37
SNHG1-215ENST00000540904 LMO7Q8WWI1 1683 aa12.74□□□□□ -0.37
SNHG1-215ENST00000540904 COL5A2P05997 1499 aaPredicted RBP12.74□□□□□ -0.37
SNHG1-215ENST00000540904 KIF7Q2M1P5 1343 aa12.74□□□□□ -0.37
SNHG1-215ENST00000540904 SPATA31A1Q5TZJ5 1347 aa12.74□□□□□ -0.37
SNHG1-215ENST00000540904 ONECUT3O60422 494 aaPredicted RBP12.74□□□□□ -0.37
SNHG1-215ENST00000540904 C1QBPQ07021 282 aaKnown RBP12.74□□□□□ -0.37
SNHG1-215ENST00000540904 PANK3Q9H999 370 aa12.74□□□□□ -0.37
SNHG1-215ENST00000540904 FBLN1P23142 703 aa12.73□□□□□ -0.37
SNHG1-215ENST00000540904 CGNL1Q0VF96 1302 aa12.72□□□□□ -0.37
SNHG1-215ENST00000540904 CSB-PGBD3P0DP91 1061 aa12.72□□□□□ -0.37
SNHG1-215ENST00000540904 TOM1L2Q6ZVM7 507 aa12.72□□□□□ -0.37
SNHG1-215ENST00000540904 USP54Q70EL1 1684 aa12.71□□□□□ -0.37
SNHG1-215ENST00000540904 TCP11L2Q8N4U5 519 aa12.71□□□□□ -0.37
SNHG1-215ENST00000540904 CRB1P82279 1406 aa12.71□□□□□ -0.38
SNHG1-215ENST00000540904 MAP3K19Q56UN5 1328 aa12.7□□□□□ -0.38
SNHG1-215ENST00000540904 WDR17Q8IZU2 1322 aa12.7□□□□□ -0.38
SNHG1-215ENST00000540904 RRS1Q15050 365 aaKnown RBP12.7□□□□□ -0.38
SNHG1-215ENST00000540904 KRT27Q7Z3Y8 459 aa12.7□□□□□ -0.38
SNHG1-215ENST00000540904 UPF1Q92900 1129 aaKnown RBP eCLIP12.7□□□□□ -0.38
SNHG1-215ENST00000540904 AMPHP49418 695 aa12.69□□□□□ -0.38
SNHG1-215ENST00000540904 BARGINQ6ZT62 677 aa12.69□□□□□ -0.38
SNHG1-215ENST00000540904 IP6K1Q92551 441 aa12.69□□□□□ -0.38
SNHG1-215ENST00000540904 THRAP3Q9Y2W1 955 aaKnown RBP12.69□□□□□ -0.38
SNHG1-215ENST00000540904 COL18A1P39060 1754 aa12.69□□□□□ -0.38
SNHG1-215ENST00000540904 ANKRD24Q8TF21 1146 aa12.68□□□□□ -0.38
SNHG1-215ENST00000540904 CARD10Q9BWT7 1032 aa12.68□□□□□ -0.38
SNHG1-215ENST00000540904 CCDC7Q96M83 1385 aa12.68□□□□□ -0.38
SNHG1-215ENST00000540904 ABCC6O95255 1503 aa12.67□□□□□ -0.38
SNHG1-215ENST00000540904 ERBB3P21860 1342 aa12.67□□□□□ -0.38
SNHG1-215ENST00000540904 WASHC2AQ641Q2 1341 aa12.67□□□□□ -0.38
SNHG1-215ENST00000540904 HOXC9P31274 260 aa12.67□□□□□ -0.38
SNHG1-215ENST00000540904 LTV1Q96GA3 475 aaPredicted RBP12.67□□□□□ -0.38
SNHG1-215ENST00000540904 NLRP2Q9NX02 1062 aa12.67□□□□□ -0.38
SNHG1-215ENST00000540904 KNSTRNQ9Y448 316 aa12.67□□□□□ -0.38
SNHG1-215ENST00000540904 BLMP54132 1417 aaPredicted RBP12.66□□□□□ -0.38
SNHG1-215ENST00000540904 TNNT2P45379 298 aaPredicted RBP12.66□□□□□ -0.38
SNHG1-215ENST00000540904 FAM182BQ5T319 152 aa12.66□□□□□ -0.38
SNHG1-215ENST00000540904 PPM1GO15355 546 aaPredicted RBP12.65□□□□□ -0.38
SNHG1-215ENST00000540904 PDE3BQ13370 1112 aa12.65□□□□□ -0.38
SNHG1-215ENST00000540904 KIF20BQ96Q89 1820 aa12.65□□□□□ -0.39
SNHG1-215ENST00000540904 THSD7AQ9UPZ6 1657 aa12.64□□□□□ -0.39
SNHG1-215ENST00000540904 LTN1O94822 1766 aa12.64□□□□□ -0.39
SNHG1-215ENST00000540904 EMILIN1Q9Y6C2 1016 aa12.64□□□□□ -0.39
SNHG1-215ENST00000540904 RTL1A6NKG5 1358 aa12.64□□□□□ -0.39
SNHG1-215ENST00000540904 MORC1Q86VD1 984 aa12.63□□□□□ -0.39
SNHG1-215ENST00000540904 NSD2O96028 1365 aa12.63□□□□□ -0.39
SNHG1-215ENST00000540904 RGPD5Q99666 1765 aa12.63□□□□□ -0.39
SNHG1-215ENST00000540904 BRWD3Q6RI45 1802 aa12.62□□□□□ -0.39
SNHG1-215ENST00000540904 FLT4P35916 1363 aa12.62□□□□□ -0.39
SNHG1-215ENST00000540904 DDB1Q16531 1140 aa12.62□□□□□ -0.39
SNHG1-215ENST00000540904 HSP90AB2PQ58FF8 381 aa12.62□□□□□ -0.39
SNHG1-215ENST00000540904 AMER1Q5JTC6 1135 aaPredicted RBP12.62□□□□□ -0.39
SNHG1-215ENST00000540904 CDCA7Q9BWT1 371 aaPredicted RBP12.62□□□□□ -0.39
SNHG1-215ENST00000540904 PER1O15534 1290 aaPredicted RBP12.61□□□□□ -0.39
SNHG1-215ENST00000540904 CCDC125Q86Z20 511 aa12.61□□□□□ -0.39
SNHG1-215ENST00000540904 POLKQ9UBT6 870 aa12.61□□□□□ -0.39
SNHG1-215ENST00000540904 INSRP06213 1382 aa12.6□□□□□ -0.39
SNHG1-215ENST00000540904 KIF24Q5T7B8 1368 aa12.6□□□□□ -0.39
SNHG1-215ENST00000540904 IL2RBP14784 551 aa12.6□□□□□ -0.39
SNHG1-215ENST00000540904 SF3B2Q13435 895 aaKnown RBP12.6□□□□□ -0.39
SNHG1-215ENST00000540904 CNGB1Q14028 1251 aaPredicted RBP12.6□□□□□ -0.39
SNHG1-215ENST00000540904 FAM196AQ6ZSG2 479 aa12.6□□□□□ -0.39
SNHG1-215ENST00000540904 SMG6Q86US8 1419 aaKnown RBP12.6□□□□□ -0.39
SNHG1-215ENST00000540904 EXOC5O00471 708 aa12.59□□□□□ -0.39
SNHG1-215ENST00000540904 ZEB1P37275 1124 aaPredicted RBP12.59□□□□□ -0.39
SNHG1-215ENST00000540904 CC2D1BQ5T0F9 858 aaKnown RBP12.59□□□□□ -0.39
SNHG1-215ENST00000540904 DISP2A7MBM2 1401 aa12.59□□□□□ -0.39
SNHG1-215ENST00000540904 NCBP3Q53F19 620 aaKnown RBP12.58□□□□□ -0.4
SNHG1-215ENST00000540904 NBPF6Q5VWK0 638 aa12.58□□□□□ -0.4
SNHG1-215ENST00000540904 USHBP1Q8N6Y0 703 aa12.58□□□□□ -0.4
SNHG1-215ENST00000540904 NBPF4Q96M43 638 aa12.58□□□□□ -0.4
SNHG1-215ENST00000540904 PEAK1Q9H792 1746 aa12.58□□□□□ -0.4
SNHG1-215ENST00000540904 EP400Q96L91 3159 aa12.57□□□□□ -0.4
SNHG1-215ENST00000540904 TRIM37O94972 964 aa12.57□□□□□ -0.4
SNHG1-215ENST00000540904 MARCH10Q8NA82 808 aaPredicted RBP12.57□□□□□ -0.4
SNHG1-215ENST00000540904 PARP4Q9UKK3 1724 aaKnown RBP12.57□□□□□ -0.4
SNHG1-215ENST00000540904 LRRC37A3O60309 1634 aa12.56□□□□□ -0.4
SNHG1-215ENST00000540904 DEFB132Q7Z7B7 95 aa12.56□□□□□ -0.4
SNHG1-215ENST00000540904 OVOS2A0A0G2JMS6 1433 aa12.55□□□□□ -0.4
SNHG1-215ENST00000540904 TNS2Q63HR2 1409 aa12.55□□□□□ -0.4
SNHG1-215ENST00000540904 ANKRD26Q9UPS8 1709 aa12.55□□□□□ -0.4
SNHG1-215ENST00000540904 BAG6P46379 1132 aa12.54□□□□□ -0.4
SNHG1-215ENST00000540904 EIF4A2Q14240 407 aaKnown RBP12.54□□□□□ -0.4
SNHG1-215ENST00000540904 DDX54Q8TDD1 881 aaKnown RBP12.54□□□□□ -0.4
SNHG1-215ENST00000540904 RAPGEF4Q8WZA2 1011 aa12.54□□□□□ -0.4
SNHG1-215ENST00000540904 NPC1L1Q9UHC9 1359 aa12.54□□□□□ -0.4
SNHG1-215ENST00000540904 EYA1Q99502 592 aa12.53□□□□□ -0.4
SNHG1-215ENST00000540904 FAM208AQ9UK61 1670 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms