RNA–Protein interactions for RNA: ENST00000540784.5

DDB1-218, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 3

Gene DDB1, Length 1,119 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-218ENST00000540784 NPC1L1Q9UHC9 1359 aa21.09■□□□□ 0.97
DDB1-218ENST00000540784 VPS72Q15906 364 aa21.08■□□□□ 0.97
DDB1-218ENST00000540784 PPM1GO15355 546 aaPredicted RBP21.07■□□□□ 0.96
DDB1-218ENST00000540784 RXRBP28702 533 aa21.07■□□□□ 0.96
DDB1-218ENST00000540784 GJD4Q96KN9 370 aaPredicted RBP21.06■□□□□ 0.96
DDB1-218ENST00000540784 POLKQ9UBT6 870 aa21.06■□□□□ 0.96
DDB1-218ENST00000540784 CAMTA1Q9Y6Y1 1673 aa21.05■□□□□ 0.96
DDB1-218ENST00000540784 HOXC9P31274 260 aa21.05■□□□□ 0.96
DDB1-218ENST00000540784 RBM6P78332 1123 aaKnown RBP21.05■□□□□ 0.96
DDB1-218ENST00000540784 CSB-PGBD3P0DP91 1061 aa21.04■□□□□ 0.96
DDB1-218ENST00000540784 LARP1Q6PKG0 1096 aaKnown RBP21.04■□□□□ 0.96
DDB1-218ENST00000540784 EMILIN1Q9Y6C2 1016 aa21.04■□□□□ 0.96
DDB1-218ENST00000540784 ATRNO75882 1429 aa21.03■□□□□ 0.96
DDB1-218ENST00000540784 TOM1L2Q6ZVM7 507 aa21.02■□□□□ 0.96
DDB1-218ENST00000540784 ANKRD24Q8TF21 1146 aa21.02■□□□□ 0.96
DDB1-218ENST00000540784 LTV1Q96GA3 475 aaPredicted RBP21.02■□□□□ 0.96
DDB1-218ENST00000540784 NWD2Q9ULI1 1742 aa21.01■□□□□ 0.95
DDB1-218ENST00000540784 KIF24Q5T7B8 1368 aa21.01■□□□□ 0.95
DDB1-218ENST00000540784 HSP90AB2PQ58FF8 381 aa21.01■□□□□ 0.95
DDB1-218ENST00000540784 PLCH1Q4KWH8 1693 aa21.01■□□□□ 0.95
DDB1-218ENST00000540784 SPATA31A5Q5VU36 1347 aa21.01■□□□□ 0.95
DDB1-218ENST00000540784 SPATA31A7Q8IWB4 1347 aa21.01■□□□□ 0.95
DDB1-218ENST00000540784 USP35Q9P2H5 1018 aa21■□□□□ 0.95
DDB1-218ENST00000540784 WDR17Q8IZU2 1322 aa21■□□□□ 0.95
DDB1-218ENST00000540784 COL5A2P05997 1499 aaPredicted RBP21■□□□□ 0.95
DDB1-218ENST00000540784 COL18A1P39060 1754 aa21■□□□□ 0.95
DDB1-218ENST00000540784 RTL1A6NKG5 1358 aa20.99■□□□□ 0.95
DDB1-218ENST00000540784 BLMP54132 1417 aaPredicted RBP20.99■□□□□ 0.95
DDB1-218ENST00000540784 LMO7Q8WWI1 1683 aa20.99■□□□□ 0.95
DDB1-218ENST00000540784 FLT4P35916 1363 aa20.98■□□□□ 0.95
DDB1-218ENST00000540784 ANKRD26Q9UPS8 1709 aa20.98■□□□□ 0.95
DDB1-218ENST00000540784 MTHFSP49914 203 aa20.98■□□□□ 0.95
DDB1-218ENST00000540784 NLRP2Q9NX02 1062 aa20.98■□□□□ 0.95
DDB1-218ENST00000540784 SPATA31A1Q5TZJ5 1347 aa20.98■□□□□ 0.95
DDB1-218ENST00000540784 CARD10Q9BWT7 1032 aa20.97■□□□□ 0.95
DDB1-218ENST00000540784 ABCC6O95255 1503 aa20.97■□□□□ 0.95
DDB1-218ENST00000540784 ERBB3P21860 1342 aa20.97■□□□□ 0.95
DDB1-218ENST00000540784 LTN1O94822 1766 aa20.97■□□□□ 0.95
DDB1-218ENST00000540784 INSRP06213 1382 aa20.97■□□□□ 0.95
DDB1-218ENST00000540784 TCP11L2Q8N4U5 519 aa20.96■□□□□ 0.95
DDB1-218ENST00000540784 CRB1P82279 1406 aa20.95■□□□□ 0.95
DDB1-218ENST00000540784 THRAP3Q9Y2W1 955 aaKnown RBP20.95■□□□□ 0.94
DDB1-218ENST00000540784 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.95■□□□□ 0.94
DDB1-218ENST00000540784 ONECUT3O60422 494 aaPredicted RBP20.94■□□□□ 0.94
DDB1-218ENST00000540784 PPP2R1AP30153 589 aa20.94■□□□□ 0.94
DDB1-218ENST00000540784 RALBP1Q15311 655 aa20.94■□□□□ 0.94
DDB1-218ENST00000540784 FAM98CQ17RN3 349 aaKnown RBP20.94■□□□□ 0.94
DDB1-218ENST00000540784 NRAPQ86VF7 1730 aa20.94■□□□□ 0.94
DDB1-218ENST00000540784 MAP2P11137 1827 aaKnown RBP20.93■□□□□ 0.94
DDB1-218ENST00000540784 BARGINQ6ZT62 677 aa20.92■□□□□ 0.94
DDB1-218ENST00000540784 SMG6Q86US8 1419 aaKnown RBP20.92■□□□□ 0.94
DDB1-218ENST00000540784 RGPD5Q99666 1765 aa20.92■□□□□ 0.94
DDB1-218ENST00000540784 A0A0G2JS52 829 aa20.91■□□□□ 0.94
DDB1-218ENST00000540784 MYT1Q01538 1121 aa20.91■□□□□ 0.94
DDB1-218ENST00000540784 EIF4A2Q14240 407 aaKnown RBP20.9■□□□□ 0.94
DDB1-218ENST00000540784 NBPF6Q5VWK0 638 aa20.9■□□□□ 0.94
DDB1-218ENST00000540784 SEPT12Q8IYM1 358 aa20.9■□□□□ 0.94
DDB1-218ENST00000540784 NBPF4Q96M43 638 aa20.9■□□□□ 0.94
DDB1-218ENST00000540784 PARD3Q8TEW0 1356 aa20.89■□□□□ 0.93
DDB1-218ENST00000540784 ILDR2Q71H61 639 aa20.89■□□□□ 0.93
DDB1-218ENST00000540784 PEAK1Q9H792 1746 aa20.89■□□□□ 0.93
DDB1-218ENST00000540784 CFAP53Q96M91 514 aa20.88■□□□□ 0.93
DDB1-218ENST00000540784 CDCA7Q9BWT1 371 aaPredicted RBP20.88■□□□□ 0.93
DDB1-218ENST00000540784 GLI3P10071 1580 aa20.88■□□□□ 0.93
DDB1-218ENST00000540784 DIAPH1O60610 1272 aaKnown RBP20.86■□□□□ 0.93
DDB1-218ENST00000540784 EYA1Q99502 592 aa20.86■□□□□ 0.93
DDB1-218ENST00000540784 PRKRIP1Q9H875 184 aaPredicted RBP20.86■□□□□ 0.93
DDB1-218ENST00000540784 CDK12Q9NYV4 1490 aaPredicted RBP20.86■□□□□ 0.93
DDB1-218ENST00000540784 IL13P35225 146 aa20.85■□□□□ 0.93
DDB1-218ENST00000540784 USHBP1Q8N6Y0 703 aa20.85■□□□□ 0.93
DDB1-218ENST00000540784 IL2RBP14784 551 aa20.84■□□□□ 0.93
DDB1-218ENST00000540784 EXOC5O00471 708 aa20.83■□□□□ 0.93
DDB1-218ENST00000540784 ANP32CO43423 234 aa20.83■□□□□ 0.93
DDB1-218ENST00000540784 MYBBP1AQ9BQG0 1328 aaKnown RBP20.82■□□□□ 0.92
DDB1-218ENST00000540784 RGS12O14924 1447 aa20.82■□□□□ 0.92
DDB1-218ENST00000540784 PDE3BQ13370 1112 aa20.82■□□□□ 0.92
DDB1-218ENST00000540784 RAPGEF4Q8WZA2 1011 aa20.82■□□□□ 0.92
DDB1-218ENST00000540784 DDB1Q16531 1140 aa20.81■□□□□ 0.92
DDB1-218ENST00000540784 KRT27Q7Z3Y8 459 aa20.81■□□□□ 0.92
DDB1-218ENST00000540784 TATP17735 454 aaPredicted RBP20.8■□□□□ 0.92
DDB1-218ENST00000540784 NUDCQ9Y266 331 aa20.8■□□□□ 0.92
DDB1-218ENST00000540784 IGSF1Q8N6C5 1336 aa20.78■□□□□ 0.92
DDB1-218ENST00000540784 U2SURPO15042 1029 aaKnown RBP20.78■□□□□ 0.92
DDB1-218ENST00000540784 SULT6B1Q6IMI4 303 aa20.78■□□□□ 0.92
DDB1-218ENST00000540784 FAM208AQ9UK61 1670 aaKnown RBP20.77■□□□□ 0.92
DDB1-218ENST00000540784 ZCRB1Q8TBF4 217 aaKnown RBP20.76■□□□□ 0.91
DDB1-218ENST00000540784 DISP2A7MBM2 1401 aa20.76■□□□□ 0.91
DDB1-218ENST00000540784 HMOX1P09601 288 aa20.74■□□□□ 0.91
DDB1-218ENST00000540784 AEBP1Q8IUX7 1158 aa20.74■□□□□ 0.91
DDB1-218ENST00000540784 RGPD2P0DJD1 1756 aa20.74■□□□□ 0.91
DDB1-218ENST00000540784 FAM182BQ5T319 152 aa20.73■□□□□ 0.91
DDB1-218ENST00000540784 DDX54Q8TDD1 881 aaKnown RBP20.73■□□□□ 0.91
DDB1-218ENST00000540784 THSD7AQ9UPZ6 1657 aa20.73■□□□□ 0.91
DDB1-218ENST00000540784 U2AF1L5P0DN76 240 aaPredicted RBP20.72■□□□□ 0.91
DDB1-218ENST00000540784 U2AF1Q01081 240 aaKnown RBP eCLIP20.72■□□□□ 0.912e-7■■□□□ 11.4
DDB1-218ENST00000540784 SPG7Q9UQ90 795 aa20.72■□□□□ 0.91
DDB1-218ENST00000540784 COL3A1P02461 1466 aaPredicted RBP20.72■□□□□ 0.91
DDB1-218ENST00000540784 NCAPD2Q15021 1401 aa20.71■□□□□ 0.91
DDB1-218ENST00000540784 MARCH10Q8NA82 808 aaPredicted RBP20.71■□□□□ 0.91
DDB1-218ENST00000540784 PLEKHO1Q53GL0 409 aaPredicted RBP20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms