RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 ATRNO75882 1429 aa25.52■■□□□ 1.68
TNFRSF1A-213ENST00000540022 SLIT2O94813 1529 aa25.51■■□□□ 1.67
TNFRSF1A-213ENST00000540022 PLCH1Q4KWH8 1693 aa25.51■■□□□ 1.67
TNFRSF1A-213ENST00000540022 NFAT5O94916 1531 aa25.51■■□□□ 1.67
TNFRSF1A-213ENST00000540022 ZC3H6P61129 1189 aaKnown RBP25.5■■□□□ 1.67
TNFRSF1A-213ENST00000540022 TRPC5Q9UL62 973 aaPredicted RBP25.5■■□□□ 1.67
TNFRSF1A-213ENST00000540022 MAP3K19Q56UN5 1328 aa25.5■■□□□ 1.67
TNFRSF1A-213ENST00000540022 RGS12O14924 1447 aa25.49■■□□□ 1.67
TNFRSF1A-213ENST00000540022 NWD2Q9ULI1 1742 aa25.48■■□□□ 1.67
TNFRSF1A-213ENST00000540022 MRS2Q9HD23 443 aa25.48■■□□□ 1.67
TNFRSF1A-213ENST00000540022 SMG6Q86US8 1419 aaKnown RBP25.48■■□□□ 1.67
TNFRSF1A-213ENST00000540022 PPM1GO15355 546 aaPredicted RBP25.47■■□□□ 1.67
TNFRSF1A-213ENST00000540022 KIAA0232Q92628 1395 aa25.46■■□□□ 1.67
TNFRSF1A-213ENST00000540022 ARHGEF25Q86VW2 580 aa25.46■■□□□ 1.67
TNFRSF1A-213ENST00000540022 FAM83GA6ND36 823 aa25.45■■□□□ 1.66
TNFRSF1A-213ENST00000540022 CHRNA2Q15822 529 aa25.44■■□□□ 1.66
TNFRSF1A-213ENST00000540022 UNC5CLQ8IV45 518 aa25.43■■□□□ 1.66
TNFRSF1A-213ENST00000540022 ZBTB7CA1YPR0 619 aa25.42■■□□□ 1.66
TNFRSF1A-213ENST00000540022 AMPHP49418 695 aa25.42■■□□□ 1.66
TNFRSF1A-213ENST00000540022 CFAP53Q96M91 514 aa25.42■■□□□ 1.66
TNFRSF1A-213ENST00000540022 NRAPQ86VF7 1730 aa25.41■■□□□ 1.66
TNFRSF1A-213ENST00000540022 PRDM11Q9NQV5 511 aa25.41■■□□□ 1.66
TNFRSF1A-213ENST00000540022 GLI3P10071 1580 aa25.41■■□□□ 1.66
TNFRSF1A-213ENST00000540022 INSRP06213 1382 aa25.41■■□□□ 1.66
TNFRSF1A-213ENST00000540022 PEAK1Q9H792 1746 aa25.4■■□□□ 1.66
TNFRSF1A-213ENST00000540022 COL14A1Q05707 1796 aaKnown RBP25.4■■□□□ 1.66
TNFRSF1A-213ENST00000540022 HOXC9P31274 260 aa25.4■■□□□ 1.66
TNFRSF1A-213ENST00000540022 CPDO75976 1380 aa25.4■■□□□ 1.66
TNFRSF1A-213ENST00000540022 FLT4P35916 1363 aa25.4■■□□□ 1.66
TNFRSF1A-213ENST00000540022 KIF24Q5T7B8 1368 aa25.4■■□□□ 1.66
TNFRSF1A-213ENST00000540022 MAP2P11137 1827 aaKnown RBP25.4■■□□□ 1.66
TNFRSF1A-213ENST00000540022 HSP90AB2PQ58FF8 381 aa25.39■■□□□ 1.66
TNFRSF1A-213ENST00000540022 GJD4Q96KN9 370 aaPredicted RBP25.39■■□□□ 1.66
TNFRSF1A-213ENST00000540022 COL3A1P02461 1466 aaPredicted RBP25.39■■□□□ 1.65
TNFRSF1A-213ENST00000540022 RTL1A6NKG5 1358 aa25.38■■□□□ 1.65
TNFRSF1A-213ENST00000540022 IP6K1Q92551 441 aa25.37■■□□□ 1.65
TNFRSF1A-213ENST00000540022 PNISRQ8TF01 805 aaKnown RBP25.37■■□□□ 1.65
TNFRSF1A-213ENST00000540022 AXIN2Q9Y2T1 843 aa25.36■■□□□ 1.65
TNFRSF1A-213ENST00000540022 UPF1Q92900 1129 aaKnown RBP eCLIP25.35■■□□□ 1.65
TNFRSF1A-213ENST00000540022 DIAPH1O60610 1272 aaKnown RBP25.34■■□□□ 1.65
TNFRSF1A-213ENST00000540022 EP400Q96L91 3159 aa25.34■■□□□ 1.65
TNFRSF1A-213ENST00000540022 BTG4Q9NY30 223 aa25.33■■□□□ 1.65
TNFRSF1A-213ENST00000540022 LTN1O94822 1766 aa25.33■■□□□ 1.65
TNFRSF1A-213ENST00000540022 BRWD3Q6RI45 1802 aa25.33■■□□□ 1.64
TNFRSF1A-213ENST00000540022 EIF4A2Q14240 407 aaKnown RBP25.32■■□□□ 1.64
TNFRSF1A-213ENST00000540022 VPS72Q15906 364 aa25.32■■□□□ 1.64
TNFRSF1A-213ENST00000540022 CAMTA1Q9Y6Y1 1673 aa25.32■■□□□ 1.64
TNFRSF1A-213ENST00000540022 IL13P35225 146 aa25.32■■□□□ 1.64
TNFRSF1A-213ENST00000540022 LMO7Q8WWI1 1683 aa25.31■■□□□ 1.64
TNFRSF1A-213ENST00000540022 FAM9BQ8IZU0 186 aa25.31■■□□□ 1.64
TNFRSF1A-213ENST00000540022 COL18A1P39060 1754 aa25.31■■□□□ 1.64
TNFRSF1A-213ENST00000540022 BLMP54132 1417 aaPredicted RBP25.3■■□□□ 1.64
TNFRSF1A-213ENST00000540022 LTV1Q96GA3 475 aaPredicted RBP25.28■■□□□ 1.64
TNFRSF1A-213ENST00000540022 NUDCQ9Y266 331 aa25.28■■□□□ 1.64
TNFRSF1A-213ENST00000540022 ABCC6O95255 1503 aa25.28■■□□□ 1.64
TNFRSF1A-213ENST00000540022 WDR43Q15061 677 aaKnown RBP eCLIP25.27■■□□□ 1.64
TNFRSF1A-213ENST00000540022 U2SURPO15042 1029 aaKnown RBP25.27■■□□□ 1.64
TNFRSF1A-213ENST00000540022 ADAMTS8Q9UP79 889 aa25.27■■□□□ 1.64
TNFRSF1A-213ENST00000540022 STRN4Q9NRL3 753 aa25.26■■□□□ 1.63
TNFRSF1A-213ENST00000540022 ANKRD24Q8TF21 1146 aa25.25■■□□□ 1.63
TNFRSF1A-213ENST00000540022 CCDC9Q9Y3X0 531 aaKnown RBP25.25■■□□□ 1.63
TNFRSF1A-213ENST00000540022 COL5A2P05997 1499 aaPredicted RBP25.24■■□□□ 1.63
TNFRSF1A-213ENST00000540022 U2AF1L5P0DN76 240 aaPredicted RBP25.24■■□□□ 1.63
TNFRSF1A-213ENST00000540022 U2AF1Q01081 240 aaKnown RBP eCLIP25.24■■□□□ 1.63
TNFRSF1A-213ENST00000540022 ERBB3P21860 1342 aa25.24■■□□□ 1.63
TNFRSF1A-213ENST00000540022 LARP1Q6PKG0 1096 aaKnown RBP25.22■■□□□ 1.63
TNFRSF1A-213ENST00000540022 RGPD5Q99666 1765 aa25.22■■□□□ 1.63
TNFRSF1A-213ENST00000540022 ONECUT3O60422 494 aaPredicted RBP25.22■■□□□ 1.63
TNFRSF1A-213ENST00000540022 EYA1Q99502 592 aa25.22■■□□□ 1.63
TNFRSF1A-213ENST00000540022 EVA1CP58658 441 aa25.21■■□□□ 1.63
TNFRSF1A-213ENST00000540022 IGSF1Q8N6C5 1336 aa25.2■■□□□ 1.62
TNFRSF1A-213ENST00000540022 NBPF6Q5VWK0 638 aa25.19■■□□□ 1.62
TNFRSF1A-213ENST00000540022 SEPT12Q8IYM1 358 aa25.19■■□□□ 1.62
TNFRSF1A-213ENST00000540022 NBPF4Q96M43 638 aa25.19■■□□□ 1.62
TNFRSF1A-213ENST00000540022 SPATA31A5Q5VU36 1347 aa25.19■■□□□ 1.62
TNFRSF1A-213ENST00000540022 SPATA31A7Q8IWB4 1347 aa25.19■■□□□ 1.62
TNFRSF1A-213ENST00000540022 HMOX1P09601 288 aa25.18■■□□□ 1.62
TNFRSF1A-213ENST00000540022 CSB-PGBD3P0DP91 1061 aa25.17■■□□□ 1.62
TNFRSF1A-213ENST00000540022 SULT6B1Q6IMI4 303 aa25.17■■□□□ 1.62
TNFRSF1A-213ENST00000540022 AEBP1Q8IUX7 1158 aa25.17■■□□□ 1.62
TNFRSF1A-213ENST00000540022 RGPD1P0DJD0 1748 aa25.16■■□□□ 1.62
TNFRSF1A-213ENST00000540022 WDR17Q8IZU2 1322 aa25.16■■□□□ 1.62
TNFRSF1A-213ENST00000540022 USHBP1Q8N6Y0 703 aa25.16■■□□□ 1.62
TNFRSF1A-213ENST00000540022 THSD7AQ9UPZ6 1657 aa25.15■■□□□ 1.62
TNFRSF1A-213ENST00000540022 FAM98CQ17RN3 349 aaKnown RBP25.15■■□□□ 1.62
TNFRSF1A-213ENST00000540022 RSPH6AQ9H0K4 717 aa25.15■■□□□ 1.62
TNFRSF1A-213ENST00000540022 FCHSD2O94868 740 aa25.14■■□□□ 1.62
TNFRSF1A-213ENST00000540022 CCDC146Q8IYE0 955 aa25.14■■□□□ 1.62
TNFRSF1A-213ENST00000540022 NLRP2Q9NX02 1062 aa25.14■■□□□ 1.62
TNFRSF1A-213ENST00000540022 USP35Q9P2H5 1018 aa25.14■■□□□ 1.62
TNFRSF1A-213ENST00000540022 TOM1L2Q6ZVM7 507 aa25.13■■□□□ 1.61
TNFRSF1A-213ENST00000540022 KDRP35968 1356 aa25.13■■□□□ 1.61
TNFRSF1A-213ENST00000540022 SPATA31A1Q5TZJ5 1347 aa25.13■■□□□ 1.61
TNFRSF1A-213ENST00000540022 PRKAR2BP31323 418 aa25.12■■□□□ 1.61
TNFRSF1A-213ENST00000540022 PLEKHF1Q96S99 279 aa25.12■■□□□ 1.61
TNFRSF1A-213ENST00000540022 CRB1P82279 1406 aa25.11■■□□□ 1.61
TNFRSF1A-213ENST00000540022 NCAPD2Q15021 1401 aa25.11■■□□□ 1.61
TNFRSF1A-213ENST00000540022 A0A0G2JS52 829 aa25.09■■□□□ 1.61
TNFRSF1A-213ENST00000540022 MYT1Q01538 1121 aa25.09■■□□□ 1.61
TNFRSF1A-213ENST00000540022 KRT27Q7Z3Y8 459 aa25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms