RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 PTK2Q05397 1052 aa9.51□□□□□ -0.89
USP28-202ENST00000535607 VAC14Q08AM6 782 aa9.51□□□□□ -0.89
USP28-202ENST00000535607 FAM9AQ8IZU1 332 aaPredicted RBP9.51□□□□□ -0.89
USP28-202ENST00000535607 AQRO60306 1485 aaKnown RBP eCLIP9.51□□□□□ -0.89
USP28-202ENST00000535607 FHAD1B1AJZ9 1412 aa9.5□□□□□ -0.89
USP28-202ENST00000535607 AGERQ15109 404 aa9.5□□□□□ -0.89
USP28-202ENST00000535607 CCDC82Q8N4S0 544 aa9.5□□□□□ -0.89
USP28-202ENST00000535607 NKX2-3Q8TAU0 364 aa9.5□□□□□ -0.89
USP28-202ENST00000535607 FCF1Q9Y324 198 aaKnown RBP9.5□□□□□ -0.89
USP28-202ENST00000535607 SNAPC4Q5SXM2 1469 aa9.5□□□□□ -0.89
USP28-202ENST00000535607 RAPGEF2Q9Y4G8 1499 aa9.5□□□□□ -0.89
USP28-202ENST00000535607 SYNJ2O15056 1496 aa9.49□□□□□ -0.89
USP28-202ENST00000535607 ZBBXA8MT70 800 aa9.49□□□□□ -0.89
USP28-202ENST00000535607 IRF5Q13568 498 aa9.49□□□□□ -0.89
USP28-202ENST00000535607 GLMNQ92990 594 aa9.49□□□□□ -0.89
USP28-202ENST00000535607 ARXQ96QS3 562 aa9.49□□□□□ -0.89
USP28-202ENST00000535607 UNC93B1Q9H1C4 597 aa9.49□□□□□ -0.89
USP28-202ENST00000535607 ITGBL1O95965 494 aaPredicted RBP9.48□□□□□ -0.89
USP28-202ENST00000535607 NR1H3Q13133 447 aa9.48□□□□□ -0.89
USP28-202ENST00000535607 CARMIL1Q5VZK9 1371 aa9.48□□□□□ -0.89
USP28-202ENST00000535607 PDXDC2PQ6P474 469 aa9.47□□□□□ -0.89
USP28-202ENST00000535607 ZBTB33Q86T24 672 aa9.47□□□□□ -0.89
USP28-202ENST00000535607 HOMEZQ8IX15 550 aa9.47□□□□□ -0.89
USP28-202ENST00000535607 ARHGAP9Q9BRR9 750 aa9.47□□□□□ -0.89
USP28-202ENST00000535607 PLSCR2Q9NRY7 297 aa9.47□□□□□ -0.89
USP28-202ENST00000535607 GPSM3Q9Y4H4 160 aa9.47□□□□□ -0.89
USP28-202ENST00000535607 POM121CA8CG34 1229 aa9.46□□□□□ -0.9
USP28-202ENST00000535607 HDGFL1Q5TGJ6 251 aa9.46□□□□□ -0.9
USP28-202ENST00000535607 GRIN2AQ12879 1464 aa9.46□□□□□ -0.9
USP28-202ENST00000535607 CTTNBP2Q8WZ74 1663 aa9.45□□□□□ -0.9
USP28-202ENST00000535607 C1orf115Q9H7X2 142 aa9.44□□□□□ -0.9
USP28-202ENST00000535607 FBXO45P0C2W1 286 aa9.43□□□□□ -0.9
USP28-202ENST00000535607 MCCD1P59942 119 aaPredicted RBP9.43□□□□□ -0.9
USP28-202ENST00000535607 MMRN1Q13201 1228 aa9.43□□□□□ -0.9
USP28-202ENST00000535607 BPHLQ86WA6 291 aaPredicted RBP9.43□□□□□ -0.9
USP28-202ENST00000535607 ANKLE1Q8NAG6 615 aa9.43□□□□□ -0.9
USP28-202ENST00000535607 TNIKQ9UKE5 1360 aa9.42□□□□□ -0.9
USP28-202ENST00000535607 MAGEB6P1A0A0J9YX57 407 aa9.42□□□□□ -0.9
USP28-202ENST00000535607 LINC01559Q495D7 138 aa9.42□□□□□ -0.9
USP28-202ENST00000535607 CARD14Q9BXL6 1004 aa9.42□□□□□ -0.9
USP28-202ENST00000535607 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.42□□□□□ -0.9
USP28-202ENST00000535607 PCDHB9Q9Y5E1 797 aa9.42□□□□□ -0.9
USP28-202ENST00000535607 NUP160Q12769 1436 aa9.41□□□□□ -0.9
USP28-202ENST00000535607 RNF223E7ERA6 249 aa9.41□□□□□ -0.9
USP28-202ENST00000535607 PPEF1O14829 653 aaPredicted RBP9.41□□□□□ -0.9
USP28-202ENST00000535607 DZIP3Q86Y13 1208 aaKnown RBP9.41□□□□□ -0.9
USP28-202ENST00000535607 BAP1Q92560 729 aa9.41□□□□□ -0.9
USP28-202ENST00000535607 CHD1O14646 1710 aa9.41□□□□□ -0.9
USP28-202ENST00000535607 GPR37L1O60883 481 aa9.4□□□□□ -0.9
USP28-202ENST00000535607 PTCRAQ6ISU1 281 aaPredicted RBP9.4□□□□□ -0.9
USP28-202ENST00000535607 PPP1R18Q6NYC8 613 aa9.4□□□□□ -0.9
USP28-202ENST00000535607 YTHDC1Q96MU7 727 aaKnown RBP9.4□□□□□ -0.9
USP28-202ENST00000535607 IQGAP2Q13576 1575 aa9.39□□□□□ -0.91
USP28-202ENST00000535607 CD2BP2O95400 341 aaKnown RBP9.39□□□□□ -0.91
USP28-202ENST00000535607 ZNF511Q8NB15 262 aa9.39□□□□□ -0.91
USP28-202ENST00000535607 SLC10A4Q96EP9 437 aa9.39□□□□□ -0.91
USP28-202ENST00000535607 ANP32EQ9BTT0 268 aa9.39□□□□□ -0.91
USP28-202ENST00000535607 EFCAB5A4FU69 1503 aa9.39□□□□□ -0.91
USP28-202ENST00000535607 KIAA0586Q9BVV6 1533 aa9.38□□□□□ -0.91
USP28-202ENST00000535607 SLFNL1Q499Z3 407 aa9.38□□□□□ -0.91
USP28-202ENST00000535607 ADAM32Q8TC27 787 aa9.38□□□□□ -0.91
USP28-202ENST00000535607 CEP170Q5SW79 1584 aa9.37□□□□□ -0.91
USP28-202ENST00000535607 ALG2Q9H553 416 aa9.37□□□□□ -0.91
USP28-202ENST00000535607 RPIAP49247 311 aa9.36□□□□□ -0.91
USP28-202ENST00000535607 TRIM32Q13049 653 aa9.36□□□□□ -0.91
USP28-202ENST00000535607 CEP162Q5TB80 1403 aa9.36□□□□□ -0.91
USP28-202ENST00000535607 SH3BP5LQ7L8J4 393 aa9.35□□□□□ -0.91
USP28-202ENST00000535607 CHMP7Q8WUX9 453 aaPredicted RBP9.35□□□□□ -0.91
USP28-202ENST00000535607 CLASP1Q7Z460 1538 aa9.35□□□□□ -0.91
USP28-202ENST00000535607 UGGT2Q9NYU1 1516 aa9.35□□□□□ -0.91
USP28-202ENST00000535607 SAMD9Q5K651 1589 aa9.34□□□□□ -0.91
USP28-202ENST00000535607 WNT7BP56706 349 aa9.34□□□□□ -0.91
USP28-202ENST00000535607 NBPF20Q3BBV1 942 aa9.34□□□□□ -0.91
USP28-202ENST00000535607 TRIM52Q96A61 297 aa9.34□□□□□ -0.91
USP28-202ENST00000535607 CDV3Q9UKY7 258 aaKnown RBP9.34□□□□□ -0.91
USP28-202ENST00000535607 SHROOM2Q13796 1616 aa9.34□□□□□ -0.91
USP28-202ENST00000535607 RFX1P22670 979 aa9.33□□□□□ -0.92
USP28-202ENST00000535607 SH3BP2P78314 561 aa9.33□□□□□ -0.92
USP28-202ENST00000535607 RNF20Q5VTR2 975 aa9.33□□□□□ -0.92
USP28-202ENST00000535607 RNF135Q8IUD6 432 aa9.33□□□□□ -0.92
USP28-202ENST00000535607 EHBP1Q8NDI1 1231 aa9.33□□□□□ -0.92
USP28-202ENST00000535607 FAM174AQ8TBP5 190 aa9.33□□□□□ -0.92
USP28-202ENST00000535607 ADAMTS19Q8TE59 1207 aa9.33□□□□□ -0.92
USP28-202ENST00000535607 FOXJ1Q92949 421 aa9.33□□□□□ -0.92
USP28-202ENST00000535607 PPP1R12CQ9BZL4 782 aa9.33□□□□□ -0.92
USP28-202ENST00000535607 PLA2G2EQ9NZK7 142 aa9.33□□□□□ -0.92
USP28-202ENST00000535607 PPP1R15AO75807 674 aaPredicted RBP9.32□□□□□ -0.92
USP28-202ENST00000535607 SKIP12755 728 aa9.32□□□□□ -0.92
USP28-202ENST00000535607 LMOD1P29536 600 aaPredicted RBP9.32□□□□□ -0.92
USP28-202ENST00000535607 CLIP1P30622 1438 aa9.31□□□□□ -0.92
USP28-202ENST00000535607 PALM3A6NDB9 673 aaPredicted RBP9.31□□□□□ -0.92
USP28-202ENST00000535607 VARSP26640 1264 aaKnown RBP9.31□□□□□ -0.92
USP28-202ENST00000535607 IFFO2Q5TF58 517 aa9.31□□□□□ -0.92
USP28-202ENST00000535607 TFIP11Q9UBB9 837 aaKnown RBP9.31□□□□□ -0.92
USP28-202ENST00000535607 ATP9BO43861 1147 aa9.3□□□□□ -0.92
USP28-202ENST00000535607 ERFEQ4G0M1 354 aa9.3□□□□□ -0.92
USP28-202ENST00000535607 SH3RF1Q7Z6J0 888 aa9.3□□□□□ -0.92
USP28-202ENST00000535607 NFATC2IPQ8NCF5 419 aa9.3□□□□□ -0.92
USP28-202ENST00000535607 ESF1Q9H501 851 aaKnown RBP9.3□□□□□ -0.92
USP28-202ENST00000535607 CEP126Q9P2H0 1117 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 128.1 ms