RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 ZBTB7CA1YPR0 619 aa20.67■□□□□ 0.9
CPSF1-201ENST00000526271 PROM2Q8N271 834 aa20.67■□□□□ 0.9
CPSF1-201ENST00000526271 MARCH10Q8NA82 808 aaPredicted RBP20.67■□□□□ 0.9
CPSF1-201ENST00000526271 TTC21BQ7Z4L5 1316 aa20.67■□□□□ 0.9
CPSF1-201ENST00000526271 MON2Q7Z3U7 1717 aa20.67■□□□□ 0.9
CPSF1-201ENST00000526271 ARHGEF25Q86VW2 580 aa20.66■□□□□ 0.9
CPSF1-201ENST00000526271 PDGFDQ9GZP0 370 aaPredicted RBP20.66■□□□□ 0.9
CPSF1-201ENST00000526271 WDR17Q8IZU2 1322 aa20.65■□□□□ 0.9
CPSF1-201ENST00000526271 CD163L1Q9NR16 1453 aa20.64■□□□□ 0.89
CPSF1-201ENST00000526271 USP54Q70EL1 1684 aa20.64■□□□□ 0.89
CPSF1-201ENST00000526271 BCL9O00512 1426 aa20.62■□□□□ 0.89
CPSF1-201ENST00000526271 EVC2Q86UK5 1308 aa20.61■□□□□ 0.89
CPSF1-201ENST00000526271 PLSCR1O15162 318 aa20.61■□□□□ 0.89
CPSF1-201ENST00000526271 DDB1Q16531 1140 aa20.61■□□□□ 0.89
CPSF1-201ENST00000526271 TOM1L2Q6ZVM7 507 aa20.61■□□□□ 0.89
CPSF1-201ENST00000526271 UTRNP46939 3433 aa20.58■□□□□ 0.89
CPSF1-201ENST00000526271 SOX12O15370 315 aa20.58■□□□□ 0.89
CPSF1-201ENST00000526271 NBPF14Q5TI25 921 aa20.58■□□□□ 0.89
CPSF1-201ENST00000526271 BCL11BQ9C0K0 894 aaPredicted RBP20.58■□□□□ 0.89
CPSF1-201ENST00000526271 ROCK2O75116 1388 aaKnown RBP20.58■□□□□ 0.88
CPSF1-201ENST00000526271 MYOM1P52179 1685 aa20.58■□□□□ 0.88
CPSF1-201ENST00000526271 LTN1O94822 1766 aa20.57■□□□□ 0.88
CPSF1-201ENST00000526271 KCNQ2O43526 872 aa20.57■□□□□ 0.88
CPSF1-201ENST00000526271 CARD10Q9BWT7 1032 aa20.57■□□□□ 0.88
CPSF1-201ENST00000526271 ABCC6O95255 1503 aa20.56■□□□□ 0.88
CPSF1-201ENST00000526271 SBNO2Q9Y2G9 1366 aa20.56■□□□□ 0.88
CPSF1-201ENST00000526271 TTC21AQ8NDW8 1320 aa20.55■□□□□ 0.88
CPSF1-201ENST00000526271 NHSQ6T4R5 1651 aa20.55■□□□□ 0.88
CPSF1-201ENST00000526271 SPON1Q9HCB6 807 aa20.55■□□□□ 0.88
CPSF1-201ENST00000526271 PAPPAQ13219 1627 aa20.54■□□□□ 0.88
CPSF1-201ENST00000526271 ZNF692Q9BU19 519 aaPredicted RBP20.54■□□□□ 0.88
CPSF1-201ENST00000526271 USP31Q70CQ4 1352 aa20.54■□□□□ 0.88
CPSF1-201ENST00000526271 TNS2Q63HR2 1409 aa20.53■□□□□ 0.88
CPSF1-201ENST00000526271 PTGER2P43116 358 aa20.53■□□□□ 0.88
CPSF1-201ENST00000526271 NEUROD1Q13562 356 aa20.53■□□□□ 0.88
CPSF1-201ENST00000526271 KTN1Q86UP2 1357 aaKnown RBP20.53■□□□□ 0.88
CPSF1-201ENST00000526271 C11orf95C9JLR9 678 aaPredicted RBP20.52■□□□□ 0.88
CPSF1-201ENST00000526271 NME9Q86XW9 330 aa20.52■□□□□ 0.88
CPSF1-201ENST00000526271 KCNH5Q8NCM2 988 aa20.52■□□□□ 0.88
CPSF1-201ENST00000526271 NINLQ9Y2I6 1382 aa20.5■□□□□ 0.87
CPSF1-201ENST00000526271 TXNRD1Q16881 649 aa20.5■□□□□ 0.87
CPSF1-201ENST00000526271 BTAF1O14981 1849 aa20.5■□□□□ 0.87
CPSF1-201ENST00000526271 CDCA7Q9BWT1 371 aaPredicted RBP20.49■□□□□ 0.87
CPSF1-201ENST00000526271 ERBB3P21860 1342 aa20.49■□□□□ 0.87
CPSF1-201ENST00000526271 CCDC7Q96M83 1385 aa20.48■□□□□ 0.87
CPSF1-201ENST00000526271 ZBTB7AO95365 584 aa20.48■□□□□ 0.87
CPSF1-201ENST00000526271 CSB-PGBD3P0DP91 1061 aa20.48■□□□□ 0.87
CPSF1-201ENST00000526271 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.48■□□□□ 0.87
CPSF1-201ENST00000526271 SGIP1Q9BQI5 828 aa20.47■□□□□ 0.87
CPSF1-201ENST00000526271 YY1P25490 414 aa20.46■□□□□ 0.87
CPSF1-201ENST00000526271 SLC12A5Q9H2X9 1139 aa20.46■□□□□ 0.87
CPSF1-201ENST00000526271 EXOC5O00471 708 aa20.45■□□□□ 0.86
CPSF1-201ENST00000526271 SHANK3Q9BYB0 1731 aa20.44■□□□□ 0.86
CPSF1-201ENST00000526271 RGPD2P0DJD1 1756 aa20.44■□□□□ 0.86
CPSF1-201ENST00000526271 SLC15A2Q16348 729 aa20.44■□□□□ 0.86
CPSF1-201ENST00000526271 ACSBG1Q96GR2 724 aa20.44■□□□□ 0.86
CPSF1-201ENST00000526271 PPP1R1BQ9UD71 204 aaPredicted RBP20.44■□□□□ 0.86
CPSF1-201ENST00000526271 ATF5Q9Y2D1 282 aaPredicted RBP20.44■□□□□ 0.86
CPSF1-201ENST00000526271 A0A1W2PP64 1363 aa20.44■□□□□ 0.86
CPSF1-201ENST00000526271 FAM208AQ9UK61 1670 aaKnown RBP20.43■□□□□ 0.86
CPSF1-201ENST00000526271 KAT6BQ8WYB5 2073 aa20.42■□□□□ 0.86
CPSF1-201ENST00000526271 TUBGCP6Q96RT7 1819 aa20.42■□□□□ 0.86
CPSF1-201ENST00000526271 ZNF827Q17R98 1081 aa20.41■□□□□ 0.86
CPSF1-201ENST00000526271 LRRC4BQ9NT99 713 aa20.41■□□□□ 0.86
CPSF1-201ENST00000526271 EDC4Q6P2E9 1401 aaKnown RBP20.41■□□□□ 0.86
CPSF1-201ENST00000526271 COL24A1Q17RW2 1714 aa20.4■□□□□ 0.86
CPSF1-201ENST00000526271 ANKRD24Q8TF21 1146 aa20.4■□□□□ 0.86
CPSF1-201ENST00000526271 NLRP2Q9NX02 1062 aa20.4■□□□□ 0.86
CPSF1-201ENST00000526271 FBLN1P23142 703 aa20.39■□□□□ 0.85
CPSF1-201ENST00000526271 CARD11Q9BXL7 1154 aa20.39■□□□□ 0.85
CPSF1-201ENST00000526271 TESK2Q96S53 571 aa20.38■□□□□ 0.85
CPSF1-201ENST00000526271 STK32BQ9NY57 414 aa20.38■□□□□ 0.85
CPSF1-201ENST00000526271 IL2RBP14784 551 aa20.37■□□□□ 0.85
CPSF1-201ENST00000526271 TMC1Q8TDI8 760 aa20.37■□□□□ 0.85
CPSF1-201ENST00000526271 QSER1Q2KHR3 1735 aa20.36■□□□□ 0.85
CPSF1-201ENST00000526271 SYT17Q9BSW7 474 aa20.36■□□□□ 0.85
CPSF1-201ENST00000526271 FHDC1Q9C0D6 1143 aaPredicted RBP20.36■□□□□ 0.85
CPSF1-201ENST00000526271 DOT1LQ8TEK3 1739 aa20.35■□□□□ 0.85
CPSF1-201ENST00000526271 NSD2O96028 1365 aa20.34■□□□□ 0.85
CPSF1-201ENST00000526271 GOLGB1Q14789 3259 aaKnown RBP20.34■□□□□ 0.85
CPSF1-201ENST00000526271 LY75O60449 1722 aa20.34■□□□□ 0.85
CPSF1-201ENST00000526271 MTFR1LQ9H019 292 aa20.34■□□□□ 0.85
CPSF1-201ENST00000526271 IP6K1Q92551 441 aa20.33■□□□□ 0.85
CPSF1-201ENST00000526271 CHD4Q14839 1912 aa20.32■□□□□ 0.84
CPSF1-201ENST00000526271 AKT1S1Q96B36 256 aa20.32■□□□□ 0.84
CPSF1-201ENST00000526271 MEGF6O75095 1541 aa20.32■□□□□ 0.84
CPSF1-201ENST00000526271 MAP3K19Q56UN5 1328 aa20.31■□□□□ 0.84
CPSF1-201ENST00000526271 KCNQ4P56696 695 aa20.31■□□□□ 0.84
CPSF1-201ENST00000526271 HDGFL2Q7Z4V5 671 aaPredicted RBP20.31■□□□□ 0.84
CPSF1-201ENST00000526271 PUS7Q96PZ0 661 aaKnown RBP20.3■□□□□ 0.84
CPSF1-201ENST00000526271 LTV1Q96GA3 475 aaPredicted RBP20.29■□□□□ 0.84
CPSF1-201ENST00000526271 ST20-MTHFSA0A0A6YYL1 179 aa20.28■□□□□ 0.84
CPSF1-201ENST00000526271 HOXC9P31274 260 aa20.28■□□□□ 0.84
CPSF1-201ENST00000526271 MAP3K5Q99683 1374 aa20.27■□□□□ 0.84
CPSF1-201ENST00000526271 ZNF784Q8NCA9 323 aaPredicted RBP20.27■□□□□ 0.84
CPSF1-201ENST00000526271 TERF2IPQ9NYB0 399 aa20.27■□□□□ 0.84
CPSF1-201ENST00000526271 PNPLA7Q6ZV29 1317 aa20.27■□□□□ 0.83
CPSF1-201ENST00000526271 DDX54Q8TDD1 881 aaKnown RBP20.26■□□□□ 0.83
CPSF1-201ENST00000526271 ARXQ96QS3 562 aa20.25■□□□□ 0.83
CPSF1-201ENST00000526271 ANKRD36BQ8N2N9 1353 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms