RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 USP21Q9UK80 565 aa17.42■□□□□ 0.38
LIMCH1-220ENST00000514190 ARHGEF25Q86VW2 580 aa17.41■□□□□ 0.38
LIMCH1-220ENST00000514190 KIF24Q5T7B8 1368 aa17.4■□□□□ 0.38
LIMCH1-220ENST00000514190 AMPHP49418 695 aa17.4■□□□□ 0.38
LIMCH1-220ENST00000514190 HAP1P54257 671 aaPredicted RBP17.4■□□□□ 0.38
LIMCH1-220ENST00000514190 RBM6P78332 1123 aaKnown RBP17.4■□□□□ 0.38
LIMCH1-220ENST00000514190 FAM9BQ8IZU0 186 aa17.4■□□□□ 0.38
LIMCH1-220ENST00000514190 NFAT5O94916 1531 aa17.4■□□□□ 0.38
LIMCH1-220ENST00000514190 BCL9LQ86UU0 1499 aa17.39■□□□□ 0.37
LIMCH1-220ENST00000514190 DIAPH1O60610 1272 aaKnown RBP17.39■□□□□ 0.37
LIMCH1-220ENST00000514190 TRPC5Q9UL62 973 aaPredicted RBP17.39■□□□□ 0.37
LIMCH1-220ENST00000514190 ATRNO75882 1429 aa17.38■□□□□ 0.37
LIMCH1-220ENST00000514190 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.38■□□□□ 0.37
LIMCH1-220ENST00000514190 MAP2P11137 1827 aaKnown RBP17.38■□□□□ 0.37
LIMCH1-220ENST00000514190 WDR43Q15061 677 aaKnown RBP eCLIP17.38■□□□□ 0.37
LIMCH1-220ENST00000514190 HSP90AB2PQ58FF8 381 aa17.38■□□□□ 0.37
LIMCH1-220ENST00000514190 IP6K1Q92551 441 aa17.38■□□□□ 0.37
LIMCH1-220ENST00000514190 NUDCQ9Y266 331 aa17.38■□□□□ 0.37
LIMCH1-220ENST00000514190 FLT4P35916 1363 aa17.38■□□□□ 0.37
LIMCH1-220ENST00000514190 COL3A1P02461 1466 aaPredicted RBP17.37■□□□□ 0.37
LIMCH1-220ENST00000514190 SLIT2O94813 1529 aa17.37■□□□□ 0.37
LIMCH1-220ENST00000514190 HOXC9P31274 260 aa17.37■□□□□ 0.37
LIMCH1-220ENST00000514190 ZC3H6P61129 1189 aaKnown RBP17.37■□□□□ 0.37
LIMCH1-220ENST00000514190 ADAMTS8Q9UP79 889 aa17.37■□□□□ 0.37
LIMCH1-220ENST00000514190 RGS12O14924 1447 aa17.37■□□□□ 0.37
LIMCH1-220ENST00000514190 IL13P35225 146 aa17.36■□□□□ 0.37
LIMCH1-220ENST00000514190 RTL1A6NKG5 1358 aa17.36■□□□□ 0.37
LIMCH1-220ENST00000514190 CRYBG1Q9Y4K1 1723 aa17.35■□□□□ 0.37
LIMCH1-220ENST00000514190 CPDO75976 1380 aa17.35■□□□□ 0.37
LIMCH1-220ENST00000514190 PLCH1Q4KWH8 1693 aa17.35■□□□□ 0.37
LIMCH1-220ENST00000514190 EIF4A2Q14240 407 aaKnown RBP17.34■□□□□ 0.37
LIMCH1-220ENST00000514190 NWD2Q9ULI1 1742 aa17.34■□□□□ 0.37
LIMCH1-220ENST00000514190 ZBTB7CA1YPR0 619 aa17.33■□□□□ 0.36
LIMCH1-220ENST00000514190 UNC5CLQ8IV45 518 aa17.33■□□□□ 0.36
LIMCH1-220ENST00000514190 PEAK1Q9H792 1746 aa17.33■□□□□ 0.36
LIMCH1-220ENST00000514190 U2SURPO15042 1029 aaKnown RBP17.32■□□□□ 0.36
LIMCH1-220ENST00000514190 U2AF1L5P0DN76 240 aaPredicted RBP17.32■□□□□ 0.36
LIMCH1-220ENST00000514190 U2AF1Q01081 240 aaKnown RBP eCLIP17.32■□□□□ 0.36
LIMCH1-220ENST00000514190 KIAA0232Q92628 1395 aa17.31■□□□□ 0.36
LIMCH1-220ENST00000514190 PHRF1Q9P1Y6 1649 aaKnown RBP17.31■□□□□ 0.36
LIMCH1-220ENST00000514190 GJD4Q96KN9 370 aaPredicted RBP17.3■□□□□ 0.36
LIMCH1-220ENST00000514190 PRDM11Q9NQV5 511 aa17.3■□□□□ 0.36
LIMCH1-220ENST00000514190 AXIN2Q9Y2T1 843 aa17.3■□□□□ 0.36
LIMCH1-220ENST00000514190 COL14A1Q05707 1796 aaKnown RBP17.3■□□□□ 0.36
LIMCH1-220ENST00000514190 FAM83GA6ND36 823 aa17.29■□□□□ 0.36
LIMCH1-220ENST00000514190 CHRNA2Q15822 529 aa17.29■□□□□ 0.36
LIMCH1-220ENST00000514190 BLMP54132 1417 aaPredicted RBP17.29■□□□□ 0.36
LIMCH1-220ENST00000514190 GLI3P10071 1580 aa17.28■□□□□ 0.36
LIMCH1-220ENST00000514190 LTV1Q96GA3 475 aaPredicted RBP17.28■□□□□ 0.36
LIMCH1-220ENST00000514190 YTHDC1Q96MU7 727 aaKnown RBP17.28■□□□□ 0.36
LIMCH1-220ENST00000514190 NRAPQ86VF7 1730 aa17.27■□□□□ 0.36
LIMCH1-220ENST00000514190 FCHSD2O94868 740 aa17.27■□□□□ 0.36
LIMCH1-220ENST00000514190 EYA1Q99502 592 aa17.27■□□□□ 0.36
LIMCH1-220ENST00000514190 LTN1O94822 1766 aa17.26■□□□□ 0.35
LIMCH1-220ENST00000514190 VPS72Q15906 364 aa17.26■□□□□ 0.35
LIMCH1-220ENST00000514190 ANKRD24Q8TF21 1146 aa17.26■□□□□ 0.35
LIMCH1-220ENST00000514190 UPF1Q92900 1129 aaKnown RBP eCLIP17.26■□□□□ 0.35
LIMCH1-220ENST00000514190 PNNQ9H307 717 aaKnown RBP17.26■□□□□ 0.35
LIMCH1-220ENST00000514190 RUNDC1Q96C34 613 aa17.25■□□□□ 0.35
LIMCH1-220ENST00000514190 ABCC6O95255 1503 aa17.25■□□□□ 0.35
LIMCH1-220ENST00000514190 IGSF1Q8N6C5 1336 aa17.24■□□□□ 0.35
LIMCH1-220ENST00000514190 HMOX1P09601 288 aa17.24■□□□□ 0.35
LIMCH1-220ENST00000514190 HNRNPUQ00839 825 aaKnown RBP eCLIP17.24■□□□□ 0.35
LIMCH1-220ENST00000514190 CCDC146Q8IYE0 955 aa17.24■□□□□ 0.35
LIMCH1-220ENST00000514190 RSPH6AQ9H0K4 717 aa17.24■□□□□ 0.35
LIMCH1-220ENST00000514190 BTG4Q9NY30 223 aa17.24■□□□□ 0.35
LIMCH1-220ENST00000514190 ERBB3P21860 1342 aa17.23■□□□□ 0.35
LIMCH1-220ENST00000514190 COL18A1P39060 1754 aa17.23■□□□□ 0.35
LIMCH1-220ENST00000514190 NBPF6Q5VWK0 638 aa17.23■□□□□ 0.35
LIMCH1-220ENST00000514190 SULT6B1Q6IMI4 303 aa17.23■□□□□ 0.35
LIMCH1-220ENST00000514190 NBPF4Q96M43 638 aa17.23■□□□□ 0.35
LIMCH1-220ENST00000514190 PLEKHF1Q96S99 279 aa17.23■□□□□ 0.35
LIMCH1-220ENST00000514190 EP400Q96L91 3159 aa17.23■□□□□ 0.35
LIMCH1-220ENST00000514190 AEBP1Q8IUX7 1158 aa17.22■□□□□ 0.35
LIMCH1-220ENST00000514190 CCDC9Q9Y3X0 531 aaKnown RBP17.22■□□□□ 0.35
LIMCH1-220ENST00000514190 PRKAR2BP31323 418 aa17.21■□□□□ 0.35
LIMCH1-220ENST00000514190 CAMTA1Q9Y6Y1 1673 aa17.2■□□□□ 0.34
LIMCH1-220ENST00000514190 KDRP35968 1356 aa17.2■□□□□ 0.34
LIMCH1-220ENST00000514190 APAF1O14727 1248 aa17.2■□□□□ 0.34
LIMCH1-220ENST00000514190 CSB-PGBD3P0DP91 1061 aa17.2■□□□□ 0.34
LIMCH1-220ENST00000514190 EVA1CP58658 441 aa17.19■□□□□ 0.34
LIMCH1-220ENST00000514190 TCP11L2Q8N4U5 519 aa17.19■□□□□ 0.34
LIMCH1-220ENST00000514190 RGPD1P0DJD0 1748 aa17.18■□□□□ 0.34
LIMCH1-220ENST00000514190 LMO7Q8WWI1 1683 aa17.18■□□□□ 0.34
LIMCH1-220ENST00000514190 NEFMP07197 916 aa17.18■□□□□ 0.34
LIMCH1-220ENST00000514190 NGEFQ8N5V2 710 aa17.18■□□□□ 0.34
LIMCH1-220ENST00000514190 NLRP2Q9NX02 1062 aa17.18■□□□□ 0.34
LIMCH1-220ENST00000514190 BRWD3Q6RI45 1802 aa17.18■□□□□ 0.34
LIMCH1-220ENST00000514190 WDR17Q8IZU2 1322 aa17.18■□□□□ 0.34
LIMCH1-220ENST00000514190 MAPK8IP3Q9UPT6 1336 aa17.18■□□□□ 0.34
LIMCH1-220ENST00000514190 ONECUT3O60422 494 aaPredicted RBP17.17■□□□□ 0.34
LIMCH1-220ENST00000514190 NCBP3Q53F19 620 aaKnown RBP17.17■□□□□ 0.34
LIMCH1-220ENST00000514190 SEPT12Q8IYM1 358 aa17.17■□□□□ 0.34
LIMCH1-220ENST00000514190 USHBP1Q8N6Y0 703 aa17.17■□□□□ 0.34
LIMCH1-220ENST00000514190 PHACTR3Q96KR7 559 aa17.17■□□□□ 0.34
LIMCH1-220ENST00000514190 NCAPD2Q15021 1401 aa17.16■□□□□ 0.34
LIMCH1-220ENST00000514190 SENP3-EIF4A1A0A087X0R7 540 aa17.16■□□□□ 0.34
LIMCH1-220ENST00000514190 COL5A2P05997 1499 aaPredicted RBP17.16■□□□□ 0.34
LIMCH1-220ENST00000514190 SPATA31A5Q5VU36 1347 aa17.16■□□□□ 0.34
LIMCH1-220ENST00000514190 ZBED9Q6R2W3 1325 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms