RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 TRAK1Q9UPV9 953 aa13.73□□□□□ -0.21
NUP54-211ENST00000512151 EIF3AQ14152 1382 aaKnown RBP13.73□□□□□ -0.21
NUP54-211ENST00000512151 USP19O94966 1318 aa13.72□□□□□ -0.21
NUP54-211ENST00000512151 CRB1P82279 1406 aa13.72□□□□□ -0.21
NUP54-211ENST00000512151 DDB1Q16531 1140 aa13.71□□□□□ -0.21
NUP54-211ENST00000512151 BCL9O00512 1426 aa13.71□□□□□ -0.22
NUP54-211ENST00000512151 PELP1Q8IZL8 1130 aaKnown RBP13.71□□□□□ -0.22
NUP54-211ENST00000512151 NUDT16Q96DE0 195 aaKnown RBP13.71□□□□□ -0.22
NUP54-211ENST00000512151 PAPPAQ13219 1627 aa13.7□□□□□ -0.22
NUP54-211ENST00000512151 HSPA6P17066 643 aa13.7□□□□□ -0.22
NUP54-211ENST00000512151 AATKQ6ZMQ8 1374 aa13.69□□□□□ -0.22
NUP54-211ENST00000512151 ITSN1Q15811 1721 aa13.69□□□□□ -0.22
NUP54-211ENST00000512151 ZNF827Q17R98 1081 aa13.69□□□□□ -0.22
NUP54-211ENST00000512151 NLGN2Q8NFZ4 835 aa13.69□□□□□ -0.22
NUP54-211ENST00000512151 WNK3Q9BYP7 1800 aa13.68□□□□□ -0.22
NUP54-211ENST00000512151 ATP10DQ9P241 1426 aa13.68□□□□□ -0.22
NUP54-211ENST00000512151 POLR3AO14802 1390 aaPredicted RBP13.68□□□□□ -0.22
NUP54-211ENST00000512151 ACEP12821 1306 aa13.68□□□□□ -0.22
NUP54-211ENST00000512151 GCP02774 474 aa13.68□□□□□ -0.22
NUP54-211ENST00000512151 YBX3P16989 372 aaKnown RBP eCLIP13.68□□□□□ -0.221e-9■■■■■ 32.2
NUP54-211ENST00000512151 KLHL34Q8N239 644 aa13.68□□□□□ -0.22
NUP54-211ENST00000512151 AKAP12Q02952 1782 aa13.67□□□□□ -0.22
NUP54-211ENST00000512151 ABTB2Q8N961 1025 aa13.67□□□□□ -0.22
NUP54-211ENST00000512151 TOPAZ1Q8N9V7 1692 aa13.65□□□□□ -0.22
NUP54-211ENST00000512151 ZBTB7CA1YPR0 619 aa13.65□□□□□ -0.22
NUP54-211ENST00000512151 COL24A1Q17RW2 1714 aa13.65□□□□□ -0.22
NUP54-211ENST00000512151 COL18A1P39060 1754 aa13.64□□□□□ -0.23
NUP54-211ENST00000512151 HOXD11P31277 338 aaPredicted RBP13.64□□□□□ -0.23
NUP54-211ENST00000512151 TOM1L2Q6ZVM7 507 aa13.64□□□□□ -0.23
NUP54-211ENST00000512151 MPHOSPH9Q99550 1183 aa13.64□□□□□ -0.23
NUP54-211ENST00000512151 AXIN2Q9Y2T1 843 aa13.63□□□□□ -0.23
NUP54-211ENST00000512151 PLEKHG3A1L390 1219 aa13.62□□□□□ -0.23
NUP54-211ENST00000512151 CDK19Q9BWU1 502 aa13.62□□□□□ -0.23
NUP54-211ENST00000512151 LRRC4BQ9NT99 713 aa13.62□□□□□ -0.23
NUP54-211ENST00000512151 GOLGB1Q14789 3259 aaKnown RBP13.62□□□□□ -0.23
NUP54-211ENST00000512151 NHSQ6T4R5 1651 aa13.62□□□□□ -0.23
NUP54-211ENST00000512151 NLRP13Q86W25 1043 aa13.61□□□□□ -0.23
NUP54-211ENST00000512151 ACSBG1Q96GR2 724 aa13.61□□□□□ -0.23
NUP54-211ENST00000512151 WDR17Q8IZU2 1322 aa13.61□□□□□ -0.23
NUP54-211ENST00000512151 ARHGEF28Q8N1W1 1705 aaKnown RBP13.6□□□□□ -0.23
NUP54-211ENST00000512151 ZNF526Q8TF50 670 aaPredicted RBP13.6□□□□□ -0.23
NUP54-211ENST00000512151 AKT1S1Q96B36 256 aa13.6□□□□□ -0.23
NUP54-211ENST00000512151 GPBP1L1Q9HC44 474 aaPredicted RBP13.6□□□□□ -0.23
NUP54-211ENST00000512151 ADCY9O60503 1353 aa13.6□□□□□ -0.23
NUP54-211ENST00000512151 SLIT3O75094 1523 aa13.59□□□□□ -0.23
NUP54-211ENST00000512151 PNPLA7Q6ZV29 1317 aa13.59□□□□□ -0.23
NUP54-211ENST00000512151 GRIN3BO60391 1043 aa13.58□□□□□ -0.23
NUP54-211ENST00000512151 POLD1P28340 1107 aa13.58□□□□□ -0.23
NUP54-211ENST00000512151 CDCA7Q9BWT1 371 aaPredicted RBP13.58□□□□□ -0.23
NUP54-211ENST00000512151 CCDC61Q9Y6R9 512 aa13.58□□□□□ -0.23
NUP54-211ENST00000512151 BTAF1O14981 1849 aa13.58□□□□□ -0.24
NUP54-211ENST00000512151 TUBGCP6Q96RT7 1819 aa13.58□□□□□ -0.24
NUP54-211ENST00000512151 CAPN15O75808 1086 aa13.58□□□□□ -0.24
NUP54-211ENST00000512151 RGPD5Q99666 1765 aa13.57□□□□□ -0.24
NUP54-211ENST00000512151 QSER1Q2KHR3 1735 aa13.57□□□□□ -0.24
NUP54-211ENST00000512151 EXOC5O00471 708 aa13.57□□□□□ -0.24
NUP54-211ENST00000512151 DNAJC5GQ8N7S2 189 aa13.57□□□□□ -0.24
NUP54-211ENST00000512151 SLC16A10Q8TF71 515 aa13.57□□□□□ -0.24
NUP54-211ENST00000512151 CARD10Q9BWT7 1032 aa13.57□□□□□ -0.24
NUP54-211ENST00000512151 TNS2Q63HR2 1409 aa13.57□□□□□ -0.24
NUP54-211ENST00000512151 USP6P35125 1406 aa13.56□□□□□ -0.24
NUP54-211ENST00000512151 COL13A1Q5TAT6 717 aaPredicted RBP13.56□□□□□ -0.24
NUP54-211ENST00000512151 KIF3CO14782 793 aa13.55□□□□□ -0.24
NUP54-211ENST00000512151 NLRP6P59044 892 aa13.55□□□□□ -0.24
NUP54-211ENST00000512151 CPSF1Q10570 1443 aaKnown RBP13.54□□□□□ -0.24
NUP54-211ENST00000512151 KCNQ4P56696 695 aa13.54□□□□□ -0.24
NUP54-211ENST00000512151 KDM2AQ9Y2K7 1162 aa13.54□□□□□ -0.24
NUP54-211ENST00000512151 BRD4O60885 1362 aaPredicted RBP13.53□□□□□ -0.24
NUP54-211ENST00000512151 TRPM1Q7Z4N2 1603 aa13.53□□□□□ -0.24
NUP54-211ENST00000512151 PPIP5K1Q6PFW1 1433 aa13.52□□□□□ -0.24
NUP54-211ENST00000512151 ABCC6O95255 1503 aa13.52□□□□□ -0.25
NUP54-211ENST00000512151 ARHGEF25Q86VW2 580 aa13.52□□□□□ -0.25
NUP54-211ENST00000512151 PIK3C2AO00443 1686 aa13.52□□□□□ -0.25
NUP54-211ENST00000512151 CSB-PGBD3P0DP91 1061 aa13.51□□□□□ -0.25
NUP54-211ENST00000512151 APLP1P51693 650 aa13.51□□□□□ -0.25
NUP54-211ENST00000512151 KAT6BQ8WYB5 2073 aa13.51□□□□□ -0.25
NUP54-211ENST00000512151 TFCP2L1Q9NZI6 479 aa13.5□□□□□ -0.25
NUP54-211ENST00000512151 DCAF11Q8TEB1 546 aa13.49□□□□□ -0.25
NUP54-211ENST00000512151 CCDC7Q96M83 1385 aa13.49□□□□□ -0.25
NUP54-211ENST00000512151 PRELPP51888 382 aa13.48□□□□□ -0.25
NUP54-211ENST00000512151 MSL1Q68DK7 614 aa13.48□□□□□ -0.25
NUP54-211ENST00000512151 CABP2Q9NPB3 220 aa13.48□□□□□ -0.25
NUP54-211ENST00000512151 SOX12O15370 315 aa13.47□□□□□ -0.25
NUP54-211ENST00000512151 SLC27A3Q5K4L6 730 aa13.47□□□□□ -0.25
NUP54-211ENST00000512151 COL23A1Q86Y22 540 aaPredicted RBP13.46□□□□□ -0.25
NUP54-211ENST00000512151 SRPK2P78362 688 aaKnown RBP13.45□□□□□ -0.26
NUP54-211ENST00000512151 HTRA3P83110 453 aa13.45□□□□□ -0.26
NUP54-211ENST00000512151 CABP1Q9NZU7 370 aa13.45□□□□□ -0.26
NUP54-211ENST00000512151 WWC3Q9ULE0 1092 aa13.45□□□□□ -0.26
NUP54-211ENST00000512151 NFAT5O94916 1531 aa13.45□□□□□ -0.26
NUP54-211ENST00000512151 TNS4Q8IZW8 715 aa13.45□□□□□ -0.26
NUP54-211ENST00000512151 CD2APQ9Y5K6 639 aa13.44□□□□□ -0.26
NUP54-211ENST00000512151 WDR90Q96KV7 1748 aa13.43□□□□□ -0.26
NUP54-211ENST00000512151 JMYQ8N9B5 988 aa13.43□□□□□ -0.26
NUP54-211ENST00000512151 LY75O60449 1722 aa13.42□□□□□ -0.26
NUP54-211ENST00000512151 IL2RBP14784 551 aa13.42□□□□□ -0.26
NUP54-211ENST00000512151 NLRP2Q9NX02 1062 aa13.42□□□□□ -0.26
NUP54-211ENST00000512151 NSD2O96028 1365 aa13.41□□□□□ -0.26
NUP54-211ENST00000512151 QRICH2Q9H0J4 1663 aa13.41□□□□□ -0.26
NUP54-211ENST00000512151 KLRG1Q96E93 195 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms