RNA–Protein interactions for RNA: ENST00000511424.5

LIMCH1-212, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-212ENST00000511424 KCTD15Q96SI1 283 aaPredicted RBP5.75□□□□□ -1.49
LIMCH1-212ENST00000511424 PRM3Q9NNZ6 103 aa5.75□□□□□ -1.49
LIMCH1-212ENST00000511424 PGPEP1Q9NXJ5 209 aa5.75□□□□□ -1.49
LIMCH1-212ENST00000511424 GPSM3Q9Y4H4 160 aa5.75□□□□□ -1.49
LIMCH1-212ENST00000511424 MAP4K5Q9Y4K4 846 aa5.75□□□□□ -1.49
LIMCH1-212ENST00000511424 EMILIN1Q9Y6C2 1016 aa5.75□□□□□ -1.49
LIMCH1-212ENST00000511424 BMP2P12643 396 aa5.74□□□□□ -1.49
LIMCH1-212ENST00000511424 SNRPBP14678 240 aaKnown RBP5.74□□□□□ -1.49
LIMCH1-212ENST00000511424 MRPL14Q6P1L8 145 aaKnown RBP5.74□□□□□ -1.49
LIMCH1-212ENST00000511424 BANK1Q8NDB2 785 aa5.74□□□□□ -1.49
LIMCH1-212ENST00000511424 TRIM47Q96LD4 638 aa5.74□□□□□ -1.49
LIMCH1-212ENST00000511424 PCDHB9Q9Y5E1 797 aa5.74□□□□□ -1.49
LIMCH1-212ENST00000511424 DHX9Q08211 1270 aaKnown RBP5.73□□□□□ -1.49
LIMCH1-212ENST00000511424 TRIM46Q7Z4K8 759 aa5.73□□□□□ -1.49
LIMCH1-212ENST00000511424 ZFP42Q96MM3 310 aa5.73□□□□□ -1.49
LIMCH1-212ENST00000511424 TRIM34Q9BYJ4 488 aa5.73□□□□□ -1.49
LIMCH1-212ENST00000511424 ZNF330Q9Y3S2 320 aaPredicted RBP5.73□□□□□ -1.49
LIMCH1-212ENST00000511424 NDUFB9Q9Y6M9 179 aa5.73□□□□□ -1.49
LIMCH1-212ENST00000511424 ZBBXA8MT70 800 aa5.72□□□□□ -1.49
LIMCH1-212ENST00000511424 PPP1R26Q5T8A7 1209 aaPredicted RBP5.72□□□□□ -1.49
LIMCH1-212ENST00000511424 SNRKQ9NRH2 765 aa5.72□□□□□ -1.49
LIMCH1-212ENST00000511424 MAN1A2O60476 641 aa5.71□□□□□ -1.5
LIMCH1-212ENST00000511424 GJD4Q96KN9 370 aaPredicted RBP5.71□□□□□ -1.5
LIMCH1-212ENST00000511424 FBXO45P0C2W1 286 aa5.7□□□□□ -1.5
LIMCH1-212ENST00000511424 INTS6LQ5JSJ4 861 aaKnown RBP5.7□□□□□ -1.5
LIMCH1-212ENST00000511424 LINC00528Q8N1L1 170 aa5.7□□□□□ -1.5
LIMCH1-212ENST00000511424 MTMR14Q8NCE2 650 aa5.7□□□□□ -1.5
LIMCH1-212ENST00000511424 OCSTAMPQ9BR26 566 aa5.7□□□□□ -1.5
LIMCH1-212ENST00000511424 KLF16Q9BXK1 252 aaPredicted RBP5.7□□□□□ -1.5
LIMCH1-212ENST00000511424 ESF1Q9H501 851 aaKnown RBP5.7□□□□□ -1.5
LIMCH1-212ENST00000511424 CBLBQ13191 982 aa5.69□□□□□ -1.5
LIMCH1-212ENST00000511424 ZNF592Q92610 1267 aa5.69□□□□□ -1.5
LIMCH1-212ENST00000511424 TRIM52Q96A61 297 aa5.69□□□□□ -1.5
LIMCH1-212ENST00000511424 TSEN34Q9BSV6 310 aaKnown RBP5.69□□□□□ -1.5
LIMCH1-212ENST00000511424 SOBPA7XYQ1 873 aa5.68□□□□□ -1.5
LIMCH1-212ENST00000511424 WFS1O76024 890 aa5.68□□□□□ -1.5
LIMCH1-212ENST00000511424 RELBQ01201 579 aa5.68□□□□□ -1.5
LIMCH1-212ENST00000511424 NR1H3Q13133 447 aa5.68□□□□□ -1.5
LIMCH1-212ENST00000511424 MEIOBQ8N635 442 aa5.68□□□□□ -1.5
LIMCH1-212ENST00000511424 SLC16A10Q8TF71 515 aa5.68□□□□□ -1.5
LIMCH1-212ENST00000511424 TMPRSS4Q9NRS4 437 aa5.68□□□□□ -1.5
LIMCH1-212ENST00000511424 ERVH48-1M5A8F1 160 aa5.67□□□□□ -1.5
LIMCH1-212ENST00000511424 ABL2P42684 1182 aa5.67□□□□□ -1.5
LIMCH1-212ENST00000511424 CYLDQ9NQC7 956 aa5.67□□□□□ -1.5
LIMCH1-212ENST00000511424 TBC1D2BQ9UPU7 963 aa5.67□□□□□ -1.5
LIMCH1-212ENST00000511424 TERTO14746 1132 aaKnown RBP5.66□□□□□ -1.5
LIMCH1-212ENST00000511424 GIGYF1O75420 1035 aaPredicted RBP5.66□□□□□ -1.5
LIMCH1-212ENST00000511424 VEGFBP49765 207 aa5.66□□□□□ -1.5
LIMCH1-212ENST00000511424 RNF20Q5VTR2 975 aa5.66□□□□□ -1.5
LIMCH1-212ENST00000511424 TREML4Q6UXN2 200 aa5.66□□□□□ -1.5
LIMCH1-212ENST00000511424 ZNF784Q8NCA9 323 aaPredicted RBP5.66□□□□□ -1.5
LIMCH1-212ENST00000511424 AGBL1Q96MI9 1066 aa5.66□□□□□ -1.5
LIMCH1-212ENST00000511424 POLMQ9NP87 494 aaPredicted RBP5.66□□□□□ -1.5
LIMCH1-212ENST00000511424 NXF1Q9UBU9 619 aaKnown RBP5.66□□□□□ -1.5
LIMCH1-212ENST00000511424 FIGNL2A6NMB9 653 aa5.65□□□□□ -1.5
LIMCH1-212ENST00000511424 TTLL8A6PVC2 850 aa5.65□□□□□ -1.5
LIMCH1-212ENST00000511424 MCCD1P59942 119 aaPredicted RBP5.65□□□□□ -1.5
LIMCH1-212ENST00000511424 SEPT12Q8IYM1 358 aa5.65□□□□□ -1.5
LIMCH1-212ENST00000511424 ZNF395Q9H8N7 513 aaPredicted RBP5.65□□□□□ -1.5
LIMCH1-212ENST00000511424 GDPD2Q9HCC8 539 aa5.65□□□□□ -1.5
LIMCH1-212ENST00000511424 SOCS7O14512 581 aa5.64□□□□□ -1.51
LIMCH1-212ENST00000511424 EIF4G2P78344 907 aaKnown RBP eCLIP5.64□□□□□ -1.51
LIMCH1-212ENST00000511424 PCDHB11Q9Y5F2 797 aa5.64□□□□□ -1.51
LIMCH1-212ENST00000511424 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.63□□□□□ -1.51
LIMCH1-212ENST00000511424 Q6ZVU0 165 aa5.63□□□□□ -1.51
LIMCH1-212ENST00000511424 WWC1Q8IX03 1113 aa5.63□□□□□ -1.51
LIMCH1-212ENST00000511424 INSM2Q96T92 566 aaPredicted RBP5.63□□□□□ -1.51
LIMCH1-212ENST00000511424 ESPNB1AK53 854 aa5.62□□□□□ -1.51
LIMCH1-212ENST00000511424 RAD21O60216 631 aa5.62□□□□□ -1.51
LIMCH1-212ENST00000511424 ADH1AP07327 375 aa5.62□□□□□ -1.51
LIMCH1-212ENST00000511424 VAC14Q08AM6 782 aa5.62□□□□□ -1.51
LIMCH1-212ENST00000511424 NFX1Q12986 1120 aaKnown RBP5.62□□□□□ -1.51
LIMCH1-212ENST00000511424 IRF7Q92985 503 aa5.62□□□□□ -1.51
LIMCH1-212ENST00000511424 DNMT3LQ9UJW3 386 aa5.62□□□□□ -1.51
LIMCH1-212ENST00000511424 ATP5J2-PTCD1G3V325 749 aa5.61□□□□□ -1.51
LIMCH1-212ENST00000511424 MEN1O00255 615 aa5.61□□□□□ -1.51
LIMCH1-212ENST00000511424 SPINT1O43278 529 aa5.61□□□□□ -1.51
LIMCH1-212ENST00000511424 SOS2Q07890 1332 aaPredicted RBP5.61□□□□□ -1.51
LIMCH1-212ENST00000511424 MCM6Q14566 821 aa5.61□□□□□ -1.51
LIMCH1-212ENST00000511424 SLFNL1Q499Z3 407 aa5.61□□□□□ -1.51
LIMCH1-212ENST00000511424 CC2D2BQ6DHV5 1058 aa5.61□□□□□ -1.51
LIMCH1-212ENST00000511424 CCDC125Q86Z20 511 aa5.61□□□□□ -1.51
LIMCH1-212ENST00000511424 LILRA1O75019 489 aa5.6□□□□□ -1.51
LIMCH1-212ENST00000511424 MYCP01106 439 aaPredicted RBP5.6□□□□□ -1.51
LIMCH1-212ENST00000511424 UBTFP17480 764 aaKnown RBP5.6□□□□□ -1.51
LIMCH1-212ENST00000511424 ADD1P35611 737 aaKnown RBP5.6□□□□□ -1.51
LIMCH1-212ENST00000511424 PTGIRP43119 386 aa5.6□□□□□ -1.51
LIMCH1-212ENST00000511424 CTSOP43234 321 aaPredicted RBP5.6□□□□□ -1.51
LIMCH1-212ENST00000511424 SEMA3FQ13275 785 aa5.6□□□□□ -1.51
LIMCH1-212ENST00000511424 WASHC4Q2M389 1173 aa5.59□□□□□ -1.51
LIMCH1-212ENST00000511424 NPAS3Q8IXF0 933 aa5.59□□□□□ -1.51
LIMCH1-212ENST00000511424 NLRP3Q96P20 1036 aa5.59□□□□□ -1.51
LIMCH1-212ENST00000511424 CEP126Q9P2H0 1117 aa5.59□□□□□ -1.51
LIMCH1-212ENST00000511424 H3BM21 787 aa5.58□□□□□ -1.52
LIMCH1-212ENST00000511424 GPR37L1O60883 481 aa5.58□□□□□ -1.52
LIMCH1-212ENST00000511424 PTSQ03393 145 aa5.58□□□□□ -1.52
LIMCH1-212ENST00000511424 TMEM132AQ24JP5 1023 aa5.58□□□□□ -1.52
LIMCH1-212ENST00000511424 SLC27A3Q5K4L6 730 aa5.58□□□□□ -1.52
LIMCH1-212ENST00000511424 CYP2U1Q7Z449 544 aa5.58□□□□□ -1.52
LIMCH1-212ENST00000511424 RNF135Q8IUD6 432 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms