RNA–Protein interactions for RNA: ENST00000508546.5

NEDD9-211, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5

Gene NEDD9, Length 581 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-211ENST00000508546 NUTM2GQ5VZR2 741 aa13.8□□□□□ -0.2
NEDD9-211ENST00000508546 CCDC61Q9Y6R9 512 aa13.8□□□□□ -0.2
NEDD9-211ENST00000508546 AKAP12Q02952 1782 aa13.8□□□□□ -0.2
NEDD9-211ENST00000508546 KIAA1210Q9ULL0 1709 aa13.79□□□□□ -0.2
NEDD9-211ENST00000508546 GPR162Q16538 588 aa13.79□□□□□ -0.2
NEDD9-211ENST00000508546 CDK19Q9BWU1 502 aa13.79□□□□□ -0.2
NEDD9-211ENST00000508546 RAB3GAP2Q9H2M9 1393 aa13.79□□□□□ -0.2
NEDD9-211ENST00000508546 ATP10DQ9P241 1426 aa13.79□□□□□ -0.2
NEDD9-211ENST00000508546 HSPA6P17066 643 aa13.78□□□□□ -0.2
NEDD9-211ENST00000508546 ABTB2Q8N961 1025 aa13.78□□□□□ -0.2
NEDD9-211ENST00000508546 ARXQ96QS3 562 aa13.78□□□□□ -0.2
NEDD9-211ENST00000508546 COL5A2P05997 1499 aaPredicted RBP13.78□□□□□ -0.2
NEDD9-211ENST00000508546 STK32BQ9NY57 414 aa13.77□□□□□ -0.21
NEDD9-211ENST00000508546 CRB1P82279 1406 aa13.76□□□□□ -0.21
NEDD9-211ENST00000508546 GCP02774 474 aa13.76□□□□□ -0.21
NEDD9-211ENST00000508546 SLC15A2Q16348 729 aa13.76□□□□□ -0.21
NEDD9-211ENST00000508546 NLRP13Q86W25 1043 aa13.76□□□□□ -0.21
NEDD9-211ENST00000508546 COL24A1Q17RW2 1714 aa13.76□□□□□ -0.21
NEDD9-211ENST00000508546 BRD4O60885 1362 aaPredicted RBP13.75□□□□□ -0.21
NEDD9-211ENST00000508546 COL18A1P39060 1754 aa13.74□□□□□ -0.21
NEDD9-211ENST00000508546 PELP1Q8IZL8 1130 aaKnown RBP13.74□□□□□ -0.21
NEDD9-211ENST00000508546 AATKQ6ZMQ8 1374 aa13.73□□□□□ -0.21
NEDD9-211ENST00000508546 TXNRD1Q16881 649 aa13.73□□□□□ -0.21
NEDD9-211ENST00000508546 SLIT3O75094 1523 aa13.72□□□□□ -0.21
NEDD9-211ENST00000508546 NHSQ6T4R5 1651 aa13.72□□□□□ -0.21
NEDD9-211ENST00000508546 BCL9O00512 1426 aa13.72□□□□□ -0.21
NEDD9-211ENST00000508546 PPIP5K1Q6PFW1 1433 aa13.72□□□□□ -0.21
NEDD9-211ENST00000508546 RGPD5Q99666 1765 aa13.71□□□□□ -0.21
NEDD9-211ENST00000508546 CAPN15O75808 1086 aa13.71□□□□□ -0.21
NEDD9-211ENST00000508546 KLHL34Q8N239 644 aa13.71□□□□□ -0.21
NEDD9-211ENST00000508546 ADCY9O60503 1353 aa13.71□□□□□ -0.22
NEDD9-211ENST00000508546 QSER1Q2KHR3 1735 aa13.7□□□□□ -0.22
NEDD9-211ENST00000508546 TUBGCP6Q96RT7 1819 aa13.7□□□□□ -0.22
NEDD9-211ENST00000508546 DDB1Q16531 1140 aa13.7□□□□□ -0.22
NEDD9-211ENST00000508546 NLGN2Q8NFZ4 835 aa13.7□□□□□ -0.22
NEDD9-211ENST00000508546 YBX3P16989 372 aaKnown RBP eCLIP13.69□□□□□ -0.22
NEDD9-211ENST00000508546 USP6P35125 1406 aa13.69□□□□□ -0.22
NEDD9-211ENST00000508546 PIK3C2AO00443 1686 aa13.69□□□□□ -0.22
NEDD9-211ENST00000508546 QRICH2Q9H0J4 1663 aa13.69□□□□□ -0.22
NEDD9-211ENST00000508546 WDR17Q8IZU2 1322 aa13.67□□□□□ -0.22
NEDD9-211ENST00000508546 NLRP6P59044 892 aa13.67□□□□□ -0.22
NEDD9-211ENST00000508546 SRPK2P78362 688 aaKnown RBP13.67□□□□□ -0.22
NEDD9-211ENST00000508546 ZNF827Q17R98 1081 aa13.67□□□□□ -0.22
NEDD9-211ENST00000508546 TOM1L2Q6ZVM7 507 aa13.67□□□□□ -0.22
NEDD9-211ENST00000508546 MARCH10Q8NA82 808 aaPredicted RBP13.67□□□□□ -0.22
NEDD9-211ENST00000508546 CDCA7Q9BWT1 371 aaPredicted RBP13.67□□□□□ -0.22
NEDD9-211ENST00000508546 GPBP1L1Q9HC44 474 aaPredicted RBP13.67□□□□□ -0.22
NEDD9-211ENST00000508546 CENPJQ9HC77 1338 aaPredicted RBP13.65□□□□□ -0.22
NEDD9-211ENST00000508546 BTAF1O14981 1849 aa13.65□□□□□ -0.22
NEDD9-211ENST00000508546 NBPF1Q3BBV0 1214 aa13.65□□□□□ -0.22
NEDD9-211ENST00000508546 COL13A1Q5TAT6 717 aaPredicted RBP13.65□□□□□ -0.22
NEDD9-211ENST00000508546 ZNF526Q8TF50 670 aaPredicted RBP13.65□□□□□ -0.22
NEDD9-211ENST00000508546 CABP2Q9NPB3 220 aa13.65□□□□□ -0.22
NEDD9-211ENST00000508546 KAT6BQ8WYB5 2073 aa13.65□□□□□ -0.22
NEDD9-211ENST00000508546 ZBTB7CA1YPR0 619 aa13.64□□□□□ -0.23
NEDD9-211ENST00000508546 AXIN2Q9Y2T1 843 aa13.64□□□□□ -0.23
NEDD9-211ENST00000508546 WDR90Q96KV7 1748 aa13.64□□□□□ -0.23
NEDD9-211ENST00000508546 CPSF1Q10570 1443 aaKnown RBP13.64□□□□□ -0.23
NEDD9-211ENST00000508546 SLC34A2O95436 690 aa13.63□□□□□ -0.23
NEDD9-211ENST00000508546 CARD10Q9BWT7 1032 aa13.63□□□□□ -0.23
NEDD9-211ENST00000508546 CABP1Q9NZU7 370 aa13.63□□□□□ -0.23
NEDD9-211ENST00000508546 TRPM1Q7Z4N2 1603 aa13.63□□□□□ -0.23
NEDD9-211ENST00000508546 ARHGEF25Q86VW2 580 aa13.62□□□□□ -0.23
NEDD9-211ENST00000508546 ABCC6O95255 1503 aa13.62□□□□□ -0.23
NEDD9-211ENST00000508546 GRIN3BO60391 1043 aa13.61□□□□□ -0.23
NEDD9-211ENST00000508546 PRELPP51888 382 aa13.61□□□□□ -0.23
NEDD9-211ENST00000508546 KCNH5Q8NCM2 988 aa13.61□□□□□ -0.23
NEDD9-211ENST00000508546 TNS2Q63HR2 1409 aa13.61□□□□□ -0.23
NEDD9-211ENST00000508546 CCDC7Q96M83 1385 aa13.6□□□□□ -0.23
NEDD9-211ENST00000508546 EXOC5O00471 708 aa13.6□□□□□ -0.23
NEDD9-211ENST00000508546 DNAJC5GQ8N7S2 189 aa13.6□□□□□ -0.23
NEDD9-211ENST00000508546 NFAT5O94916 1531 aa13.59□□□□□ -0.23
NEDD9-211ENST00000508546 POLD1P28340 1107 aa13.59□□□□□ -0.23
NEDD9-211ENST00000508546 ZNF692Q9BU19 519 aaPredicted RBP13.59□□□□□ -0.23
NEDD9-211ENST00000508546 KIF3CO14782 793 aa13.58□□□□□ -0.24
NEDD9-211ENST00000508546 APLP1P51693 650 aa13.58□□□□□ -0.24
NEDD9-211ENST00000508546 PNPLA7Q6ZV29 1317 aa13.58□□□□□ -0.24
NEDD9-211ENST00000508546 TTC21BQ7Z4L5 1316 aa13.58□□□□□ -0.24
NEDD9-211ENST00000508546 EVC2Q86UK5 1308 aa13.58□□□□□ -0.24
NEDD9-211ENST00000508546 TTC21AQ8NDW8 1320 aa13.58□□□□□ -0.24
NEDD9-211ENST00000508546 USP54Q70EL1 1684 aa13.57□□□□□ -0.24
NEDD9-211ENST00000508546 CSB-PGBD3P0DP91 1061 aa13.57□□□□□ -0.24
NEDD9-211ENST00000508546 TNS4Q8IZW8 715 aa13.57□□□□□ -0.24
NEDD9-211ENST00000508546 MON2Q7Z3U7 1717 aa13.56□□□□□ -0.24
NEDD9-211ENST00000508546 LTN1O94822 1766 aa13.56□□□□□ -0.24
NEDD9-211ENST00000508546 LRRC4BQ9NT99 713 aa13.56□□□□□ -0.24
NEDD9-211ENST00000508546 SLC16A10Q8TF71 515 aa13.55□□□□□ -0.24
NEDD9-211ENST00000508546 AKT1S1Q96B36 256 aa13.55□□□□□ -0.24
NEDD9-211ENST00000508546 ACSBG1Q96GR2 724 aa13.54□□□□□ -0.24
NEDD9-211ENST00000508546 SOX12O15370 315 aa13.53□□□□□ -0.24
NEDD9-211ENST00000508546 PCNTO95613 3336 aa13.52□□□□□ -0.24
NEDD9-211ENST00000508546 ERBB3P21860 1342 aa13.52□□□□□ -0.25
NEDD9-211ENST00000508546 CICQ96RK0 1608 aaPredicted RBP13.52□□□□□ -0.25
NEDD9-211ENST00000508546 USP31Q70CQ4 1352 aa13.51□□□□□ -0.25
NEDD9-211ENST00000508546 KTN1Q86UP2 1357 aaKnown RBP13.51□□□□□ -0.25
NEDD9-211ENST00000508546 IL2RBP14784 551 aa13.5□□□□□ -0.25
NEDD9-211ENST00000508546 JMYQ8N9B5 988 aa13.5□□□□□ -0.25
NEDD9-211ENST00000508546 HTRA3P83110 453 aa13.49□□□□□ -0.25
NEDD9-211ENST00000508546 KLRG1Q96E93 195 aa13.49□□□□□ -0.25
NEDD9-211ENST00000508546 LY75O60449 1722 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms