RNA–Protein interactions for RNA: ENST00000504672.5

PDGFC-204, Transcript of platelet derived growth factor C, humanhuman

TSL 5

Gene PDGFC, Length 786 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-204ENST00000504672 ATP7BP35670 1465 aa13.29□□□□□ -0.28
PDGFC-204ENST00000504672 GIGYF1O75420 1035 aaPredicted RBP13.29□□□□□ -0.28
PDGFC-204ENST00000504672 NLRP6P59044 892 aa13.29□□□□□ -0.28
PDGFC-204ENST00000504672 POLR3AO14802 1390 aaPredicted RBP13.29□□□□□ -0.28
PDGFC-204ENST00000504672 CRB1P82279 1406 aa13.29□□□□□ -0.28
PDGFC-204ENST00000504672 COL5A2P05997 1499 aaPredicted RBP13.29□□□□□ -0.28
PDGFC-204ENST00000504672 MYOM1P52179 1685 aa13.28□□□□□ -0.28
PDGFC-204ENST00000504672 SOX12O15370 315 aa13.27□□□□□ -0.29
PDGFC-204ENST00000504672 ACSBG1Q96GR2 724 aa13.27□□□□□ -0.29
PDGFC-204ENST00000504672 PHRF1Q9P1Y6 1649 aaKnown RBP13.27□□□□□ -0.29
PDGFC-204ENST00000504672 SRPK2P78362 688 aaKnown RBP13.26□□□□□ -0.29
PDGFC-204ENST00000504672 CABP2Q9NPB3 220 aa13.26□□□□□ -0.29
PDGFC-204ENST00000504672 CASZ1Q86V15 1759 aa13.25□□□□□ -0.29
PDGFC-204ENST00000504672 EXOC5O00471 708 aa13.25□□□□□ -0.29
PDGFC-204ENST00000504672 CSB-PGBD3P0DP91 1061 aa13.25□□□□□ -0.29
PDGFC-204ENST00000504672 AATKQ6ZMQ8 1374 aa13.24□□□□□ -0.29
PDGFC-204ENST00000504672 CABP1Q9NZU7 370 aa13.24□□□□□ -0.29
PDGFC-204ENST00000504672 GOLGB1Q14789 3259 aaKnown RBP13.24□□□□□ -0.29
PDGFC-204ENST00000504672 PEAK1Q9H792 1746 aa13.23□□□□□ -0.29
PDGFC-204ENST00000504672 ZNF827Q17R98 1081 aa13.23□□□□□ -0.29
PDGFC-204ENST00000504672 LMO7Q8WWI1 1683 aa13.23□□□□□ -0.29
PDGFC-204ENST00000504672 WDR17Q8IZU2 1322 aa13.22□□□□□ -0.29
PDGFC-204ENST00000504672 CDCA7Q9BWT1 371 aaPredicted RBP13.22□□□□□ -0.29
PDGFC-204ENST00000504672 NBPF1Q3BBV0 1214 aa13.21□□□□□ -0.29
PDGFC-204ENST00000504672 NLGN2Q8NFZ4 835 aa13.21□□□□□ -0.29
PDGFC-204ENST00000504672 CARD10Q9BWT7 1032 aa13.21□□□□□ -0.29
PDGFC-204ENST00000504672 PARP4Q9UKK3 1724 aaKnown RBP13.21□□□□□ -0.3
PDGFC-204ENST00000504672 PPIP5K1Q6PFW1 1433 aa13.21□□□□□ -0.3
PDGFC-204ENST00000504672 LRRC4BQ9NT99 713 aa13.2□□□□□ -0.3
PDGFC-204ENST00000504672 KCNQ4P56696 695 aa13.19□□□□□ -0.3
PDGFC-204ENST00000504672 ARHGEF25Q86VW2 580 aa13.19□□□□□ -0.3
PDGFC-204ENST00000504672 LRRC37A3O60309 1634 aa13.17□□□□□ -0.3
PDGFC-204ENST00000504672 BCL9O00512 1426 aa13.17□□□□□ -0.3
PDGFC-204ENST00000504672 YBX3P16989 372 aaKnown RBP eCLIP13.17□□□□□ -0.3
PDGFC-204ENST00000504672 POLD1P28340 1107 aa13.17□□□□□ -0.3
PDGFC-204ENST00000504672 SBF2Q86WG5 1849 aa13.16□□□□□ -0.3
PDGFC-204ENST00000504672 STAC3Q96MF2 364 aa13.16□□□□□ -0.3
PDGFC-204ENST00000504672 MAP3K5Q99683 1374 aa13.16□□□□□ -0.3
PDGFC-204ENST00000504672 ZNF526Q8TF50 670 aaPredicted RBP13.15□□□□□ -0.3
PDGFC-204ENST00000504672 AKT1S1Q96B36 256 aa13.15□□□□□ -0.3
PDGFC-204ENST00000504672 NLRP2Q9NX02 1062 aa13.15□□□□□ -0.3
PDGFC-204ENST00000504672 ITSN1Q15811 1721 aa13.15□□□□□ -0.3
PDGFC-204ENST00000504672 USP6P35125 1406 aa13.14□□□□□ -0.31
PDGFC-204ENST00000504672 TFCP2L1Q9NZI6 479 aa13.14□□□□□ -0.31
PDGFC-204ENST00000504672 RGPD3A6NKT7 1758 aaPredicted RBP13.14□□□□□ -0.31
PDGFC-204ENST00000504672 RGPD4Q7Z3J3 1758 aa13.14□□□□□ -0.31
PDGFC-204ENST00000504672 RAB3GAP2Q9H2M9 1393 aa13.13□□□□□ -0.31
PDGFC-204ENST00000504672 PNPLA7Q6ZV29 1317 aa13.13□□□□□ -0.31
PDGFC-204ENST00000504672 TTC21BQ7Z4L5 1316 aa13.13□□□□□ -0.31
PDGFC-204ENST00000504672 CENPJQ9HC77 1338 aaPredicted RBP13.13□□□□□ -0.31
PDGFC-204ENST00000504672 GRIN3BO60391 1043 aa13.12□□□□□ -0.31
PDGFC-204ENST00000504672 KCNH5Q8NCM2 988 aa13.12□□□□□ -0.31
PDGFC-204ENST00000504672 DDX54Q8TDD1 881 aaKnown RBP13.12□□□□□ -0.31
PDGFC-204ENST00000504672 SLC16A10Q8TF71 515 aa13.12□□□□□ -0.31
PDGFC-204ENST00000504672 CPSF1Q10570 1443 aaKnown RBP13.12□□□□□ -0.31
PDGFC-204ENST00000504672 CHD4Q14839 1912 aa13.11□□□□□ -0.31
PDGFC-204ENST00000504672 ARHGEF28Q8N1W1 1705 aaKnown RBP13.11□□□□□ -0.31
PDGFC-204ENST00000504672 GPBP1L1Q9HC44 474 aaPredicted RBP13.11□□□□□ -0.31
PDGFC-204ENST00000504672 BRD4O60885 1362 aaPredicted RBP13.1□□□□□ -0.31
PDGFC-204ENST00000504672 CCDC7Q96M83 1385 aa13.1□□□□□ -0.31
PDGFC-204ENST00000504672 SLIT3O75094 1523 aa13.1□□□□□ -0.31
PDGFC-204ENST00000504672 TOPAZ1Q8N9V7 1692 aa13.1□□□□□ -0.31
PDGFC-204ENST00000504672 IL2RBP14784 551 aa13.1□□□□□ -0.31
PDGFC-204ENST00000504672 HSPA6P17066 643 aa13.1□□□□□ -0.31
PDGFC-204ENST00000504672 MSL1Q68DK7 614 aa13.1□□□□□ -0.31
PDGFC-204ENST00000504672 SYTL4Q96C24 671 aaPredicted RBP13.1□□□□□ -0.31
PDGFC-204ENST00000504672 ATP10DQ9P241 1426 aa13.1□□□□□ -0.31
PDGFC-204ENST00000504672 WWC3Q9ULE0 1092 aa13.09□□□□□ -0.31
PDGFC-204ENST00000504672 COL18A1P39060 1754 aa13.09□□□□□ -0.31
PDGFC-204ENST00000504672 TNS2Q63HR2 1409 aa13.08□□□□□ -0.32
PDGFC-204ENST00000504672 PRIM1P49642 420 aaKnown RBP13.08□□□□□ -0.32
PDGFC-204ENST00000504672 POTEHQ6S545 545 aa13.08□□□□□ -0.32
PDGFC-204ENST00000504672 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.08□□□□□ -0.32
PDGFC-204ENST00000504672 SHANK3Q9BYB0 1731 aa13.08□□□□□ -0.32
PDGFC-204ENST00000504672 SLC27A3Q5K4L6 730 aa13.07□□□□□ -0.32
PDGFC-204ENST00000504672 COL23A1Q86Y22 540 aaPredicted RBP13.07□□□□□ -0.32
PDGFC-204ENST00000504672 ZNF692Q9BU19 519 aaPredicted RBP13.07□□□□□ -0.32
PDGFC-204ENST00000504672 ANKRD24Q8TF21 1146 aa13.06□□□□□ -0.32
PDGFC-204ENST00000504672 LTV1Q96GA3 475 aaPredicted RBP13.05□□□□□ -0.32
PDGFC-204ENST00000504672 NME9Q86XW9 330 aa13.04□□□□□ -0.32
PDGFC-204ENST00000504672 ERBB3P21860 1342 aa13.04□□□□□ -0.32
PDGFC-204ENST00000504672 EVC2Q86UK5 1308 aa13.04□□□□□ -0.32
PDGFC-204ENST00000504672 PAPPAQ13219 1627 aa13.03□□□□□ -0.32
PDGFC-204ENST00000504672 PIK3C2AO00443 1686 aa13.03□□□□□ -0.32
PDGFC-204ENST00000504672 AKAP12Q02952 1782 aa13.03□□□□□ -0.32
PDGFC-204ENST00000504672 CCNL1Q9UK58 526 aaPredicted RBP13.03□□□□□ -0.32
PDGFC-204ENST00000504672 TTC21AQ8NDW8 1320 aa13.03□□□□□ -0.32
PDGFC-204ENST00000504672 KTN1Q86UP2 1357 aaKnown RBP13.02□□□□□ -0.33
PDGFC-204ENST00000504672 NHSQ6T4R5 1651 aa13.02□□□□□ -0.33
PDGFC-204ENST00000504672 RGPD5Q99666 1765 aa13.02□□□□□ -0.33
PDGFC-204ENST00000504672 CAPN15O75808 1086 aa13□□□□□ -0.33
PDGFC-204ENST00000504672 SMIM5Q71RC9 77 aa13□□□□□ -0.33
PDGFC-204ENST00000504672 CD2APQ9Y5K6 639 aa13□□□□□ -0.33
PDGFC-204ENST00000504672 NFAT5O94916 1531 aa12.99□□□□□ -0.33
PDGFC-204ENST00000504672 BTAF1O14981 1849 aa12.99□□□□□ -0.33
PDGFC-204ENST00000504672 WNK3Q9BYP7 1800 aa12.99□□□□□ -0.33
PDGFC-204ENST00000504672 TRPM1Q7Z4N2 1603 aa12.99□□□□□ -0.33
PDGFC-204ENST00000504672 ABCC6O95255 1503 aa12.98□□□□□ -0.33
PDGFC-204ENST00000504672 KIF3CO14782 793 aa12.98□□□□□ -0.33
PDGFC-204ENST00000504672 DNAJC5GQ8N7S2 189 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms