RNA–Protein interactions for RNA: ENST00000497703.1

GARNL3-221, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 3

Gene GARNL3, Length 304 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-221ENST00000497703 PDE4CQ08493 712 aa13.09□□□□□ -0.31
GARNL3-221ENST00000497703 MAP7D1Q3KQU3 841 aa13.09□□□□□ -0.31
GARNL3-221ENST00000497703 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.08□□□□□ -0.32
GARNL3-221ENST00000497703 SKOR1P84550 965 aa13.08□□□□□ -0.32
GARNL3-221ENST00000497703 RC3H1Q5TC82 1133 aaKnown RBP13.08□□□□□ -0.32
GARNL3-221ENST00000497703 LIAT1Q6ZQX7 453 aa13.07□□□□□ -0.32
GARNL3-221ENST00000497703 VASH1Q7L8A9 365 aaPredicted RBP13.07□□□□□ -0.32
GARNL3-221ENST00000497703 SEPT12Q8IYM1 358 aa13.07□□□□□ -0.32
GARNL3-221ENST00000497703 PLPP7Q8NBV4 271 aa13.07□□□□□ -0.32
GARNL3-221ENST00000497703 VRTNQ9H8Y1 702 aa13.07□□□□□ -0.32
GARNL3-221ENST00000497703 USP17L3A6NCW0 530 aa13.06□□□□□ -0.32
GARNL3-221ENST00000497703 USP17L4A6NCW7 530 aa13.06□□□□□ -0.32
GARNL3-221ENST00000497703 PDIA4P13667 645 aaKnown RBP13.06□□□□□ -0.32
GARNL3-221ENST00000497703 ARID5BQ14865 1188 aa13.06□□□□□ -0.32
GARNL3-221ENST00000497703 EML3Q32P44 896 aa13.06□□□□□ -0.32
GARNL3-221ENST00000497703 USP17L2Q6R6M4 530 aa13.06□□□□□ -0.32
GARNL3-221ENST00000497703 USP17L1Q7RTZ2 530 aa13.06□□□□□ -0.32
GARNL3-221ENST00000497703 PLEKHM2Q8IWE5 1019 aa13.06□□□□□ -0.32
GARNL3-221ENST00000497703 DOLKQ9UPQ8 538 aa13.06□□□□□ -0.32
GARNL3-221ENST00000497703 A0A0G2JS52 829 aa13.05□□□□□ -0.32
GARNL3-221ENST00000497703 GIGYF1O75420 1035 aaPredicted RBP13.05□□□□□ -0.32
GARNL3-221ENST00000497703 MAP4K5Q9Y4K4 846 aa13.05□□□□□ -0.32
GARNL3-221ENST00000497703 KCTD15Q96SI1 283 aaPredicted RBP13.04□□□□□ -0.32
GARNL3-221ENST00000497703 CSB-PGBD3P0DP91 1061 aa13.03□□□□□ -0.32
GARNL3-221ENST00000497703 PHTF2Q8N3S3 785 aa13.03□□□□□ -0.32
GARNL3-221ENST00000497703 SIRT1Q96EB6 747 aa13.03□□□□□ -0.32
GARNL3-221ENST00000497703 ESF1Q9H501 851 aaKnown RBP13.03□□□□□ -0.32
GARNL3-221ENST00000497703 NCOA4Q13772 614 aa13.02□□□□□ -0.33
GARNL3-221ENST00000497703 DEPDC4Q8N2C3 294 aa13.02□□□□□ -0.33
GARNL3-221ENST00000497703 WNT7AO00755 349 aa13.01□□□□□ -0.33
GARNL3-221ENST00000497703 RAB15P59190 212 aa13.01□□□□□ -0.33
GARNL3-221ENST00000497703 ATP5J2-PTCD1G3V325 749 aa13□□□□□ -0.33
GARNL3-221ENST00000497703 OXLD1Q5BKU9 147 aa13□□□□□ -0.33
GARNL3-221ENST00000497703 SPRYD7Q5W111 196 aa13□□□□□ -0.33
GARNL3-221ENST00000497703 TRIM50Q86XT4 487 aa13□□□□□ -0.33
GARNL3-221ENST00000497703 NOD1Q9Y239 953 aa13□□□□□ -0.33
GARNL3-221ENST00000497703 ESPNB1AK53 854 aa12.99□□□□□ -0.33
GARNL3-221ENST00000497703 CDCA8Q53HL2 280 aa12.99□□□□□ -0.33
GARNL3-221ENST00000497703 LARP1Q6PKG0 1096 aaKnown RBP12.99□□□□□ -0.33
GARNL3-221ENST00000497703 MKRN1Q9UHC7 482 aaKnown RBP12.99□□□□□ -0.33
GARNL3-221ENST00000497703 PCDHB11Q9Y5F2 797 aa12.99□□□□□ -0.33
GARNL3-221ENST00000497703 DHX9Q08211 1270 aaKnown RBP12.98□□□□□ -0.33
GARNL3-221ENST00000497703 USP4Q13107 963 aa12.98□□□□□ -0.33
GARNL3-221ENST00000497703 ZNF697Q5TEC3 545 aa12.98□□□□□ -0.33
GARNL3-221ENST00000497703 MPNDQ8N594 471 aa12.98□□□□□ -0.33
GARNL3-221ENST00000497703 RETREG2Q8NC44 543 aa12.98□□□□□ -0.33
GARNL3-221ENST00000497703 CHIC2Q9UKJ5 165 aa12.98□□□□□ -0.33
GARNL3-221ENST00000497703 V9GY48 417 aaPredicted RBP12.98□□□□□ -0.33
GARNL3-221ENST00000497703 ATG7O95352 703 aa12.97□□□□□ -0.33
GARNL3-221ENST00000497703 MYCP01106 439 aaPredicted RBP12.97□□□□□ -0.33
GARNL3-221ENST00000497703 ATP1A2P50993 1020 aa12.97□□□□□ -0.33
GARNL3-221ENST00000497703 ZNF598Q86UK7 904 aaKnown RBP12.97□□□□□ -0.33
GARNL3-221ENST00000497703 CCDC85AQ96PX6 553 aaPredicted RBP12.97□□□□□ -0.33
GARNL3-221ENST00000497703 CDK15Q96Q40 435 aa12.97□□□□□ -0.33
GARNL3-221ENST00000497703 PRKD2Q9BZL6 878 aa12.97□□□□□ -0.33
GARNL3-221ENST00000497703 FSHRP23945 695 aa12.96□□□□□ -0.33
GARNL3-221ENST00000497703 SRPK2P78362 688 aaKnown RBP12.96□□□□□ -0.33
GARNL3-221ENST00000497703 KANK4Q5T7N3 995 aaPredicted RBP12.96□□□□□ -0.33
GARNL3-221ENST00000497703 MRGPRX2Q96LB1 330 aa12.96□□□□□ -0.33
GARNL3-221ENST00000497703 RBM19Q9Y4C8 960 aaKnown RBP12.96□□□□□ -0.33
GARNL3-221ENST00000497703 RASA1P20936 1047 aa12.95□□□□□ -0.34
GARNL3-221ENST00000497703 TRAF7Q6Q0C0 670 aa12.95□□□□□ -0.34
GARNL3-221ENST00000497703 EMID1Q96A84 441 aaPredicted RBP12.95□□□□□ -0.34
GARNL3-221ENST00000497703 TLL2Q9Y6L7 1015 aa12.95□□□□□ -0.34
GARNL3-221ENST00000497703 ADH1CP00326 375 aa12.94□□□□□ -0.34
GARNL3-221ENST00000497703 FOXC1Q12948 553 aa12.94□□□□□ -0.34
GARNL3-221ENST00000497703 NR5A1Q13285 461 aa12.94□□□□□ -0.34
GARNL3-221ENST00000497703 INTS6LQ5JSJ4 861 aaKnown RBP12.94□□□□□ -0.34
GARNL3-221ENST00000497703 USTQ9Y2C2 406 aa12.94□□□□□ -0.34
GARNL3-221ENST00000497703 FAM196BA6NMK8 535 aa12.93□□□□□ -0.34
GARNL3-221ENST00000497703 WASF2Q9Y6W5 498 aa12.92□□□□□ -0.34
GARNL3-221ENST00000497703 SIAH2O43255 324 aa12.91□□□□□ -0.34
GARNL3-221ENST00000497703 PSME1Q06323 249 aa12.91□□□□□ -0.34
GARNL3-221ENST00000497703 ELOAQ14241 798 aaKnown RBP12.91□□□□□ -0.34
GARNL3-221ENST00000497703 TSGA10IPQ3SY00 556 aa12.91□□□□□ -0.34
GARNL3-221ENST00000497703 USP17L15C9J2P7 530 aa12.9□□□□□ -0.34
GARNL3-221ENST00000497703 USP17L10C9JJH3 530 aa12.9□□□□□ -0.34
GARNL3-221ENST00000497703 USP17L13C9JLJ4 530 aa12.9□□□□□ -0.34
GARNL3-221ENST00000497703 USP17L12C9JPN9 530 aa12.9□□□□□ -0.34
GARNL3-221ENST00000497703 USP17L11C9JVI0 530 aa12.9□□□□□ -0.34
GARNL3-221ENST00000497703 USP17L21D6R901 530 aa12.9□□□□□ -0.34
GARNL3-221ENST00000497703 USP17L18D6R9N7 530 aa12.9□□□□□ -0.34
GARNL3-221ENST00000497703 USP17L22D6RA61 530 aa12.9□□□□□ -0.34
GARNL3-221ENST00000497703 USP17L17D6RBQ6 530 aa12.9□□□□□ -0.34
GARNL3-221ENST00000497703 USP17L19D6RCP7 530 aa12.9□□□□□ -0.34
GARNL3-221ENST00000497703 USP17L20D6RJB6 530 aa12.9□□□□□ -0.34
GARNL3-221ENST00000497703 ERVH48-1M5A8F1 160 aa12.9□□□□□ -0.34
GARNL3-221ENST00000497703 ALDH1A1P00352 501 aa12.9□□□□□ -0.34
GARNL3-221ENST00000497703 USP17L24Q0WX57 530 aa12.9□□□□□ -0.34
GARNL3-221ENST00000497703 CCDC116Q8IYX3 515 aa12.9□□□□□ -0.34
GARNL3-221ENST00000497703 OGFOD1Q8N543 542 aa12.9□□□□□ -0.34
GARNL3-221ENST00000497703 GTF2IP78347 998 aa12.89□□□□□ -0.35
GARNL3-221ENST00000497703 TRAIPQ9BWF2 469 aa12.89□□□□□ -0.35
GARNL3-221ENST00000497703 DNAAF2Q9NVR5 837 aaKnown RBP12.89□□□□□ -0.35
GARNL3-221ENST00000497703 NOVA2Q9UNW9 492 aaKnown RBP12.89□□□□□ -0.35
GARNL3-221ENST00000497703 GRM5P41594 1212 aa12.88□□□□□ -0.35
GARNL3-221ENST00000497703 LARGE2Q8N3Y3 721 aa12.88□□□□□ -0.35
GARNL3-221ENST00000497703 SNIP1Q8TAD8 396 aaKnown RBP12.88□□□□□ -0.35
GARNL3-221ENST00000497703 CDCA7Q9BWT1 371 aaPredicted RBP12.88□□□□□ -0.35
GARNL3-221ENST00000497703 PGPEP1Q9NXJ5 209 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms