RNA–Protein interactions for RNA: ENST00000497703.1

GARNL3-221, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 3

Gene GARNL3, Length 304 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-221ENST00000497703 AEBP2Q6ZN18 517 aaPredicted RBP32.21■■■□□ 2.75
GARNL3-221ENST00000497703 CHIC1Q5VXU3 224 aa32.06■■■□□ 2.72
GARNL3-221ENST00000497703 PHF23Q9BUL5 403 aaPredicted RBP28.14■■■□□ 2.1
GARNL3-221ENST00000497703 SENP3Q9H4L4 574 aaPredicted RBP27.47■■□□□ 1.99
GARNL3-221ENST00000497703 PLPPR3Q6T4P5 718 aa26.36■■□□□ 1.81
GARNL3-221ENST00000497703 FOXD1Q16676 465 aa25.29■■□□□ 1.64
GARNL3-221ENST00000497703 ADRA2BP18089 450 aa24.74■■□□□ 1.55
GARNL3-221ENST00000497703 PPP6R1Q9UPN7 881 aa24.66■■□□□ 1.54
GARNL3-221ENST00000497703 PIAS4Q8N2W9 510 aaPredicted RBP24.1■■□□□ 1.45
GARNL3-221ENST00000497703 MSH5O43196 834 aa23.3■■□□□ 1.32
GARNL3-221ENST00000497703 PPP4R3CPQ6ZMV5 832 aa23.22■■□□□ 1.31
GARNL3-221ENST00000497703 KCNA4P22459 653 aa23.19■■□□□ 1.3
GARNL3-221ENST00000497703 NCBP3Q53F19 620 aaKnown RBP22.91■■□□□ 1.26
GARNL3-221ENST00000497703 SCAF1Q9H7N4 1312 aaKnown RBP22.86■■□□□ 1.25
GARNL3-221ENST00000497703 CNKSR2Q8WXI2 1034 aa22.51■■□□□ 1.19
GARNL3-221ENST00000497703 NPM3O75607 178 aaKnown RBP22.39■■□□□ 1.17
GARNL3-221ENST00000497703 SLC4A1APQ9BWU0 796 aaKnown RBP22.28■■□□□ 1.16
GARNL3-221ENST00000497703 MAPK8IP2Q13387 824 aaPredicted RBP22.25■■□□□ 1.15
GARNL3-221ENST00000497703 EHMT2Q96KQ7 1210 aa22.2■■□□□ 1.14
GARNL3-221ENST00000497703 RNF216Q9NWF9 866 aaPredicted RBP21.94■■□□□ 1.1
GARNL3-221ENST00000497703 DMRT2Q9Y5R5 561 aa21.94■■□□□ 1.1
GARNL3-221ENST00000497703 HOXD11P31277 338 aaPredicted RBP21.65■■□□□ 1.06
GARNL3-221ENST00000497703 DNAJC5BQ9UF47 199 aa21.65■■□□□ 1.06
GARNL3-221ENST00000497703 CSRNP3Q8WYN3 585 aa21.61■■□□□ 1.05
GARNL3-221ENST00000497703 FOXD4L1Q9NU39 408 aa21.3■■□□□ 1
GARNL3-221ENST00000497703 ZBTB22O15209 634 aa21.26■□□□□ 0.99
GARNL3-221ENST00000497703 DCAF8L1A6NGE4 600 aa21.1■□□□□ 0.97
GARNL3-221ENST00000497703 SLC4A2P04920 1241 aa20.95■□□□□ 0.94
GARNL3-221ENST00000497703 MYCNP04198 464 aaPredicted RBP20.78■□□□□ 0.92
GARNL3-221ENST00000497703 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.77■□□□□ 0.92
GARNL3-221ENST00000497703 ATXN8OSP0DMR3 200 aa20.54■□□□□ 0.88
GARNL3-221ENST00000497703 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.49■□□□□ 0.87
GARNL3-221ENST00000497703 HNRNPUL2Q1KMD3 747 aaKnown RBP20.49■□□□□ 0.87
GARNL3-221ENST00000497703 SAMD1Q6SPF0 538 aaPredicted RBP20.39■□□□□ 0.85
GARNL3-221ENST00000497703 U3KPZ7 1027 aaPredicted RBP20.34■□□□□ 0.85
GARNL3-221ENST00000497703 APLP2Q06481 763 aa20.21■□□□□ 0.83
GARNL3-221ENST00000497703 POTEDQ86YR6 584 aa20.21■□□□□ 0.83
GARNL3-221ENST00000497703 ATF5Q9Y2D1 282 aaPredicted RBP20■□□□□ 0.79
GARNL3-221ENST00000497703 RNF39Q9H2S5 420 aa19.9■□□□□ 0.78
GARNL3-221ENST00000497703 C1QBPQ07021 282 aaKnown RBP19.79■□□□□ 0.76
GARNL3-221ENST00000497703 ZNF219Q9P2Y4 722 aaPredicted RBP19.79■□□□□ 0.76
GARNL3-221ENST00000497703 CAPN15O75808 1086 aa19.67■□□□□ 0.74
GARNL3-221ENST00000497703 TRHP20396 242 aaPredicted RBP19.67■□□□□ 0.74
GARNL3-221ENST00000497703 SPINK5Q9NQ38 1064 aaPredicted RBP19.62■□□□□ 0.73
GARNL3-221ENST00000497703 FKBP8Q14318 412 aa19.61■□□□□ 0.73
GARNL3-221ENST00000497703 POLA2Q14181 598 aa19.42■□□□□ 0.7
GARNL3-221ENST00000497703 FBLN2P98095 1184 aa19.4■□□□□ 0.7
GARNL3-221ENST00000497703 ZBTB12Q9Y330 459 aaPredicted RBP19.28■□□□□ 0.68
GARNL3-221ENST00000497703 ABCB7O75027 752 aa19.25■□□□□ 0.67
GARNL3-221ENST00000497703 MKRN4PQ13434 485 aaPredicted RBP19.17■□□□□ 0.66
GARNL3-221ENST00000497703 SPDYE4A6NLX3 237 aa19.14■□□□□ 0.65
GARNL3-221ENST00000497703 CACNB1Q02641 598 aaPredicted RBP19.13■□□□□ 0.65
GARNL3-221ENST00000497703 DSG3P32926 999 aa19.11■□□□□ 0.65
GARNL3-221ENST00000497703 FBXO3Q9UK99 471 aa18.91■□□□□ 0.62
GARNL3-221ENST00000497703 AMER1Q5JTC6 1135 aaPredicted RBP18.82■□□□□ 0.6
GARNL3-221ENST00000497703 PROM2Q8N271 834 aa18.76■□□□□ 0.59
GARNL3-221ENST00000497703 OSCARQ8IYS5 282 aa18.73■□□□□ 0.59
GARNL3-221ENST00000497703 ZNF692Q9BU19 519 aaPredicted RBP18.73■□□□□ 0.59
GARNL3-221ENST00000497703 SPDYE2BA6NHP3 402 aa18.71■□□□□ 0.59
GARNL3-221ENST00000497703 SPDYE6P0CI01 402 aa18.71■□□□□ 0.59
GARNL3-221ENST00000497703 SPDYE2Q495Y8 402 aa18.71■□□□□ 0.59
GARNL3-221ENST00000497703 RTN4Q9NQC3 1192 aaKnown RBP18.63■□□□□ 0.57
GARNL3-221ENST00000497703 SSUH2Q9Y2M2 353 aa18.53■□□□□ 0.56
GARNL3-221ENST00000497703 VASPP50552 380 aaPredicted RBP18.51■□□□□ 0.55
GARNL3-221ENST00000497703 PABPN1Q86U42 306 aaKnown RBP eCLIP18.46■□□□□ 0.55
GARNL3-221ENST00000497703 STAG3Q9UJ98 1225 aa18.4■□□□□ 0.54
GARNL3-221ENST00000497703 RBM42Q9BTD8 480 aaKnown RBP18.36■□□□□ 0.53
GARNL3-221ENST00000497703 IFNLR1Q8IU57 520 aaPredicted RBP18.22■□□□□ 0.51
GARNL3-221ENST00000497703 PLCD3Q8N3E9 789 aa18.21■□□□□ 0.51
GARNL3-221ENST00000497703 KLHL34Q8N239 644 aa18.19■□□□□ 0.5
GARNL3-221ENST00000497703 PLEKHG5O94827 1062 aa18.18■□□□□ 0.5
GARNL3-221ENST00000497703 AKT1S1Q96B36 256 aa18.17■□□□□ 0.5
GARNL3-221ENST00000497703 MIER1Q8N108 512 aa18.15■□□□□ 0.5
GARNL3-221ENST00000497703 SPDYE1Q8NFV5 336 aaPredicted RBP18.08■□□□□ 0.48
GARNL3-221ENST00000497703 SPOCK2Q92563 424 aa18.05■□□□□ 0.48
GARNL3-221ENST00000497703 ZBTB47Q9UFB7 747 aaPredicted RBP18.04■□□□□ 0.48
GARNL3-221ENST00000497703 CLEC11AQ9Y240 323 aa17.97■□□□□ 0.47
GARNL3-221ENST00000497703 REM2Q8IYK8 340 aaPredicted RBP17.94■□□□□ 0.46
GARNL3-221ENST00000497703 PRR29P0C7W0 189 aa17.89■□□□□ 0.45
GARNL3-221ENST00000497703 DCAF8L2P0C7V8 631 aa17.8■□□□□ 0.44
GARNL3-221ENST00000497703 PKD2Q13563 968 aa17.78■□□□□ 0.44
GARNL3-221ENST00000497703 SLC24A1O60721 1099 aa17.74■□□□□ 0.43
GARNL3-221ENST00000497703 ECM2O94769 699 aaPredicted RBP17.72■□□□□ 0.43
GARNL3-221ENST00000497703 PITPNM1O00562 1244 aa17.71■□□□□ 0.43
GARNL3-221ENST00000497703 CIZ1Q9ULV3 898 aaPredicted RBP17.71■□□□□ 0.43
GARNL3-221ENST00000497703 CREBZFQ9NS37 354 aa17.63■□□□□ 0.41
GARNL3-221ENST00000497703 GSE1Q14687 1217 aa17.6■□□□□ 0.41
GARNL3-221ENST00000497703 TRIM41Q8WV44 630 aa17.59■□□□□ 0.41
GARNL3-221ENST00000497703 NPM1P06748 294 aaKnown RBP eCLIP17.54■□□□□ 0.4
GARNL3-221ENST00000497703 DCAF8Q5TAQ9 597 aa17.51■□□□□ 0.39
GARNL3-221ENST00000497703 FAM212AQ96EL1 285 aa17.51■□□□□ 0.39
GARNL3-221ENST00000497703 NUBP1P53384 320 aa17.49■□□□□ 0.39
GARNL3-221ENST00000497703 MNX1P50219 401 aaPredicted RBP17.45■□□□□ 0.38
GARNL3-221ENST00000497703 RGL2O15211 777 aa17.42■□□□□ 0.38
GARNL3-221ENST00000497703 CHADLQ6NUI6 762 aa17.36■□□□□ 0.37
GARNL3-221ENST00000497703 PLCB2Q00722 1185 aa17.34■□□□□ 0.37
GARNL3-221ENST00000497703 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.34■□□□□ 0.37
GARNL3-221ENST00000497703 TAOK2Q9UL54 1235 aa17.34■□□□□ 0.37
GARNL3-221ENST00000497703 PRKAR2AP13861 404 aaKnown RBP17.32■□□□□ 0.36
GARNL3-221ENST00000497703 RASEFQ8IZ41 740 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms