RNA–Protein interactions for RNA: ENST00000494012.1

MACF1-222, Transcript of microtubule-actin crosslinking factor 1, human

TSL 4

Gene MACF1, Length 667 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MACF1-222	ENST00000494012	COL5A2	P05997	1499 aa	Predicted RBP	13.72	□□□□□ -0.21
MACF1-222	ENST00000494012	GLI3	P10071	1580 aa		13.71	□□□□□ -0.21
MACF1-222	ENST00000494012	KNSTRN	Q9Y448	316 aa		13.71	□□□□□ -0.21
MACF1-222	ENST00000494012	FAM208A	Q9UK61	1670 aa	Known RBP	13.71	□□□□□ -0.21
MACF1-222	ENST00000494012	GJD4	Q96KN9	370 aa	Predicted RBP	13.7	□□□□□ -0.22
MACF1-222	ENST00000494012	CCDC9	Q9Y3X0	531 aa	Known RBP	13.7	□□□□□ -0.22
MACF1-222	ENST00000494012	EVA1C	P58658	441 aa		13.69	□□□□□ -0.22
MACF1-222	ENST00000494012	BLM	P54132	1417 aa	Predicted RBP	13.69	□□□□□ -0.22
MACF1-222	ENST00000494012	RTL1	A6NKG5	1358 aa		13.69	□□□□□ -0.22
MACF1-222	ENST00000494012	STRN4	Q9NRL3	753 aa		13.68	□□□□□ -0.22
MACF1-222	ENST00000494012	MAP2	P11137	1827 aa	Known RBP	13.68	□□□□□ -0.22
MACF1-222	ENST00000494012	WNK3	Q9BYP7	1800 aa		13.68	□□□□□ -0.22
MACF1-222	ENST00000494012	KIF24	Q5T7B8	1368 aa		13.68	□□□□□ -0.22
MACF1-222	ENST00000494012	SPATA31A5	Q5VU36	1347 aa		13.67	□□□□□ -0.22
MACF1-222	ENST00000494012	SPATA31A7	Q8IWB4	1347 aa		13.67	□□□□□ -0.22
MACF1-222	ENST00000494012	RGS12	O14924	1447 aa		13.67	□□□□□ -0.22
MACF1-222	ENST00000494012	CRB1	P82279	1406 aa		13.67	□□□□□ -0.22
MACF1-222	ENST00000494012	MAP3K19	Q56UN5	1328 aa		13.66	□□□□□ -0.22
MACF1-222	ENST00000494012	THSD7A	Q9UPZ6	1657 aa		13.66	□□□□□ -0.22
MACF1-222	ENST00000494012	SPATA31A1	Q5TZJ5	1347 aa		13.65	□□□□□ -0.22
MACF1-222	ENST00000494012	WDR17	Q8IZU2	1322 aa		13.65	□□□□□ -0.22
MACF1-222	ENST00000494012	PEAK1	Q9H792	1746 aa		13.65	□□□□□ -0.22
MACF1-222	ENST00000494012	AXIN2	Q9Y2T1	843 aa		13.65	□□□□□ -0.22
MACF1-222	ENST00000494012	FLT4	P35916	1363 aa		13.64	□□□□□ -0.23
MACF1-222	ENST00000494012	NPC1L1	Q9UHC9	1359 aa		13.64	□□□□□ -0.23
MACF1-222	ENST00000494012	PER1	O15534	1290 aa	Predicted RBP	13.64	□□□□□ -0.23
MACF1-222	ENST00000494012	CSB-PGBD3	P0DP91	1061 aa		13.64	□□□□□ -0.23
MACF1-222	ENST00000494012	AMPH	P49418	695 aa		13.64	□□□□□ -0.23
MACF1-222	ENST00000494012	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.64	□□□□□ -0.23
MACF1-222	ENST00000494012	LARP1	Q6PKG0	1096 aa	Known RBP	13.64	□□□□□ -0.23
MACF1-222	ENST00000494012	IP6K1	Q92551	441 aa		13.64	□□□□□ -0.23
MACF1-222	ENST00000494012	BRWD3	Q6RI45	1802 aa		13.64	□□□□□ -0.23
MACF1-222	ENST00000494012	SMG6	Q86US8	1419 aa	Known RBP	13.64	□□□□□ -0.23
MACF1-222	ENST00000494012	ERBB3	P21860	1342 aa		13.64	□□□□□ -0.23
MACF1-222	ENST00000494012	RRS1	Q15050	365 aa	Known RBP	13.63	□□□□□ -0.23
MACF1-222	ENST00000494012	TOM1L2	Q6ZVM7	507 aa		13.63	□□□□□ -0.23
MACF1-222	ENST00000494012	MORC1	Q86VD1	984 aa		13.63	□□□□□ -0.23
MACF1-222	ENST00000494012	PARP4	Q9UKK3	1724 aa	Known RBP	13.63	□□□□□ -0.23
MACF1-222	ENST00000494012	HOXC9	P31274	260 aa		13.62	□□□□□ -0.23
MACF1-222	ENST00000494012	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.62	□□□□□ -0.23
MACF1-222	ENST00000494012	THRAP3	Q9Y2W1	955 aa	Known RBP	13.62	□□□□□ -0.23
MACF1-222	ENST00000494012	INSR	P06213	1382 aa		13.61	□□□□□ -0.23
MACF1-222	ENST00000494012		A0A0G2JS52	829 aa		13.61	□□□□□ -0.23
MACF1-222	ENST00000494012	ONECUT3	O60422	494 aa	Predicted RBP	13.61	□□□□□ -0.23
MACF1-222	ENST00000494012	MYT1	Q01538	1121 aa		13.61	□□□□□ -0.23
MACF1-222	ENST00000494012	FAM98C	Q17RN3	349 aa	Known RBP	13.61	□□□□□ -0.23
MACF1-222	ENST00000494012	BARGIN	Q6ZT62	677 aa		13.61	□□□□□ -0.23
MACF1-222	ENST00000494012	TCP11L2	Q8N4U5	519 aa		13.61	□□□□□ -0.23
MACF1-222	ENST00000494012	ANKRD24	Q8TF21	1146 aa		13.61	□□□□□ -0.23
MACF1-222	ENST00000494012	USP35	Q9P2H5	1018 aa		13.61	□□□□□ -0.23
MACF1-222	ENST00000494012	FBLN1	P23142	703 aa		13.6	□□□□□ -0.23
MACF1-222	ENST00000494012	TNNT2	P45379	298 aa	Predicted RBP	13.6	□□□□□ -0.23
MACF1-222	ENST00000494012	CARD10	Q9BWT7	1032 aa		13.6	□□□□□ -0.23
MACF1-222	ENST00000494012	RGPD2	P0DJD1	1756 aa		13.6	□□□□□ -0.23
MACF1-222	ENST00000494012	LRRC37A3	O60309	1634 aa		13.6	□□□□□ -0.23
MACF1-222	ENST00000494012	CC2D1B	Q5T0F9	858 aa	Known RBP	13.59	□□□□□ -0.23
MACF1-222	ENST00000494012	SEPT12	Q8IYM1	358 aa		13.59	□□□□□ -0.23
MACF1-222	ENST00000494012	EMILIN1	Q9Y6C2	1016 aa		13.59	□□□□□ -0.23
MACF1-222	ENST00000494012	PPM1G	O15355	546 aa	Predicted RBP	13.58	□□□□□ -0.24
MACF1-222	ENST00000494012	CDCA7	Q9BWT1	371 aa	Predicted RBP	13.58	□□□□□ -0.24
MACF1-222	ENST00000494012	NLRP2	Q9NX02	1062 aa		13.58	□□□□□ -0.24
MACF1-222	ENST00000494012	POLK	Q9UBT6	870 aa		13.58	□□□□□ -0.24
MACF1-222	ENST00000494012	LTV1	Q96GA3	475 aa	Predicted RBP	13.57	□□□□□ -0.24
MACF1-222	ENST00000494012	HSP90AB2P	Q58FF8	381 aa		13.56	□□□□□ -0.24
MACF1-222	ENST00000494012	KRT27	Q7Z3Y8	459 aa		13.55	□□□□□ -0.24
MACF1-222	ENST00000494012	DISP2	A7MBM2	1401 aa		13.55	□□□□□ -0.24
MACF1-222	ENST00000494012	DDX10	Q13206	875 aa	Known RBP	13.54	□□□□□ -0.24
MACF1-222	ENST00000494012	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.53	□□□□□ -0.24
MACF1-222	ENST00000494012	TNS2	Q63HR2	1409 aa		13.53	□□□□□ -0.24
MACF1-222	ENST00000494012	IL2RB	P14784	551 aa		13.52	□□□□□ -0.25
MACF1-222	ENST00000494012	PDE3B	Q13370	1112 aa		13.52	□□□□□ -0.25
MACF1-222	ENST00000494012	CNGB1	Q14028	1251 aa	Predicted RBP	13.52	□□□□□ -0.25
MACF1-222	ENST00000494012	DDB1	Q16531	1140 aa		13.52	□□□□□ -0.25
MACF1-222	ENST00000494012	RGPD1	P0DJD0	1748 aa		13.51	□□□□□ -0.25
MACF1-222	ENST00000494012	NCAPD2	Q15021	1401 aa		13.51	□□□□□ -0.25
MACF1-222	ENST00000494012	PARD3	Q8TEW0	1356 aa		13.5	□□□□□ -0.25
MACF1-222	ENST00000494012	MTHFS	P49914	203 aa		13.5	□□□□□ -0.25
MACF1-222	ENST00000494012	EIF4A2	Q14240	407 aa	Known RBP	13.5	□□□□□ -0.25
MACF1-222	ENST00000494012	NBPF6	Q5VWK0	638 aa		13.5	□□□□□ -0.25
MACF1-222	ENST00000494012	NBPF4	Q96M43	638 aa		13.5	□□□□□ -0.25
MACF1-222	ENST00000494012	PKD1L3	Q7Z443	1732 aa		13.5	□□□□□ -0.25
MACF1-222	ENST00000494012	OVOS2	A0A0G2JMS6	1433 aa		13.49	□□□□□ -0.25
MACF1-222	ENST00000494012	EXOC5	O00471	708 aa		13.49	□□□□□ -0.25
MACF1-222	ENST00000494012	RAPGEF4	Q8WZA2	1011 aa		13.49	□□□□□ -0.25
MACF1-222	ENST00000494012	SHANK3	Q9BYB0	1731 aa		13.49	□□□□□ -0.25
MACF1-222	ENST00000494012	MEGF6	O75095	1541 aa		13.49	□□□□□ -0.25
MACF1-222	ENST00000494012	USHBP1	Q8N6Y0	703 aa		13.48	□□□□□ -0.25
MACF1-222	ENST00000494012	PLEKHG2	Q9H7P9	1386 aa		13.47	□□□□□ -0.25
MACF1-222	ENST00000494012	IGSF1	Q8N6C5	1336 aa		13.47	□□□□□ -0.25
MACF1-222	ENST00000494012	PPP2R1A	P30153	589 aa		13.47	□□□□□ -0.25
MACF1-222	ENST00000494012	FAM196A	Q6ZSG2	479 aa		13.47	□□□□□ -0.25
MACF1-222	ENST00000494012	CFAP53	Q96M91	514 aa		13.47	□□□□□ -0.25
MACF1-222	ENST00000494012	EYA1	Q99502	592 aa		13.47	□□□□□ -0.25
MACF1-222	ENST00000494012	SBF2	Q86WG5	1849 aa		13.47	□□□□□ -0.25
MACF1-222	ENST00000494012	EP400	Q96L91	3159 aa		13.47	□□□□□ -0.25
MACF1-222	ENST00000494012	COL3A1	P02461	1466 aa	Predicted RBP	13.47	□□□□□ -0.25
MACF1-222	ENST00000494012	TNS1	Q9HBL0	1735 aa	Known RBP	13.47	□□□□□ -0.25
MACF1-222	ENST00000494012	TAT	P17735	454 aa	Predicted RBP	13.46	□□□□□ -0.25
MACF1-222	ENST00000494012	RALBP1	Q15311	655 aa		13.46	□□□□□ -0.25
MACF1-222	ENST00000494012	CCDC125	Q86Z20	511 aa		13.46	□□□□□ -0.25

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