RNA–Protein interactions for RNA: ENST00000491747.6

BRCA1-219, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5 BASIC

Gene BRCA1, Length 2,379 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-219ENST00000491747 KCNH5Q8NCM2 988 aa12.9□□□□□ -0.34
BRCA1-219ENST00000491747 AXIN2Q9Y2T1 843 aa12.9□□□□□ -0.34
BRCA1-219ENST00000491747 NSD3Q9BZ95 1437 aa12.89□□□□□ -0.35
BRCA1-219ENST00000491747 FBLN1P23142 703 aa12.89□□□□□ -0.35
BRCA1-219ENST00000491747 STRN4Q9NRL3 753 aa12.89□□□□□ -0.35
BRCA1-219ENST00000491747 CCDC9Q9Y3X0 531 aaKnown RBP12.89□□□□□ -0.35
BRCA1-219ENST00000491747 KIF7Q2M1P5 1343 aa12.89□□□□□ -0.35
BRCA1-219ENST00000491747 AATKQ6ZMQ8 1374 aa12.89□□□□□ -0.35
BRCA1-219ENST00000491747 GGNBP2Q9H3C7 697 aa12.88□□□□□ -0.35
BRCA1-219ENST00000491747 COL5A2P05997 1499 aaPredicted RBP12.88□□□□□ -0.35
BRCA1-219ENST00000491747 SPATA31A5Q5VU36 1347 aa12.88□□□□□ -0.35
BRCA1-219ENST00000491747 SPATA31A7Q8IWB4 1347 aa12.88□□□□□ -0.35
BRCA1-219ENST00000491747 LARP1Q6PKG0 1096 aaKnown RBP12.87□□□□□ -0.35
BRCA1-219ENST00000491747 PANK3Q9H999 370 aa12.87□□□□□ -0.35
BRCA1-219ENST00000491747 EVA1CP58658 441 aa12.86□□□□□ -0.35
BRCA1-219ENST00000491747 COG3Q96JB2 828 aa12.86□□□□□ -0.35
BRCA1-219ENST00000491747 SPATA31A1Q5TZJ5 1347 aa12.86□□□□□ -0.35
BRCA1-219ENST00000491747 ONECUT3O60422 494 aaPredicted RBP12.86□□□□□ -0.35
BRCA1-219ENST00000491747 ANKRD26Q9UPS8 1709 aa12.85□□□□□ -0.35
BRCA1-219ENST00000491747 FAM98CQ17RN3 349 aaKnown RBP12.85□□□□□ -0.35
BRCA1-219ENST00000491747 THSD7AQ9UPZ6 1657 aa12.85□□□□□ -0.35
BRCA1-219ENST00000491747 WASHC2AQ641Q2 1341 aa12.84□□□□□ -0.35
BRCA1-219ENST00000491747 SEPT12Q8IYM1 358 aa12.84□□□□□ -0.35
BRCA1-219ENST00000491747 USP35Q9P2H5 1018 aa12.84□□□□□ -0.35
BRCA1-219ENST00000491747 ABCC6O95255 1503 aa12.84□□□□□ -0.35
BRCA1-219ENST00000491747 CCDC7Q96M83 1385 aa12.83□□□□□ -0.36
BRCA1-219ENST00000491747 PEAK1Q9H792 1746 aa12.83□□□□□ -0.36
BRCA1-219ENST00000491747 WNK3Q9BYP7 1800 aa12.83□□□□□ -0.36
BRCA1-219ENST00000491747 MAP2P11137 1827 aaKnown RBP12.82□□□□□ -0.36
BRCA1-219ENST00000491747 MAP3K19Q56UN5 1328 aa12.82□□□□□ -0.36
BRCA1-219ENST00000491747 CRB1P82279 1406 aa12.82□□□□□ -0.36
BRCA1-219ENST00000491747 RGPD2P0DJD1 1756 aa12.82□□□□□ -0.36
BRCA1-219ENST00000491747 RRS1Q15050 365 aaKnown RBP12.81□□□□□ -0.36
BRCA1-219ENST00000491747 CGNL1Q0VF96 1302 aa12.81□□□□□ -0.36
BRCA1-219ENST00000491747 WDR17Q8IZU2 1322 aa12.81□□□□□ -0.36
BRCA1-219ENST00000491747 TOM1L2Q6ZVM7 507 aa12.8□□□□□ -0.36
BRCA1-219ENST00000491747 TCP11L2Q8N4U5 519 aa12.8□□□□□ -0.36
BRCA1-219ENST00000491747 IP6K1Q92551 441 aa12.8□□□□□ -0.36
BRCA1-219ENST00000491747 UPF1Q92900 1129 aaKnown RBP eCLIP12.8□□□□□ -0.36
BRCA1-219ENST00000491747 EP400Q96L91 3159 aa12.79□□□□□ -0.36
BRCA1-219ENST00000491747 A0A0G2JS52 829 aa12.79□□□□□ -0.36
BRCA1-219ENST00000491747 HOXC9P31274 260 aa12.79□□□□□ -0.36
BRCA1-219ENST00000491747 BARGINQ6ZT62 677 aa12.79□□□□□ -0.36
BRCA1-219ENST00000491747 PARP4Q9UKK3 1724 aaKnown RBP12.79□□□□□ -0.36
BRCA1-219ENST00000491747 ERBB3P21860 1342 aa12.79□□□□□ -0.36
BRCA1-219ENST00000491747 PER1O15534 1290 aaPredicted RBP12.78□□□□□ -0.36
BRCA1-219ENST00000491747 CSB-PGBD3P0DP91 1061 aa12.78□□□□□ -0.36
BRCA1-219ENST00000491747 ANKRD24Q8TF21 1146 aa12.78□□□□□ -0.36
BRCA1-219ENST00000491747 BLMP54132 1417 aaPredicted RBP12.78□□□□□ -0.36
BRCA1-219ENST00000491747 FAM182BQ5T319 152 aa12.78□□□□□ -0.36
BRCA1-219ENST00000491747 THRAP3Q9Y2W1 955 aaKnown RBP12.78□□□□□ -0.36
BRCA1-219ENST00000491747 AMPHP49418 695 aa12.77□□□□□ -0.36
BRCA1-219ENST00000491747 KRT27Q7Z3Y8 459 aa12.77□□□□□ -0.36
BRCA1-219ENST00000491747 EMILIN1Q9Y6C2 1016 aa12.77□□□□□ -0.36
BRCA1-219ENST00000491747 LRRC37A3O60309 1634 aa12.77□□□□□ -0.36
BRCA1-219ENST00000491747 FAM208AQ9UK61 1670 aaKnown RBP12.77□□□□□ -0.37
BRCA1-219ENST00000491747 LTV1Q96GA3 475 aaPredicted RBP12.77□□□□□ -0.37
BRCA1-219ENST00000491747 CARD10Q9BWT7 1032 aa12.77□□□□□ -0.37
BRCA1-219ENST00000491747 TSHZ2Q9NRE2 1034 aa12.77□□□□□ -0.37
BRCA1-219ENST00000491747 TNNT2P45379 298 aaPredicted RBP12.76□□□□□ -0.37
BRCA1-219ENST00000491747 AMER1Q5JTC6 1135 aaPredicted RBP12.76□□□□□ -0.37
BRCA1-219ENST00000491747 KNSTRNQ9Y448 316 aa12.76□□□□□ -0.37
BRCA1-219ENST00000491747 RTL1A6NKG5 1358 aa12.75□□□□□ -0.37
BRCA1-219ENST00000491747 DISP2A7MBM2 1401 aa12.75□□□□□ -0.37
BRCA1-219ENST00000491747 HSP90AB2PQ58FF8 381 aa12.75□□□□□ -0.37
BRCA1-219ENST00000491747 NLRP2Q9NX02 1062 aa12.75□□□□□ -0.37
BRCA1-219ENST00000491747 POLKQ9UBT6 870 aa12.74□□□□□ -0.37
BRCA1-219ENST00000491747 NSD2O96028 1365 aa12.74□□□□□ -0.37
BRCA1-219ENST00000491747 INSRP06213 1382 aa12.73□□□□□ -0.37
BRCA1-219ENST00000491747 FLT4P35916 1363 aa12.73□□□□□ -0.37
BRCA1-219ENST00000491747 KIF24Q5T7B8 1368 aa12.72□□□□□ -0.37
BRCA1-219ENST00000491747 PPM1GO15355 546 aaPredicted RBP12.72□□□□□ -0.37
BRCA1-219ENST00000491747 DDX10Q13206 875 aaKnown RBP12.72□□□□□ -0.37
BRCA1-219ENST00000491747 MORC1Q86VD1 984 aa12.72□□□□□ -0.37
BRCA1-219ENST00000491747 CC2D1BQ5T0F9 858 aaKnown RBP12.71□□□□□ -0.37
BRCA1-219ENST00000491747 NBPF6Q5VWK0 638 aa12.71□□□□□ -0.37
BRCA1-219ENST00000491747 NBPF4Q96M43 638 aa12.71□□□□□ -0.37
BRCA1-219ENST00000491747 SBF2Q86WG5 1849 aa12.71□□□□□ -0.38
BRCA1-219ENST00000491747 PDE3BQ13370 1112 aa12.7□□□□□ -0.38
BRCA1-219ENST00000491747 DDB1Q16531 1140 aa12.7□□□□□ -0.38
BRCA1-219ENST00000491747 USHBP1Q8N6Y0 703 aa12.7□□□□□ -0.38
BRCA1-219ENST00000491747 TNS1Q9HBL0 1735 aaKnown RBP12.7□□□□□ -0.38
BRCA1-219ENST00000491747 SHANK3Q9BYB0 1731 aa12.7□□□□□ -0.38
BRCA1-219ENST00000491747 CNGB1Q14028 1251 aaPredicted RBP12.7□□□□□ -0.38
BRCA1-219ENST00000491747 SMG6Q86US8 1419 aaKnown RBP12.7□□□□□ -0.38
BRCA1-219ENST00000491747 RGPD1P0DJD0 1748 aa12.69□□□□□ -0.38
BRCA1-219ENST00000491747 CCER2I3L3R5 266 aa12.69□□□□□ -0.38
BRCA1-219ENST00000491747 IL2RBP14784 551 aa12.69□□□□□ -0.38
BRCA1-219ENST00000491747 MARCH10Q8NA82 808 aaPredicted RBP12.69□□□□□ -0.38
BRCA1-219ENST00000491747 CDCA7Q9BWT1 371 aaPredicted RBP12.69□□□□□ -0.38
BRCA1-219ENST00000491747 MEGF6O75095 1541 aa12.68□□□□□ -0.38
BRCA1-219ENST00000491747 NEFLP07196 543 aa12.67□□□□□ -0.38
BRCA1-219ENST00000491747 NPC1L1Q9UHC9 1359 aa12.67□□□□□ -0.38
BRCA1-219ENST00000491747 TNS2Q63HR2 1409 aa12.67□□□□□ -0.38
BRCA1-219ENST00000491747 EXOC5O00471 708 aa12.67□□□□□ -0.38
BRCA1-219ENST00000491747 FKBP8Q14318 412 aa12.67□□□□□ -0.38
BRCA1-219ENST00000491747 FAM196AQ6ZSG2 479 aa12.67□□□□□ -0.38
BRCA1-219ENST00000491747 ANP32CO43423 234 aa12.66□□□□□ -0.38
BRCA1-219ENST00000491747 EIF4A2Q14240 407 aaKnown RBP12.66□□□□□ -0.38
BRCA1-219ENST00000491747 CCDC125Q86Z20 511 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms