RNA–Protein interactions for RNA: ENST00000485983.6

SRGAP3-207, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 1 (best)

Gene SRGAP3, Length 5,677 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-207ENST00000485983 TDO2P48775 406 aa12.54□□□□□ -0.4
SRGAP3-207ENST00000485983 NEK4P51957 841 aa12.54□□□□□ -0.4
SRGAP3-207ENST00000485983 TXLNBQ8N3L3 684 aa12.54□□□□□ -0.4
SRGAP3-207ENST00000485983 FMNL2Q96PY5 1086 aa12.54□□□□□ -0.4
SRGAP3-207ENST00000485983 CC2D2AQ9P2K1 1620 aa12.54□□□□□ -0.4
SRGAP3-207ENST00000485983 TANGO6Q9C0B7 1094 aa12.54□□□□□ -0.4
SRGAP3-207ENST00000485983 LRP2BPQ9P2M1 347 aa12.54□□□□□ -0.4
SRGAP3-207ENST00000485983 ARHGAP5Q13017 1502 aa12.53□□□□□ -0.4
SRGAP3-207ENST00000485983 FKBP4Q02790 459 aaKnown RBP eCLIP12.53□□□□□ -0.4
SRGAP3-207ENST00000485983 CCDC191Q8NCU4 936 aa12.53□□□□□ -0.4
SRGAP3-207ENST00000485983 TRIM5Q9C035 493 aa12.53□□□□□ -0.4
SRGAP3-207ENST00000485983 DACH1Q9UI36 760 aa12.53□□□□□ -0.4
SRGAP3-207ENST00000485983 CCP110O43303 1012 aa12.53□□□□□ -0.4
SRGAP3-207ENST00000485983 ZPR1O75312 459 aa12.53□□□□□ -0.4
SRGAP3-207ENST00000485983 CNTLNQ9NXG0 1405 aa12.53□□□□□ -0.4
SRGAP3-207ENST00000485983 SSBP05455 408 aaKnown RBP eCLIP12.53□□□□□ -0.4
SRGAP3-207ENST00000485983 SLC26A8Q96RN1 970 aa12.53□□□□□ -0.4
SRGAP3-207ENST00000485983 ZNF287Q9HBT7 754 aa12.53□□□□□ -0.4
SRGAP3-207ENST00000485983 CTNNA3Q9UI47 895 aa12.53□□□□□ -0.4
SRGAP3-207ENST00000485983 CYP46A1Q9Y6A2 500 aa12.53□□□□□ -0.4
SRGAP3-207ENST00000485983 NCAPD3P42695 1498 aa12.52□□□□□ -0.4
SRGAP3-207ENST00000485983 EXOSC9Q06265 439 aaKnown RBP12.52□□□□□ -0.4
SRGAP3-207ENST00000485983 CDKL5O76039 1030 aa12.52□□□□□ -0.41
SRGAP3-207ENST00000485983 GCC1Q96CN9 775 aa12.52□□□□□ -0.41
SRGAP3-207ENST00000485983 DEF6Q9H4E7 631 aa12.52□□□□□ -0.41
SRGAP3-207ENST00000485983 SEPT7Q16181 437 aaKnown RBP12.52□□□□□ -0.41
SRGAP3-207ENST00000485983 FAM13BQ9NYF5 915 aa12.52□□□□□ -0.41
SRGAP3-207ENST00000485983 CABP1Q9NZU7 370 aa12.52□□□□□ -0.41
SRGAP3-207ENST00000485983 TNIP1Q15025 636 aa12.52□□□□□ -0.41
SRGAP3-207ENST00000485983 IGF1RP08069 1367 aa12.51□□□□□ -0.41
SRGAP3-207ENST00000485983 TMEM87AQ8NBN3 555 aa12.51□□□□□ -0.41
SRGAP3-207ENST00000485983 CCDC97Q96F63 343 aaPredicted RBP12.51□□□□□ -0.41
SRGAP3-207ENST00000485983 TTLL12Q14166 644 aaPredicted RBP12.51□□□□□ -0.41
SRGAP3-207ENST00000485983 BTBD11A6QL63 1104 aa12.51□□□□□ -0.41
SRGAP3-207ENST00000485983 LRRCC1Q9C099 1032 aa12.51□□□□□ -0.41
SRGAP3-207ENST00000485983 MBD3O95983 291 aa12.51□□□□□ -0.41
SRGAP3-207ENST00000485983 CRACR2BQ8N4Y2 399 aaPredicted RBP12.51□□□□□ -0.41
SRGAP3-207ENST00000485983 ANKRD62A6NC57 917 aa12.5□□□□□ -0.41
SRGAP3-207ENST00000485983 SKIDA1Q1XH10 827 aa12.5□□□□□ -0.41
SRGAP3-207ENST00000485983 SCLT1Q96NL6 688 aa12.5□□□□□ -0.41
SRGAP3-207ENST00000485983 ZC3H6P61129 1189 aaKnown RBP12.5□□□□□ -0.41
SRGAP3-207ENST00000485983 CEBPZQ03701 1054 aaKnown RBP12.5□□□□□ -0.41
SRGAP3-207ENST00000485983 ADAMTS8Q9UP79 889 aa12.5□□□□□ -0.41
SRGAP3-207ENST00000485983 RTEL1-TNFRSF6BF6WH68 1400 aa12.5□□□□□ -0.41
SRGAP3-207ENST00000485983 USP5P45974 858 aa12.5□□□□□ -0.41
SRGAP3-207ENST00000485983 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.5□□□□□ -0.41
SRGAP3-207ENST00000485983 PPFIBP1Q86W92 1011 aa12.5□□□□□ -0.41
SRGAP3-207ENST00000485983 KCNH5Q8NCM2 988 aa12.5□□□□□ -0.41
SRGAP3-207ENST00000485983 NOM1Q5C9Z4 860 aaKnown RBP12.49□□□□□ -0.41
SRGAP3-207ENST00000485983 RSPH6AQ9H0K4 717 aa12.49□□□□□ -0.41
SRGAP3-207ENST00000485983 DHX8Q14562 1220 aaKnown RBP12.49□□□□□ -0.41
SRGAP3-207ENST00000485983 PPP4R3AQ6IN85 833 aa12.49□□□□□ -0.41
SRGAP3-207ENST00000485983 MAP7D2Q96T17 732 aa12.49□□□□□ -0.41
SRGAP3-207ENST00000485983 SCAPERQ9BY12 1400 aa12.49□□□□□ -0.41
SRGAP3-207ENST00000485983 RABEP1Q15276 862 aa12.49□□□□□ -0.41
SRGAP3-207ENST00000485983 SERPINC1P01008 464 aa12.48□□□□□ -0.41
SRGAP3-207ENST00000485983 AEBP1Q8IUX7 1158 aa12.48□□□□□ -0.41
SRGAP3-207ENST00000485983 CAVIN4Q5BKX8 364 aa12.48□□□□□ -0.41
SRGAP3-207ENST00000485983 VSIG10Q8N0Z9 540 aa12.48□□□□□ -0.41
SRGAP3-207ENST00000485983 ABCF2Q9UG63 623 aa12.48□□□□□ -0.41
SRGAP3-207ENST00000485983 POTEJP0CG39 1038 aa12.48□□□□□ -0.41
SRGAP3-207ENST00000485983 CCDC39Q9UFE4 941 aa12.48□□□□□ -0.41
SRGAP3-207ENST00000485983 PPM1FP49593 454 aaPredicted RBP12.48□□□□□ -0.41
SRGAP3-207ENST00000485983 CHMP4BP1P59074 171 aa12.48□□□□□ -0.41
SRGAP3-207ENST00000485983 XPCQ01831 940 aaPredicted RBP12.48□□□□□ -0.41
SRGAP3-207ENST00000485983 AACSQ86V21 672 aa12.48□□□□□ -0.41
SRGAP3-207ENST00000485983 SEPT11Q9NVA2 429 aaKnown RBP12.48□□□□□ -0.41
SRGAP3-207ENST00000485983 TMOD3Q9NYL9 352 aa12.48□□□□□ -0.41
SRGAP3-207ENST00000485983 ME1P48163 572 aa12.48□□□□□ -0.41
SRGAP3-207ENST00000485983 WASF1Q92558 559 aa12.48□□□□□ -0.41
SRGAP3-207ENST00000485983 SYNJ2O15056 1496 aa12.48□□□□□ -0.41
SRGAP3-207ENST00000485983 IDH1O75874 414 aaKnown RBP12.47□□□□□ -0.41
SRGAP3-207ENST00000485983 STK3Q13188 491 aa12.47□□□□□ -0.41
SRGAP3-207ENST00000485983 WDR78Q5VTH9 848 aa12.47□□□□□ -0.41
SRGAP3-207ENST00000485983 CCDC7Q96M83 1385 aa12.47□□□□□ -0.41
SRGAP3-207ENST00000485983 POLR3DP05423 398 aaPredicted RBP12.47□□□□□ -0.41
SRGAP3-207ENST00000485983 EZRP15311 586 aaKnown RBP12.47□□□□□ -0.41
SRGAP3-207ENST00000485983 CCDC181Q5TID7 509 aa12.47□□□□□ -0.41
SRGAP3-207ENST00000485983 ZNF428Q96B54 188 aa12.47□□□□□ -0.41
SRGAP3-207ENST00000485983 AIDAQ96BJ3 306 aa12.47□□□□□ -0.41
SRGAP3-207ENST00000485983 CUX1P39880 1505 aa12.47□□□□□ -0.41
SRGAP3-207ENST00000485983 H0YHG0 523 aa12.47□□□□□ -0.41
SRGAP3-207ENST00000485983 FIBPO43427 364 aa12.47□□□□□ -0.41
SRGAP3-207ENST00000485983 PRDM2Q13029 1718 aa12.47□□□□□ -0.41
SRGAP3-207ENST00000485983 SPDYE4A6NLX3 237 aa12.46□□□□□ -0.41
SRGAP3-207ENST00000485983 C1orf115Q9H7X2 142 aa12.46□□□□□ -0.41
SRGAP3-207ENST00000485983 PPP2R1AP30153 589 aa12.46□□□□□ -0.41
SRGAP3-207ENST00000485983 RNF214Q8ND24 703 aa12.46□□□□□ -0.41
SRGAP3-207ENST00000485983 NOB1Q9ULX3 412 aaKnown RBP12.46□□□□□ -0.41
SRGAP3-207ENST00000485983 IFIT1P09914 478 aaKnown RBP12.46□□□□□ -0.41
SRGAP3-207ENST00000485983 METTL24Q5JXM2 366 aa12.46□□□□□ -0.41
SRGAP3-207ENST00000485983 NGLY1Q96IV0 654 aa12.46□□□□□ -0.41
SRGAP3-207ENST00000485983 SLC12A5Q9H2X9 1139 aa12.46□□□□□ -0.41
SRGAP3-207ENST00000485983 GOLGA6L10A6NI86 522 aa12.46□□□□□ -0.42
SRGAP3-207ENST00000485983 SRGAP3O43295 1099 aa12.46□□□□□ -0.42
SRGAP3-207ENST00000485983 CALRP27797 417 aaKnown RBP12.46□□□□□ -0.42
SRGAP3-207ENST00000485983 BRD4O60885 1362 aaPredicted RBP12.46□□□□□ -0.42
SRGAP3-207ENST00000485983 PPP1R12BO60237 982 aaPredicted RBP12.46□□□□□ -0.42
SRGAP3-207ENST00000485983 BLOC1S2Q6QNY1 142 aa12.46□□□□□ -0.42
SRGAP3-207ENST00000485983 ANKIB1Q9P2G1 1089 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms