RNA–Protein interactions for RNA: ENST00000483690.1

MCF2-207, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

TSL 3

Gene MCF2, Length 752 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-207ENST00000483690 ANKLE1Q8NAG6 615 aa13.63□□□□□ -0.23
MCF2-207ENST00000483690 PLPP7Q8NBV4 271 aa13.63□□□□□ -0.23
MCF2-207ENST00000483690 LZTS3O60299 673 aaPredicted RBP13.62□□□□□ -0.23
MCF2-207ENST00000483690 SH3BP2P78314 561 aa13.62□□□□□ -0.23
MCF2-207ENST00000483690 MAP7D1Q3KQU3 841 aa13.62□□□□□ -0.23
MCF2-207ENST00000483690 C4orf48Q5BLP8 95 aa13.62□□□□□ -0.23
MCF2-207ENST00000483690 NCOA4Q13772 614 aa13.61□□□□□ -0.23
MCF2-207ENST00000483690 AEBP1Q8IUX7 1158 aa13.61□□□□□ -0.23
MCF2-207ENST00000483690 MKRN1Q9UHC7 482 aaKnown RBP13.6□□□□□ -0.23
MCF2-207ENST00000483690 TRIM32Q13049 653 aa13.59□□□□□ -0.23
MCF2-207ENST00000483690 NBPF20Q3BBV1 942 aa13.59□□□□□ -0.23
MCF2-207ENST00000483690 C1QTNF2Q9BXJ5 285 aa13.59□□□□□ -0.23
MCF2-207ENST00000483690 CHIC2Q9UKJ5 165 aa13.59□□□□□ -0.23
MCF2-207ENST00000483690 GIGYF1O75420 1035 aaPredicted RBP13.58□□□□□ -0.24
MCF2-207ENST00000483690 EML3Q32P44 896 aa13.58□□□□□ -0.24
MCF2-207ENST00000483690 RNF20Q5VTR2 975 aa13.58□□□□□ -0.24
MCF2-207ENST00000483690 CDV3Q9UKY7 258 aaKnown RBP13.58□□□□□ -0.24
MCF2-207ENST00000483690 ATP5J2-PTCD1G3V325 749 aa13.57□□□□□ -0.24
MCF2-207ENST00000483690 ELOAQ14241 798 aaKnown RBP13.57□□□□□ -0.24
MCF2-207ENST00000483690 PLA2G2CQ5R387 149 aa13.57□□□□□ -0.24
MCF2-207ENST00000483690 PPP1R18Q6NYC8 613 aa13.57□□□□□ -0.24
MCF2-207ENST00000483690 DOLKQ9UPQ8 538 aa13.57□□□□□ -0.24
MCF2-207ENST00000483690 TRAF7Q6Q0C0 670 aa13.56□□□□□ -0.24
MCF2-207ENST00000483690 TRMT44Q8IYL2 757 aaKnown RBP13.56□□□□□ -0.24
MCF2-207ENST00000483690 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.56□□□□□ -0.24
MCF2-207ENST00000483690 FAM196BA6NMK8 535 aa13.55□□□□□ -0.24
MCF2-207ENST00000483690 WNT7BP56706 349 aa13.55□□□□□ -0.24
MCF2-207ENST00000483690 LARP1Q6PKG0 1096 aaKnown RBP13.55□□□□□ -0.24
MCF2-207ENST00000483690 NOVA2Q9UNW9 492 aaKnown RBP13.55□□□□□ -0.24
MCF2-207ENST00000483690 RASA1P20936 1047 aa13.54□□□□□ -0.24
MCF2-207ENST00000483690 TSGA10IPQ3SY00 556 aa13.54□□□□□ -0.24
MCF2-207ENST00000483690 CCDC85AQ96PX6 553 aaPredicted RBP13.54□□□□□ -0.24
MCF2-207ENST00000483690 USP17L15C9J2P7 530 aa13.53□□□□□ -0.24
MCF2-207ENST00000483690 USP17L10C9JJH3 530 aa13.53□□□□□ -0.24
MCF2-207ENST00000483690 USP17L13C9JLJ4 530 aa13.53□□□□□ -0.24
MCF2-207ENST00000483690 USP17L12C9JPN9 530 aa13.53□□□□□ -0.24
MCF2-207ENST00000483690 USP17L11C9JVI0 530 aa13.53□□□□□ -0.24
MCF2-207ENST00000483690 USP17L21D6R901 530 aa13.53□□□□□ -0.24
MCF2-207ENST00000483690 USP17L18D6R9N7 530 aa13.53□□□□□ -0.24
MCF2-207ENST00000483690 USP17L22D6RA61 530 aa13.53□□□□□ -0.24
MCF2-207ENST00000483690 USP17L17D6RBQ6 530 aa13.53□□□□□ -0.24
MCF2-207ENST00000483690 USP17L19D6RCP7 530 aa13.53□□□□□ -0.24
MCF2-207ENST00000483690 USP17L20D6RJB6 530 aa13.53□□□□□ -0.24
MCF2-207ENST00000483690 VARSP26640 1264 aaKnown RBP13.53□□□□□ -0.24
MCF2-207ENST00000483690 RPIAP49247 311 aa13.53□□□□□ -0.24
MCF2-207ENST00000483690 USP17L24Q0WX57 530 aa13.53□□□□□ -0.24
MCF2-207ENST00000483690 NOD1Q9Y239 953 aa13.53□□□□□ -0.24
MCF2-207ENST00000483690 CARNS1A5YM72 827 aa13.52□□□□□ -0.25
MCF2-207ENST00000483690 TMEM88BA6NKF7 163 aa13.52□□□□□ -0.25
MCF2-207ENST00000483690 SKOR1P84550 965 aa13.52□□□□□ -0.25
MCF2-207ENST00000483690 CRTC2Q53ET0 693 aaPredicted RBP13.52□□□□□ -0.25
MCF2-207ENST00000483690 OXLD1Q5BKU9 147 aa13.52□□□□□ -0.25
MCF2-207ENST00000483690 TRIM50Q86XT4 487 aa13.52□□□□□ -0.25
MCF2-207ENST00000483690 ZMIZ1Q9ULJ6 1067 aa13.52□□□□□ -0.25
MCF2-207ENST00000483690 BRD1O95696 1058 aa13.51□□□□□ -0.25
MCF2-207ENST00000483690 CCDC125Q86Z20 511 aa13.51□□□□□ -0.25
MCF2-207ENST00000483690 SEPT12Q8IYM1 358 aa13.51□□□□□ -0.25
MCF2-207ENST00000483690 ESPNB1AK53 854 aa13.5□□□□□ -0.25
MCF2-207ENST00000483690 PATL2C9JE40 543 aaKnown RBP13.5□□□□□ -0.25
MCF2-207ENST00000483690 CD2BP2O95400 341 aaKnown RBP13.5□□□□□ -0.25
MCF2-207ENST00000483690 PTK7Q13308 1070 aa13.5□□□□□ -0.25
MCF2-207ENST00000483690 ATP1A2P50993 1020 aa13.49□□□□□ -0.25
MCF2-207ENST00000483690 TMEM164Q5U3C3 297 aa13.49□□□□□ -0.25
MCF2-207ENST00000483690 OGFOD1Q8N543 542 aa13.49□□□□□ -0.25
MCF2-207ENST00000483690 EHBP1Q8NDI1 1231 aa13.49□□□□□ -0.25
MCF2-207ENST00000483690 STK32AQ8WU08 396 aa13.49□□□□□ -0.25
MCF2-207ENST00000483690 KCTD15Q96SI1 283 aaPredicted RBP13.49□□□□□ -0.25
MCF2-207ENST00000483690 PCDHB11Q9Y5F2 797 aa13.49□□□□□ -0.25
MCF2-207ENST00000483690 VASH1Q7L8A9 365 aaPredicted RBP13.47□□□□□ -0.25
MCF2-207ENST00000483690 FAM200AQ8TCP9 573 aa13.47□□□□□ -0.25
MCF2-207ENST00000483690 SIRT1Q96EB6 747 aa13.47□□□□□ -0.25
MCF2-207ENST00000483690 MAP4K5Q9Y4K4 846 aa13.47□□□□□ -0.25
MCF2-207ENST00000483690 RAB15P59190 212 aa13.46□□□□□ -0.25
MCF2-207ENST00000483690 KCNA1Q09470 495 aa13.46□□□□□ -0.25
MCF2-207ENST00000483690 DNAAF2Q9NVR5 837 aaKnown RBP13.46□□□□□ -0.25
MCF2-207ENST00000483690 USP4Q13107 963 aa13.45□□□□□ -0.26
MCF2-207ENST00000483690 ANKMY2Q8IV38 441 aa13.45□□□□□ -0.26
MCF2-207ENST00000483690 ZNF594Q96JF6 807 aaPredicted RBP13.45□□□□□ -0.26
MCF2-207ENST00000483690 CDCA7Q9BWT1 371 aaPredicted RBP13.45□□□□□ -0.26
MCF2-207ENST00000483690 GTF2IP78347 998 aa13.44□□□□□ -0.26
MCF2-207ENST00000483690 CLDN10P78369 228 aa13.44□□□□□ -0.26
MCF2-207ENST00000483690 RC3H1Q5TC82 1133 aaKnown RBP13.44□□□□□ -0.26
MCF2-207ENST00000483690 B4GALNT3Q6L9W6 998 aa13.44□□□□□ -0.26
MCF2-207ENST00000483690 LARGE2Q8N3Y3 721 aa13.44□□□□□ -0.26
MCF2-207ENST00000483690 ARID5BQ14865 1188 aa13.43□□□□□ -0.26
MCF2-207ENST00000483690 DPYDQ12882 1025 aa13.42□□□□□ -0.26
MCF2-207ENST00000483690 LIAT1Q6ZQX7 453 aa13.42□□□□□ -0.26
MCF2-207ENST00000483690 RBM19Q9Y4C8 960 aaKnown RBP13.42□□□□□ -0.26
MCF2-207ENST00000483690 INTS6LQ5JSJ4 861 aaKnown RBP13.41□□□□□ -0.26
MCF2-207ENST00000483690 MYCP01106 439 aaPredicted RBP13.4□□□□□ -0.26
MCF2-207ENST00000483690 PSME1Q06323 249 aa13.39□□□□□ -0.27
MCF2-207ENST00000483690 SIX5Q8N196 739 aa13.39□□□□□ -0.27
MCF2-207ENST00000483690 CDK15Q96Q40 435 aa13.39□□□□□ -0.27
MCF2-207ENST00000483690 CCDC9Q9Y3X0 531 aaKnown RBP13.39□□□□□ -0.27
MCF2-207ENST00000483690 ERVH48-1M5A8F1 160 aa13.38□□□□□ -0.27
MCF2-207ENST00000483690 IFFO2Q5TF58 517 aa13.38□□□□□ -0.27
MCF2-207ENST00000483690 TRIM52Q96A61 297 aa13.38□□□□□ -0.27
MCF2-207ENST00000483690 GZF1Q9H116 711 aaPredicted RBP13.38□□□□□ -0.27
MCF2-207ENST00000483690 KIAA1024Q9UPX6 916 aa13.38□□□□□ -0.27
MCF2-207ENST00000483690 ZBTB7BO15156 539 aaPredicted RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms