RNA–Protein interactions for RNA: ENST00000483690.1

MCF2-207, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

TSL 3

Gene MCF2, Length 752 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-207ENST00000483690 AEBP2Q6ZN18 517 aaPredicted RBP32.89■■■□□ 2.86
MCF2-207ENST00000483690 CHIC1Q5VXU3 224 aa32.82■■■□□ 2.84
MCF2-207ENST00000483690 PHF23Q9BUL5 403 aaPredicted RBP28.91■■■□□ 2.22
MCF2-207ENST00000483690 SENP3Q9H4L4 574 aaPredicted RBP27.86■■■□□ 2.05
MCF2-207ENST00000483690 PLPPR3Q6T4P5 718 aa27■■□□□ 1.91
MCF2-207ENST00000483690 FOXD1Q16676 465 aa25.73■■□□□ 1.71
MCF2-207ENST00000483690 ADRA2BP18089 450 aa25.33■■□□□ 1.65
MCF2-207ENST00000483690 PPP6R1Q9UPN7 881 aa25.28■■□□□ 1.64
MCF2-207ENST00000483690 PIAS4Q8N2W9 510 aaPredicted RBP24.48■■□□□ 1.51
MCF2-207ENST00000483690 KCNA4P22459 653 aa24.07■■□□□ 1.44
MCF2-207ENST00000483690 PPP4R3CPQ6ZMV5 832 aa23.86■■□□□ 1.41
MCF2-207ENST00000483690 MSH5O43196 834 aa23.72■■□□□ 1.39
MCF2-207ENST00000483690 NCBP3Q53F19 620 aaKnown RBP23.47■■□□□ 1.35
MCF2-207ENST00000483690 SCAF1Q9H7N4 1312 aaKnown RBP23.23■■□□□ 1.31
MCF2-207ENST00000483690 EHMT2Q96KQ7 1210 aa23.22■■□□□ 1.31
MCF2-207ENST00000483690 NPM3O75607 178 aaKnown RBP23.08■■□□□ 1.29
MCF2-207ENST00000483690 SLC4A1APQ9BWU0 796 aaKnown RBP23.08■■□□□ 1.29
MCF2-207ENST00000483690 CNKSR2Q8WXI2 1034 aa23.04■■□□□ 1.28
MCF2-207ENST00000483690 MAPK8IP2Q13387 824 aaPredicted RBP22.76■■□□□ 1.23
MCF2-207ENST00000483690 CSRNP3Q8WYN3 585 aa22.6■■□□□ 1.21
MCF2-207ENST00000483690 POTEDQ86YR6 584 aa22.58■■□□□ 1.21
MCF2-207ENST00000483690 RNF216Q9NWF9 866 aaPredicted RBP22.42■■□□□ 1.18
MCF2-207ENST00000483690 DMRT2Q9Y5R5 561 aa22.33■■□□□ 1.17
MCF2-207ENST00000483690 DNAJC5BQ9UF47 199 aa22.28■■□□□ 1.16
MCF2-207ENST00000483690 ZBTB22O15209 634 aa22.14■■□□□ 1.13
MCF2-207ENST00000483690 HOXD11P31277 338 aaPredicted RBP22.13■■□□□ 1.13
MCF2-207ENST00000483690 FOXD4L1Q9NU39 408 aa21.98■■□□□ 1.11
MCF2-207ENST00000483690 SLC4A2P04920 1241 aa21.6■■□□□ 1.05
MCF2-207ENST00000483690 DCAF8L1A6NGE4 600 aa21.38■■□□□ 1.01
MCF2-207ENST00000483690 MYCNP04198 464 aaPredicted RBP21.34■■□□□ 1.01
MCF2-207ENST00000483690 ATXN8OSP0DMR3 200 aa21.16■□□□□ 0.98
MCF2-207ENST00000483690 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.14■□□□□ 0.97
MCF2-207ENST00000483690 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.87■□□□□ 0.93
MCF2-207ENST00000483690 HNRNPUL2Q1KMD3 747 aaKnown RBP20.87■□□□□ 0.93
MCF2-207ENST00000483690 U3KPZ7 1027 aaPredicted RBP20.83■□□□□ 0.93
MCF2-207ENST00000483690 SAMD1Q6SPF0 538 aaPredicted RBP20.81■□□□□ 0.92
MCF2-207ENST00000483690 ATF5Q9Y2D1 282 aaPredicted RBP20.67■□□□□ 0.9
MCF2-207ENST00000483690 APLP2Q06481 763 aa20.5■□□□□ 0.87
MCF2-207ENST00000483690 FKBP8Q14318 412 aa20.43■□□□□ 0.86
MCF2-207ENST00000483690 ZNF219Q9P2Y4 722 aaPredicted RBP20.31■□□□□ 0.84
MCF2-207ENST00000483690 RNF39Q9H2S5 420 aa20.27■□□□□ 0.84
MCF2-207ENST00000483690 CACNB1Q02641 598 aaPredicted RBP20.16■□□□□ 0.82
MCF2-207ENST00000483690 SPINK5Q9NQ38 1064 aaPredicted RBP20.05■□□□□ 0.8
MCF2-207ENST00000483690 TRHP20396 242 aaPredicted RBP20.04■□□□□ 0.8
MCF2-207ENST00000483690 C1QBPQ07021 282 aaKnown RBP20■□□□□ 0.79
MCF2-207ENST00000483690 CAPN15O75808 1086 aa19.97■□□□□ 0.79
MCF2-207ENST00000483690 POLA2Q14181 598 aa19.86■□□□□ 0.77
MCF2-207ENST00000483690 FBLN2P98095 1184 aa19.84■□□□□ 0.77
MCF2-207ENST00000483690 AMER1Q5JTC6 1135 aaPredicted RBP19.84■□□□□ 0.77
MCF2-207ENST00000483690 MKRN4PQ13434 485 aaPredicted RBP19.81■□□□□ 0.76
MCF2-207ENST00000483690 RTN4Q9NQC3 1192 aaKnown RBP19.78■□□□□ 0.76
MCF2-207ENST00000483690 SPDYE4A6NLX3 237 aa19.75■□□□□ 0.75
MCF2-207ENST00000483690 ABCB7O75027 752 aa19.63■□□□□ 0.73
MCF2-207ENST00000483690 ZBTB12Q9Y330 459 aaPredicted RBP19.62■□□□□ 0.73
MCF2-207ENST00000483690 FBXO3Q9UK99 471 aa19.54■□□□□ 0.72
MCF2-207ENST00000483690 PROM2Q8N271 834 aa19.47■□□□□ 0.71
MCF2-207ENST00000483690 DSG3P32926 999 aa19.44■□□□□ 0.7
MCF2-207ENST00000483690 VASPP50552 380 aaPredicted RBP19.22■□□□□ 0.67
MCF2-207ENST00000483690 ZNF692Q9BU19 519 aaPredicted RBP19.17■□□□□ 0.66
MCF2-207ENST00000483690 OSCARQ8IYS5 282 aa19.16■□□□□ 0.66
MCF2-207ENST00000483690 SPDYE2BA6NHP3 402 aa19.12■□□□□ 0.65
MCF2-207ENST00000483690 SPDYE6P0CI01 402 aa19.12■□□□□ 0.65
MCF2-207ENST00000483690 SPDYE2Q495Y8 402 aa19.12■□□□□ 0.65
MCF2-207ENST00000483690 SLC24A1O60721 1099 aa19.02■□□□□ 0.64
MCF2-207ENST00000483690 SSUH2Q9Y2M2 353 aa19.02■□□□□ 0.64
MCF2-207ENST00000483690 IFNLR1Q8IU57 520 aaPredicted RBP18.99■□□□□ 0.63
MCF2-207ENST00000483690 PABPN1Q86U42 306 aaKnown RBP eCLIP18.93■□□□□ 0.62
MCF2-207ENST00000483690 STAG3Q9UJ98 1225 aa18.9■□□□□ 0.62
MCF2-207ENST00000483690 KLHL34Q8N239 644 aa18.77■□□□□ 0.6
MCF2-207ENST00000483690 PLCD3Q8N3E9 789 aa18.73■□□□□ 0.59
MCF2-207ENST00000483690 SPOCK2Q92563 424 aa18.69■□□□□ 0.58
MCF2-207ENST00000483690 MIER1Q8N108 512 aa18.67■□□□□ 0.58
MCF2-207ENST00000483690 PKD2Q13563 968 aa18.62■□□□□ 0.57
MCF2-207ENST00000483690 PLEKHG5O94827 1062 aa18.56■□□□□ 0.56
MCF2-207ENST00000483690 DCAF8L2P0C7V8 631 aa18.55■□□□□ 0.56
MCF2-207ENST00000483690 RBM42Q9BTD8 480 aaKnown RBP18.55■□□□□ 0.56
MCF2-207ENST00000483690 ZBTB47Q9UFB7 747 aaPredicted RBP18.49■□□□□ 0.55
MCF2-207ENST00000483690 AKT1S1Q96B36 256 aa18.45■□□□□ 0.54
MCF2-207ENST00000483690 ECM2O94769 699 aaPredicted RBP18.41■□□□□ 0.54
MCF2-207ENST00000483690 SPDYE1Q8NFV5 336 aaPredicted RBP18.41■□□□□ 0.54
MCF2-207ENST00000483690 PLCB2Q00722 1185 aa18.32■□□□□ 0.52
MCF2-207ENST00000483690 CIZ1Q9ULV3 898 aaPredicted RBP18.29■□□□□ 0.52
MCF2-207ENST00000483690 CLEC11AQ9Y240 323 aa18.29■□□□□ 0.52
MCF2-207ENST00000483690 REM2Q8IYK8 340 aaPredicted RBP18.26■□□□□ 0.51
MCF2-207ENST00000483690 PRR29P0C7W0 189 aa18.22■□□□□ 0.51
MCF2-207ENST00000483690 RGL2O15211 777 aa18.18■□□□□ 0.5
MCF2-207ENST00000483690 TRIM41Q8WV44 630 aa18.14■□□□□ 0.49
MCF2-207ENST00000483690 GSE1Q14687 1217 aa18.11■□□□□ 0.49
MCF2-207ENST00000483690 CREBZFQ9NS37 354 aa18.11■□□□□ 0.49
MCF2-207ENST00000483690 BBXQ8WY36 941 aaPredicted RBP18.09■□□□□ 0.49
MCF2-207ENST00000483690 HAP1P54257 671 aaPredicted RBP18.08■□□□□ 0.48
MCF2-207ENST00000483690 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.08■□□□□ 0.48
MCF2-207ENST00000483690 NUBP1P53384 320 aa18.07■□□□□ 0.48
MCF2-207ENST00000483690 PITPNM1O00562 1244 aa18.04■□□□□ 0.48
MCF2-207ENST00000483690 NPM1P06748 294 aaKnown RBP eCLIP18.04■□□□□ 0.48
MCF2-207ENST00000483690 DCAF8Q5TAQ9 597 aa18.01■□□□□ 0.47
MCF2-207ENST00000483690 MNX1P50219 401 aaPredicted RBP17.99■□□□□ 0.47
MCF2-207ENST00000483690 FAM212AQ96EL1 285 aa17.97■□□□□ 0.47
MCF2-207ENST00000483690 CHGAP10645 457 aaKnown RBP17.94■□□□□ 0.46
MCF2-207ENST00000483690 PAXIP1Q6ZW49 1069 aaPredicted RBP17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms