RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 PLEKHG3A1L390 1219 aa11.25□□□□□ -0.61
USP54-213ENST00000481991 SGIP1Q9BQI5 828 aa11.25□□□□□ -0.61
USP54-213ENST00000481991 AXIN2Q9Y2T1 843 aa11.25□□□□□ -0.61
USP54-213ENST00000481991 CPDO75976 1380 aa11.25□□□□□ -0.61
USP54-213ENST00000481991 CABP2Q9NPB3 220 aa11.24□□□□□ -0.61
USP54-213ENST00000481991 ATP7BP35670 1465 aa11.24□□□□□ -0.61
USP54-213ENST00000481991 GRIN3BO60391 1043 aa11.23□□□□□ -0.61
USP54-213ENST00000481991 GPBP1L1Q9HC44 474 aaPredicted RBP11.23□□□□□ -0.61
USP54-213ENST00000481991 TFCP2L1Q9NZI6 479 aa11.23□□□□□ -0.61
USP54-213ENST00000481991 COL5A2P05997 1499 aaPredicted RBP11.23□□□□□ -0.61
USP54-213ENST00000481991 USP19O94966 1318 aa11.22□□□□□ -0.61
USP54-213ENST00000481991 UTRNP46939 3433 aa11.22□□□□□ -0.61
USP54-213ENST00000481991 NLGN2Q8NFZ4 835 aa11.22□□□□□ -0.61
USP54-213ENST00000481991 CABP1Q9NZU7 370 aa11.22□□□□□ -0.61
USP54-213ENST00000481991 PHRF1Q9P1Y6 1649 aaKnown RBP11.22□□□□□ -0.61
USP54-213ENST00000481991 CASZ1Q86V15 1759 aa11.21□□□□□ -0.61
USP54-213ENST00000481991 CRYBG1Q9Y4K1 1723 aa11.21□□□□□ -0.61
USP54-213ENST00000481991 POLR3AO14802 1390 aaPredicted RBP11.21□□□□□ -0.61
USP54-213ENST00000481991 WDR17Q8IZU2 1322 aa11.21□□□□□ -0.61
USP54-213ENST00000481991 ZNF827Q17R98 1081 aa11.21□□□□□ -0.61
USP54-213ENST00000481991 CARD10Q9BWT7 1032 aa11.21□□□□□ -0.61
USP54-213ENST00000481991 AATKQ6ZMQ8 1374 aa11.2□□□□□ -0.62
USP54-213ENST00000481991 CAPN15O75808 1086 aa11.2□□□□□ -0.62
USP54-213ENST00000481991 HSPA6P17066 643 aa11.2□□□□□ -0.62
USP54-213ENST00000481991 KCNQ4P56696 695 aa11.2□□□□□ -0.62
USP54-213ENST00000481991 NLRP2Q9NX02 1062 aa11.2□□□□□ -0.62
USP54-213ENST00000481991 YBX3P16989 372 aaKnown RBP eCLIP11.19□□□□□ -0.62
USP54-213ENST00000481991 POTEDQ86YR6 584 aa11.19□□□□□ -0.62
USP54-213ENST00000481991 SLC16A10Q8TF71 515 aa11.19□□□□□ -0.62
USP54-213ENST00000481991 SYTL4Q96C24 671 aaPredicted RBP11.19□□□□□ -0.62
USP54-213ENST00000481991 LRRC4BQ9NT99 713 aa11.19□□□□□ -0.62
USP54-213ENST00000481991 KAT6BQ8WYB5 2073 aa11.19□□□□□ -0.62
USP54-213ENST00000481991 PARP4Q9UKK3 1724 aaKnown RBP11.18□□□□□ -0.62
USP54-213ENST00000481991 KCNH5Q8NCM2 988 aa11.18□□□□□ -0.62
USP54-213ENST00000481991 DDX54Q8TDD1 881 aaKnown RBP11.18□□□□□ -0.62
USP54-213ENST00000481991 WWC3Q9ULE0 1092 aa11.18□□□□□ -0.62
USP54-213ENST00000481991 SBF2Q86WG5 1849 aa11.18□□□□□ -0.62
USP54-213ENST00000481991 PPIP5K1Q6PFW1 1433 aa11.18□□□□□ -0.62
USP54-213ENST00000481991 ADGRB1O14514 1584 aa11.16□□□□□ -0.62
USP54-213ENST00000481991 MSL1Q68DK7 614 aa11.16□□□□□ -0.62
USP54-213ENST00000481991 ARHGEF25Q86VW2 580 aa11.16□□□□□ -0.62
USP54-213ENST00000481991 USP6P35125 1406 aa11.16□□□□□ -0.62
USP54-213ENST00000481991 MAP3K5Q99683 1374 aa11.16□□□□□ -0.62
USP54-213ENST00000481991 ITSN1Q15811 1721 aa11.15□□□□□ -0.62
USP54-213ENST00000481991 PEAK1Q9H792 1746 aa11.15□□□□□ -0.62
USP54-213ENST00000481991 LMO7Q8WWI1 1683 aa11.15□□□□□ -0.62
USP54-213ENST00000481991 AKT1S1Q96B36 256 aa11.15□□□□□ -0.62
USP54-213ENST00000481991 STAC3Q96MF2 364 aa11.15□□□□□ -0.62
USP54-213ENST00000481991 ATP10DQ9P241 1426 aa11.15□□□□□ -0.62
USP54-213ENST00000481991 PNPLA7Q6ZV29 1317 aa11.14□□□□□ -0.63
USP54-213ENST00000481991 LRRC37A3O60309 1634 aa11.14□□□□□ -0.63
USP54-213ENST00000481991 IL2RBP14784 551 aa11.14□□□□□ -0.63
USP54-213ENST00000481991 NBPF1Q3BBV0 1214 aa11.14□□□□□ -0.63
USP54-213ENST00000481991 BRD4O60885 1362 aaPredicted RBP11.14□□□□□ -0.63
USP54-213ENST00000481991 RGPD3A6NKT7 1758 aaPredicted RBP11.13□□□□□ -0.63
USP54-213ENST00000481991 RGPD4Q7Z3J3 1758 aa11.13□□□□□ -0.63
USP54-213ENST00000481991 BCL9O00512 1426 aa11.13□□□□□ -0.63
USP54-213ENST00000481991 SLC27A3Q5K4L6 730 aa11.13□□□□□ -0.63
USP54-213ENST00000481991 PRIM1P49642 420 aaKnown RBP11.12□□□□□ -0.63
USP54-213ENST00000481991 CCDC7Q96M83 1385 aa11.12□□□□□ -0.63
USP54-213ENST00000481991 CENPJQ9HC77 1338 aaPredicted RBP11.11□□□□□ -0.63
USP54-213ENST00000481991 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.11□□□□□ -0.63
USP54-213ENST00000481991 LTV1Q96GA3 475 aaPredicted RBP11.11□□□□□ -0.63
USP54-213ENST00000481991 ZNF692Q9BU19 519 aaPredicted RBP11.11□□□□□ -0.63
USP54-213ENST00000481991 AKAP12Q02952 1782 aa11.11□□□□□ -0.63
USP54-213ENST00000481991 TTC21BQ7Z4L5 1316 aa11.1□□□□□ -0.63
USP54-213ENST00000481991 APLP1P51693 650 aa11.1□□□□□ -0.63
USP54-213ENST00000481991 ANKRD24Q8TF21 1146 aa11.1□□□□□ -0.63
USP54-213ENST00000481991 CCNL1Q9UK58 526 aaPredicted RBP11.1□□□□□ -0.63
USP54-213ENST00000481991 CPSF1Q10570 1443 aaKnown RBP11.09□□□□□ -0.63
USP54-213ENST00000481991 CEP350Q5VT06 3117 aa11.09□□□□□ -0.63
USP54-213ENST00000481991 COL23A1Q86Y22 540 aaPredicted RBP11.09□□□□□ -0.63
USP54-213ENST00000481991 PIAS4Q8N2W9 510 aaPredicted RBP11.09□□□□□ -0.63
USP54-213ENST00000481991 SHANK3Q9BYB0 1731 aa11.09□□□□□ -0.63
USP54-213ENST00000481991 EVC2Q86UK5 1308 aa11.08□□□□□ -0.64
USP54-213ENST00000481991 TNS2Q63HR2 1409 aa11.07□□□□□ -0.64
USP54-213ENST00000481991 COL13A1Q5TAT6 717 aaPredicted RBP11.06□□□□□ -0.64
USP54-213ENST00000481991 CD2APQ9Y5K6 639 aa11.06□□□□□ -0.64
USP54-213ENST00000481991 ARHGEF28Q8N1W1 1705 aaKnown RBP11.06□□□□□ -0.64
USP54-213ENST00000481991 RGPD5Q99666 1765 aa11.05□□□□□ -0.64
USP54-213ENST00000481991 KIF3CO14782 793 aa11.05□□□□□ -0.64
USP54-213ENST00000481991 C16orf71Q8IYS4 520 aaPredicted RBP11.05□□□□□ -0.64
USP54-213ENST00000481991 TNS4Q8IZW8 715 aa11.05□□□□□ -0.64
USP54-213ENST00000481991 TTC21AQ8NDW8 1320 aa11.05□□□□□ -0.64
USP54-213ENST00000481991 TOPAZ1Q8N9V7 1692 aa11.04□□□□□ -0.64
USP54-213ENST00000481991 SLIT3O75094 1523 aa11.04□□□□□ -0.64
USP54-213ENST00000481991 RAB3GAP2Q9H2M9 1393 aa11.04□□□□□ -0.64
USP54-213ENST00000481991 PHF14O94880 888 aa11.04□□□□□ -0.64
USP54-213ENST00000481991 TMC1Q8TDI8 760 aa11.04□□□□□ -0.64
USP54-213ENST00000481991 KTN1Q86UP2 1357 aaKnown RBP11.03□□□□□ -0.64
USP54-213ENST00000481991 COL18A1P39060 1754 aa11.03□□□□□ -0.64
USP54-213ENST00000481991 TOMM70O94826 608 aa11.03□□□□□ -0.64
USP54-213ENST00000481991 HTRA3P83110 453 aa11.03□□□□□ -0.64
USP54-213ENST00000481991 NME9Q86XW9 330 aa11.03□□□□□ -0.64
USP54-213ENST00000481991 DNAJC5GQ8N7S2 189 aa11.03□□□□□ -0.64
USP54-213ENST00000481991 ERBB3P21860 1342 aa11.03□□□□□ -0.64
USP54-213ENST00000481991 IGSF1Q8N6C5 1336 aa11.03□□□□□ -0.64
USP54-213ENST00000481991 BTAF1O14981 1849 aa11.02□□□□□ -0.64
USP54-213ENST00000481991 NHSQ6T4R5 1651 aa11.02□□□□□ -0.64
USP54-213ENST00000481991 ARHGAP27Q6ZUM4 889 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms