RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 BRWD3Q6RI45 1802 aa16.98■□□□□ 0.31
PTPRF-213ENST00000481019 KIF20BQ96Q89 1820 aa16.98■□□□□ 0.31
PTPRF-213ENST00000481019 KCNH5Q8NCM2 988 aa16.97■□□□□ 0.31
PTPRF-213ENST00000481019 EP400Q96L91 3159 aa16.97■□□□□ 0.31
PTPRF-213ENST00000481019 LTN1O94822 1766 aa16.97■□□□□ 0.31
PTPRF-213ENST00000481019 SPATA31A1Q5TZJ5 1347 aa16.96■□□□□ 0.3
PTPRF-213ENST00000481019 ONECUT3O60422 494 aaPredicted RBP16.95■□□□□ 0.3
PTPRF-213ENST00000481019 FAM98CQ17RN3 349 aaKnown RBP16.95■□□□□ 0.3
PTPRF-213ENST00000481019 PANK3Q9H999 370 aa16.95■□□□□ 0.3
PTPRF-213ENST00000481019 EVA1CP58658 441 aa16.94■□□□□ 0.3
PTPRF-213ENST00000481019 SEPT12Q8IYM1 358 aa16.94■□□□□ 0.3
PTPRF-213ENST00000481019 COG3Q96JB2 828 aa16.94■□□□□ 0.3
PTPRF-213ENST00000481019 USP35Q9P2H5 1018 aa16.93■□□□□ 0.3
PTPRF-213ENST00000481019 THSD7AQ9UPZ6 1657 aa16.93■□□□□ 0.3
PTPRF-213ENST00000481019 WASHC2AQ641Q2 1341 aa16.92■□□□□ 0.3
PTPRF-213ENST00000481019 CCDC7Q96M83 1385 aa16.91■□□□□ 0.3
PTPRF-213ENST00000481019 MAP3K19Q56UN5 1328 aa16.91■□□□□ 0.3
PTPRF-213ENST00000481019 RRS1Q15050 365 aaKnown RBP16.9■□□□□ 0.3
PTPRF-213ENST00000481019 UPF1Q92900 1129 aaKnown RBP eCLIP16.9■□□□□ 0.3
PTPRF-213ENST00000481019 ABCC6O95255 1503 aa16.9■□□□□ 0.3
PTPRF-213ENST00000481019 PEAK1Q9H792 1746 aa16.9■□□□□ 0.3
PTPRF-213ENST00000481019 CRB1P82279 1406 aa16.89■□□□□ 0.29
PTPRF-213ENST00000481019 WDR17Q8IZU2 1322 aa16.89■□□□□ 0.29
PTPRF-213ENST00000481019 A0A0G2JS52 829 aa16.87■□□□□ 0.29
PTPRF-213ENST00000481019 MYT1Q01538 1121 aa16.87■□□□□ 0.29
PTPRF-213ENST00000481019 FAM182BQ5T319 152 aa16.87■□□□□ 0.29
PTPRF-213ENST00000481019 TCP11L2Q8N4U5 519 aa16.87■□□□□ 0.29
PTPRF-213ENST00000481019 IP6K1Q92551 441 aa16.87■□□□□ 0.29
PTPRF-213ENST00000481019 CGNL1Q0VF96 1302 aa16.87■□□□□ 0.29
PTPRF-213ENST00000481019 ANKRD26Q9UPS8 1709 aa16.87■□□□□ 0.29
PTPRF-213ENST00000481019 HOXC9P31274 260 aa16.86■□□□□ 0.29
PTPRF-213ENST00000481019 TOM1L2Q6ZVM7 507 aa16.86■□□□□ 0.29
PTPRF-213ENST00000481019 ERBB3P21860 1342 aa16.86■□□□□ 0.29
PTPRF-213ENST00000481019 WNK3Q9BYP7 1800 aa16.85■□□□□ 0.29
PTPRF-213ENST00000481019 BARGINQ6ZT62 677 aa16.85■□□□□ 0.29
PTPRF-213ENST00000481019 ANKRD24Q8TF21 1146 aa16.85■□□□□ 0.29
PTPRF-213ENST00000481019 CSB-PGBD3P0DP91 1061 aa16.84■□□□□ 0.29
PTPRF-213ENST00000481019 KRT27Q7Z3Y8 459 aa16.84■□□□□ 0.29
PTPRF-213ENST00000481019 LTV1Q96GA3 475 aaPredicted RBP16.84■□□□□ 0.29
PTPRF-213ENST00000481019 EMILIN1Q9Y6C2 1016 aa16.84■□□□□ 0.29
PTPRF-213ENST00000481019 RGPD2P0DJD1 1756 aa16.84■□□□□ 0.29
PTPRF-213ENST00000481019 PER1O15534 1290 aaPredicted RBP16.83■□□□□ 0.28
PTPRF-213ENST00000481019 BLMP54132 1417 aaPredicted RBP16.83■□□□□ 0.28
PTPRF-213ENST00000481019 CARD10Q9BWT7 1032 aa16.83■□□□□ 0.28
PTPRF-213ENST00000481019 PARP4Q9UKK3 1724 aaKnown RBP16.82■□□□□ 0.28
PTPRF-213ENST00000481019 DISP2A7MBM2 1401 aa16.82■□□□□ 0.28
PTPRF-213ENST00000481019 TNNT2P45379 298 aaPredicted RBP16.82■□□□□ 0.28
PTPRF-213ENST00000481019 AMPHP49418 695 aa16.82■□□□□ 0.28
PTPRF-213ENST00000481019 AMER1Q5JTC6 1135 aaPredicted RBP16.82■□□□□ 0.28
PTPRF-213ENST00000481019 THRAP3Q9Y2W1 955 aaKnown RBP16.82■□□□□ 0.28
PTPRF-213ENST00000481019 LRRC37A3O60309 1634 aa16.81■□□□□ 0.28
PTPRF-213ENST00000481019 HSP90AB2PQ58FF8 381 aa16.81■□□□□ 0.28
PTPRF-213ENST00000481019 NLRP2Q9NX02 1062 aa16.81■□□□□ 0.28
PTPRF-213ENST00000481019 MAP2P11137 1827 aaKnown RBP16.81■□□□□ 0.28
PTPRF-213ENST00000481019 RTL1A6NKG5 1358 aa16.8■□□□□ 0.28
PTPRF-213ENST00000481019 FAM208AQ9UK61 1670 aaKnown RBP16.79■□□□□ 0.28
PTPRF-213ENST00000481019 POLKQ9UBT6 870 aa16.79■□□□□ 0.28
PTPRF-213ENST00000481019 KNSTRNQ9Y448 316 aa16.79■□□□□ 0.28
PTPRF-213ENST00000481019 NSD2O96028 1365 aa16.77■□□□□ 0.28
PTPRF-213ENST00000481019 INSRP06213 1382 aa16.77■□□□□ 0.27
PTPRF-213ENST00000481019 FLT4P35916 1363 aa16.77■□□□□ 0.27
PTPRF-213ENST00000481019 PPM1GO15355 546 aaPredicted RBP16.76■□□□□ 0.27
PTPRF-213ENST00000481019 NBPF6Q5VWK0 638 aa16.76■□□□□ 0.27
PTPRF-213ENST00000481019 USHBP1Q8N6Y0 703 aa16.76■□□□□ 0.27
PTPRF-213ENST00000481019 NBPF4Q96M43 638 aa16.76■□□□□ 0.27
PTPRF-213ENST00000481019 CNGB1Q14028 1251 aaPredicted RBP16.75■□□□□ 0.27
PTPRF-213ENST00000481019 MORC1Q86VD1 984 aa16.75■□□□□ 0.27
PTPRF-213ENST00000481019 PDE3BQ13370 1112 aa16.74■□□□□ 0.27
PTPRF-213ENST00000481019 CC2D1BQ5T0F9 858 aaKnown RBP16.74■□□□□ 0.27
PTPRF-213ENST00000481019 MARCH10Q8NA82 808 aaPredicted RBP16.74■□□□□ 0.27
PTPRF-213ENST00000481019 KIF24Q5T7B8 1368 aa16.74■□□□□ 0.27
PTPRF-213ENST00000481019 DDB1Q16531 1140 aa16.73■□□□□ 0.27
PTPRF-213ENST00000481019 SMG6Q86US8 1419 aaKnown RBP16.72■□□□□ 0.27
PTPRF-213ENST00000481019 MEGF6O75095 1541 aa16.72■□□□□ 0.27
PTPRF-213ENST00000481019 TNS1Q9HBL0 1735 aaKnown RBP16.72■□□□□ 0.27
PTPRF-213ENST00000481019 TNS2Q63HR2 1409 aa16.71■□□□□ 0.27
PTPRF-213ENST00000481019 IL2RBP14784 551 aa16.71■□□□□ 0.27
PTPRF-213ENST00000481019 DEFB132Q7Z7B7 95 aa16.71■□□□□ 0.27
PTPRF-213ENST00000481019 TRIM37O94972 964 aa16.7■□□□□ 0.26
PTPRF-213ENST00000481019 EIF4A2Q14240 407 aaKnown RBP16.7■□□□□ 0.26
PTPRF-213ENST00000481019 PTF1AQ7RTS3 328 aa16.7■□□□□ 0.26
PTPRF-213ENST00000481019 CDCA7Q9BWT1 371 aaPredicted RBP16.7■□□□□ 0.26
PTPRF-213ENST00000481019 SHANK3Q9BYB0 1731 aa16.7■□□□□ 0.26
PTPRF-213ENST00000481019 FAM196AQ6ZSG2 479 aa16.69■□□□□ 0.26
PTPRF-213ENST00000481019 NCAPD2Q15021 1401 aa16.69■□□□□ 0.26
PTPRF-213ENST00000481019 SBF2Q86WG5 1849 aa16.68■□□□□ 0.26
PTPRF-213ENST00000481019 RGPD1P0DJD0 1748 aa16.68■□□□□ 0.26
PTPRF-213ENST00000481019 NPC1L1Q9UHC9 1359 aa16.68■□□□□ 0.26
PTPRF-213ENST00000481019 EXOC5O00471 708 aa16.68■□□□□ 0.26
PTPRF-213ENST00000481019 EYA1Q99502 592 aa16.68■□□□□ 0.26
PTPRF-213ENST00000481019 CCDC125Q86Z20 511 aa16.67■□□□□ 0.26
PTPRF-213ENST00000481019 OVOS2A0A0G2JMS6 1433 aa16.67■□□□□ 0.26
PTPRF-213ENST00000481019 ZNF316A6NFI3 1004 aaPredicted RBP16.66■□□□□ 0.26
PTPRF-213ENST00000481019 MTHFSP49914 203 aa16.65■□□□□ 0.26
PTPRF-213ENST00000481019 KCNQ2O43526 872 aa16.63■□□□□ 0.25
PTPRF-213ENST00000481019 EN1Q05925 392 aaPredicted RBP16.63■□□□□ 0.25
PTPRF-213ENST00000481019 DDX54Q8TDD1 881 aaKnown RBP16.63■□□□□ 0.25
PTPRF-213ENST00000481019 BCL9O00512 1426 aa16.62■□□□□ 0.25
PTPRF-213ENST00000481019 IL13P35225 146 aa16.62■□□□□ 0.25
PTPRF-213ENST00000481019 DDX10Q13206 875 aaKnown RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms