RNA–Protein interactions for RNA: ENST00000479300.1

VCP-205, Transcript of valosin containing protein, humanhuman

TSL 1 (best)

Gene VCP, Length 559 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-205ENST00000479300 UTRNP46939 3433 aa9.69□□□□□ -0.86
VCP-205ENST00000479300 PPP1R1BQ9UD71 204 aaPredicted RBP9.69□□□□□ -0.86
VCP-205ENST00000479300 THRAP3Q9Y2W1 955 aaKnown RBP9.69□□□□□ -0.86
VCP-205ENST00000479300 PLSCR1O15162 318 aa9.68□□□□□ -0.86
VCP-205ENST00000479300 MARCH10Q8NA82 808 aaPredicted RBP9.68□□□□□ -0.86
VCP-205ENST00000479300 PIK3C2AO00443 1686 aa9.67□□□□□ -0.86
VCP-205ENST00000479300 PPIP5K1Q6PFW1 1433 aa9.67□□□□□ -0.86
VCP-205ENST00000479300 AATKQ6ZMQ8 1374 aa9.67□□□□□ -0.86
VCP-205ENST00000479300 ZBTB7AO95365 584 aa9.67□□□□□ -0.86
VCP-205ENST00000479300 NBPF1Q3BBV0 1214 aa9.67□□□□□ -0.86
VCP-205ENST00000479300 AXIN2Q9Y2T1 843 aa9.67□□□□□ -0.86
VCP-205ENST00000479300 KIAA1210Q9ULL0 1709 aa9.66□□□□□ -0.86
VCP-205ENST00000479300 NLRP13Q86W25 1043 aa9.66□□□□□ -0.86
VCP-205ENST00000479300 ZNF784Q8NCA9 323 aaPredicted RBP9.66□□□□□ -0.86
VCP-205ENST00000479300 BCL11BQ9C0K0 894 aaPredicted RBP9.66□□□□□ -0.86
VCP-205ENST00000479300 BCL9O00512 1426 aa9.65□□□□□ -0.86
VCP-205ENST00000479300 USP6P35125 1406 aa9.65□□□□□ -0.86
VCP-205ENST00000479300 STAC3Q96MF2 364 aa9.65□□□□□ -0.86
VCP-205ENST00000479300 SGIP1Q9BQI5 828 aa9.65□□□□□ -0.86
VCP-205ENST00000479300 CABP2Q9NPB3 220 aa9.65□□□□□ -0.86
VCP-205ENST00000479300 ATF5Q9Y2D1 282 aaPredicted RBP9.65□□□□□ -0.86
VCP-205ENST00000479300 RGPD5Q99666 1765 aa9.65□□□□□ -0.87
VCP-205ENST00000479300 ZBTB7CA1YPR0 619 aa9.64□□□□□ -0.87
VCP-205ENST00000479300 DDB1Q16531 1140 aa9.64□□□□□ -0.87
VCP-205ENST00000479300 AKAP12Q02952 1782 aa9.64□□□□□ -0.87
VCP-205ENST00000479300 CPSF1Q10570 1443 aaKnown RBP9.64□□□□□ -0.87
VCP-205ENST00000479300 PAPPAQ13219 1627 aa9.64□□□□□ -0.87
VCP-205ENST00000479300 WDR17Q8IZU2 1322 aa9.63□□□□□ -0.87
VCP-205ENST00000479300 C11orf95C9JLR9 678 aaPredicted RBP9.63□□□□□ -0.87
VCP-205ENST00000479300 NLRP6P59044 892 aa9.63□□□□□ -0.87
VCP-205ENST00000479300 SYT17Q9BSW7 474 aa9.63□□□□□ -0.87
VCP-205ENST00000479300 FHDC1Q9C0D6 1143 aaPredicted RBP9.63□□□□□ -0.87
VCP-205ENST00000479300 CABP1Q9NZU7 370 aa9.63□□□□□ -0.87
VCP-205ENST00000479300 QRICH2Q9H0J4 1663 aa9.63□□□□□ -0.87
VCP-205ENST00000479300 BRD4O60885 1362 aaPredicted RBP9.63□□□□□ -0.87
VCP-205ENST00000479300 NFAT5O94916 1531 aa9.62□□□□□ -0.87
VCP-205ENST00000479300 SRPK2P78362 688 aaKnown RBP9.62□□□□□ -0.87
VCP-205ENST00000479300 TXNRD1Q16881 649 aa9.62□□□□□ -0.87
VCP-205ENST00000479300 TOM1L2Q6ZVM7 507 aa9.62□□□□□ -0.87
VCP-205ENST00000479300 ARHGEF25Q86VW2 580 aa9.62□□□□□ -0.87
VCP-205ENST00000479300 CENPJQ9HC77 1338 aaPredicted RBP9.61□□□□□ -0.87
VCP-205ENST00000479300 TRPM1Q7Z4N2 1603 aa9.61□□□□□ -0.87
VCP-205ENST00000479300 SLC15A2Q16348 729 aa9.61□□□□□ -0.87
VCP-205ENST00000479300 NHSQ6T4R5 1651 aa9.61□□□□□ -0.87
VCP-205ENST00000479300 DCAF8L1A6NGE4 600 aa9.6□□□□□ -0.87
VCP-205ENST00000479300 CARD10Q9BWT7 1032 aa9.6□□□□□ -0.87
VCP-205ENST00000479300 TNS2Q63HR2 1409 aa9.59□□□□□ -0.87
VCP-205ENST00000479300 CHD4Q14839 1912 aa9.59□□□□□ -0.87
VCP-205ENST00000479300 MTFR1LQ9H019 292 aa9.59□□□□□ -0.87
VCP-205ENST00000479300 STK32BQ9NY57 414 aa9.59□□□□□ -0.87
VCP-205ENST00000479300 TTC21BQ7Z4L5 1316 aa9.58□□□□□ -0.88
VCP-205ENST00000479300 ABCC6O95255 1503 aa9.58□□□□□ -0.88
VCP-205ENST00000479300 SOX12O15370 315 aa9.58□□□□□ -0.88
VCP-205ENST00000479300 MYCNP04198 464 aaPredicted RBP9.58□□□□□ -0.88
VCP-205ENST00000479300 C1QTNF8P60827 252 aa9.58□□□□□ -0.88
VCP-205ENST00000479300 ZNF827Q17R98 1081 aa9.58□□□□□ -0.88
VCP-205ENST00000479300 CDCA7Q9BWT1 371 aaPredicted RBP9.58□□□□□ -0.88
VCP-205ENST00000479300 MAP3K5Q99683 1374 aa9.58□□□□□ -0.88
VCP-205ENST00000479300 COL24A1Q17RW2 1714 aa9.57□□□□□ -0.88
VCP-205ENST00000479300 BTAF1O14981 1849 aa9.57□□□□□ -0.88
VCP-205ENST00000479300 SENP3-EIF4A1A0A087X0R7 540 aa9.57□□□□□ -0.88
VCP-205ENST00000479300 ACSBG1Q96GR2 724 aa9.57□□□□□ -0.88
VCP-205ENST00000479300 LRRC4BQ9NT99 713 aa9.57□□□□□ -0.88
VCP-205ENST00000479300 CEP350Q5VT06 3117 aa9.57□□□□□ -0.88
VCP-205ENST00000479300 GOLGB1Q14789 3259 aaKnown RBP9.57□□□□□ -0.88
VCP-205ENST00000479300 ARXQ96QS3 562 aa9.56□□□□□ -0.88
VCP-205ENST00000479300 USP54Q70EL1 1684 aa9.55□□□□□ -0.88
VCP-205ENST00000479300 CCDC7Q96M83 1385 aa9.55□□□□□ -0.88
VCP-205ENST00000479300 TUBGCP6Q96RT7 1819 aa9.55□□□□□ -0.88
VCP-205ENST00000479300 EXOC5O00471 708 aa9.55□□□□□ -0.88
VCP-205ENST00000479300 CSB-PGBD3P0DP91 1061 aa9.55□□□□□ -0.88
VCP-205ENST00000479300 SHANK3Q9BYB0 1731 aa9.55□□□□□ -0.88
VCP-205ENST00000479300 MON2Q7Z3U7 1717 aa9.54□□□□□ -0.88
VCP-205ENST00000479300 ERBB3P21860 1342 aa9.54□□□□□ -0.88
VCP-205ENST00000479300 QSER1Q2KHR3 1735 aa9.53□□□□□ -0.88
VCP-205ENST00000479300 CD163L1Q9NR16 1453 aa9.53□□□□□ -0.88
VCP-205ENST00000479300 KCNH5Q8NCM2 988 aa9.53□□□□□ -0.88
VCP-205ENST00000479300 AKT1S1Q96B36 256 aa9.53□□□□□ -0.88
VCP-205ENST00000479300 EVC2Q86UK5 1308 aa9.53□□□□□ -0.88
VCP-205ENST00000479300 TTC21AQ8NDW8 1320 aa9.53□□□□□ -0.88
VCP-205ENST00000479300 LTN1O94822 1766 aa9.52□□□□□ -0.88
VCP-205ENST00000479300 KCNQ4P56696 695 aa9.52□□□□□ -0.89
VCP-205ENST00000479300 NLGN2Q8NFZ4 835 aa9.52□□□□□ -0.89
VCP-205ENST00000479300 PNPLA7Q6ZV29 1317 aa9.52□□□□□ -0.89
VCP-205ENST00000479300 USP31Q70CQ4 1352 aa9.51□□□□□ -0.89
VCP-205ENST00000479300 KTN1Q86UP2 1357 aaKnown RBP9.51□□□□□ -0.89
VCP-205ENST00000479300 SBNO2Q9Y2G9 1366 aa9.51□□□□□ -0.89
VCP-205ENST00000479300 NME9Q86XW9 330 aa9.51□□□□□ -0.89
VCP-205ENST00000479300 L3MBTL2Q969R5 705 aa9.51□□□□□ -0.89
VCP-205ENST00000479300 ZNF692Q9BU19 519 aaPredicted RBP9.51□□□□□ -0.89
VCP-205ENST00000479300 NSD2O96028 1365 aa9.5□□□□□ -0.89
VCP-205ENST00000479300 IL2RBP14784 551 aa9.5□□□□□ -0.89
VCP-205ENST00000479300 YBX3P16989 372 aaKnown RBP eCLIP9.5□□□□□ -0.891e-10■■□□□ 14.1
VCP-205ENST00000479300 GPR162Q16538 588 aa9.5□□□□□ -0.89
VCP-205ENST00000479300 NLRP2Q9NX02 1062 aa9.5□□□□□ -0.89
VCP-205ENST00000479300 IFFO2Q5TF58 517 aa9.49□□□□□ -0.89
VCP-205ENST00000479300 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.49□□□□□ -0.89
VCP-205ENST00000479300 ANKRD24Q8TF21 1146 aa9.49□□□□□ -0.89
VCP-205ENST00000479300 FAM208AQ9UK61 1670 aaKnown RBP9.48□□□□□ -0.89
VCP-205ENST00000479300 LY75O60449 1722 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms