RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 CARD14Q9BXL6 1004 aa9.54□□□□□ -0.88
CCDC88A-212ENST00000474059 PPP1R26Q5T8A7 1209 aaPredicted RBP9.53□□□□□ -0.88
CCDC88A-212ENST00000474059 GPKOWQ92917 476 aaPredicted RBP eCLIP9.53□□□□□ -0.88
CCDC88A-212ENST00000474059 EMILIN1Q9Y6C2 1016 aa9.53□□□□□ -0.88
CCDC88A-212ENST00000474059 TSEN34Q9BSV6 310 aaKnown RBP9.52□□□□□ -0.89
CCDC88A-212ENST00000474059 TTLL8A6PVC2 850 aa9.5□□□□□ -0.89
CCDC88A-212ENST00000474059 SPINT1O43278 529 aa9.5□□□□□ -0.89
CCDC88A-212ENST00000474059 UPP2O95045 317 aa9.5□□□□□ -0.89
CCDC88A-212ENST00000474059 PTSQ03393 145 aa9.5□□□□□ -0.89
CCDC88A-212ENST00000474059 PDXDC2PQ6P474 469 aa9.5□□□□□ -0.89
CCDC88A-212ENST00000474059 PROCA1Q8NCQ7 364 aaPredicted RBP9.49□□□□□ -0.89
CCDC88A-212ENST00000474059 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.49□□□□□ -0.89
CCDC88A-212ENST00000474059 FKBPLQ9UIM3 349 aa9.49□□□□□ -0.89
CCDC88A-212ENST00000474059 NR6A1Q15406 480 aa9.48□□□□□ -0.89
CCDC88A-212ENST00000474059 INTS6LQ5JSJ4 861 aaKnown RBP9.48□□□□□ -0.89
CCDC88A-212ENST00000474059 KCTD15Q96SI1 283 aaPredicted RBP9.48□□□□□ -0.89
CCDC88A-212ENST00000474059 FIGNL2A6NMB9 653 aa9.47□□□□□ -0.89
CCDC88A-212ENST00000474059 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.47□□□□□ -0.896e-6■□□□□ 8.6
CCDC88A-212ENST00000474059 RNFT1Q5M7Z0 435 aa9.47□□□□□ -0.89
CCDC88A-212ENST00000474059 EPS8L1Q8TE68 723 aa9.47□□□□□ -0.89
CCDC88A-212ENST00000474059 AGBL1Q96MI9 1066 aa9.47□□□□□ -0.89
CCDC88A-212ENST00000474059 ARHGAP9Q9BRR9 750 aa9.47□□□□□ -0.89
CCDC88A-212ENST00000474059 SLC35F4A4IF30 521 aa9.46□□□□□ -0.9
CCDC88A-212ENST00000474059 KCNMA1Q12791 1236 aa9.46□□□□□ -0.9
CCDC88A-212ENST00000474059 PPP2R2DQ66LE6 453 aa9.46□□□□□ -0.9
CCDC88A-212ENST00000474059 NANOS1Q8WY41 292 aaKnown RBP9.46□□□□□ -0.9
CCDC88A-212ENST00000474059 RSPH6AQ9H0K4 717 aa9.46□□□□□ -0.9
CCDC88A-212ENST00000474059 SH3D19Q5HYK7 790 aa9.45□□□□□ -0.9
CCDC88A-212ENST00000474059 CNTNAP3BQ96NU0 1288 aa9.45□□□□□ -0.9
CCDC88A-212ENST00000474059 CNTNAP3Q9BZ76 1288 aa9.45□□□□□ -0.9
CCDC88A-212ENST00000474059 CTSOP43234 321 aaPredicted RBP9.44□□□□□ -0.9
CCDC88A-212ENST00000474059 CCDC155Q8N6L0 562 aa9.44□□□□□ -0.9
CCDC88A-212ENST00000474059 KDF1Q8NAX2 398 aaPredicted RBP9.44□□□□□ -0.9
CCDC88A-212ENST00000474059 GPBP1L1Q9HC44 474 aaPredicted RBP9.44□□□□□ -0.9
CCDC88A-212ENST00000474059 HMX1Q9NP08 348 aaPredicted RBP9.44□□□□□ -0.9
CCDC88A-212ENST00000474059 SENP3-EIF4A1A0A087X0R7 540 aa9.43□□□□□ -0.9
CCDC88A-212ENST00000474059 SKIV2LQ15477 1246 aaKnown RBP9.43□□□□□ -0.9
CCDC88A-212ENST00000474059 SLC10A4Q96EP9 437 aa9.43□□□□□ -0.9
CCDC88A-212ENST00000474059 COL25A1Q9BXS0 654 aaPredicted RBP9.43□□□□□ -0.9
CCDC88A-212ENST00000474059 PGPEP1Q9NXJ5 209 aa9.43□□□□□ -0.9
CCDC88A-212ENST00000474059 ZC3H4Q9UPT8 1303 aaKnown RBP9.42□□□□□ -0.9
CCDC88A-212ENST00000474059 FAM117AQ9C073 453 aa9.42□□□□□ -0.9
CCDC88A-212ENST00000474059 LILRA1O75019 489 aa9.41□□□□□ -0.9
CCDC88A-212ENST00000474059 ZNF385CQ66K41 422 aaPredicted RBP9.41□□□□□ -0.9
CCDC88A-212ENST00000474059 ADAM32Q8TC27 787 aa9.41□□□□□ -0.9
CCDC88A-212ENST00000474059 WHAMMQ8TF30 809 aa9.41□□□□□ -0.9
CCDC88A-212ENST00000474059 INSM2Q96T92 566 aaPredicted RBP9.41□□□□□ -0.9
CCDC88A-212ENST00000474059 TMPRSS4Q9NRS4 437 aa9.41□□□□□ -0.9
CCDC88A-212ENST00000474059 RNF217Q8TC41 542 aa9.4□□□□□ -0.9
CCDC88A-212ENST00000474059 KDM4CQ9H3R0 1056 aa9.4□□□□□ -0.9
CCDC88A-212ENST00000474059 CDV3Q9UKY7 258 aaKnown RBP9.4□□□□□ -0.9
CCDC88A-212ENST00000474059 ADD1P35611 737 aaKnown RBP9.39□□□□□ -0.91
CCDC88A-212ENST00000474059 RELBQ01201 579 aa9.39□□□□□ -0.91
CCDC88A-212ENST00000474059 FOXD4L5Q5VV16 416 aaPredicted RBP9.39□□□□□ -0.91
CCDC88A-212ENST00000474059 ITGA6P23229 1130 aa9.38□□□□□ -0.91
CCDC88A-212ENST00000474059 ZBTB33Q86T24 672 aa9.38□□□□□ -0.91
CCDC88A-212ENST00000474059 KCTD17Q8N5Z5 321 aa9.38□□□□□ -0.91
CCDC88A-212ENST00000474059 ZNF784Q8NCA9 323 aaPredicted RBP9.38□□□□□ -0.91
CCDC88A-212ENST00000474059 ADAMTS8Q9UP79 889 aa9.38□□□□□ -0.91
CCDC88A-212ENST00000474059 GPSM3Q9Y4H4 160 aa9.38□□□□□ -0.91
CCDC88A-212ENST00000474059 SLURP2P0DP57 97 aa9.37□□□□□ -0.91
CCDC88A-212ENST00000474059 DHX9Q08211 1270 aaKnown RBP9.37□□□□□ -0.91
CCDC88A-212ENST00000474059 ZNF395Q9H8N7 513 aaPredicted RBP9.37□□□□□ -0.91
CCDC88A-212ENST00000474059 ESPNB1AK53 854 aa9.36□□□□□ -0.91
CCDC88A-212ENST00000474059 AP1G2O75843 785 aa9.36□□□□□ -0.91
CCDC88A-212ENST00000474059 ARHGEF15O94989 841 aa9.36□□□□□ -0.91
CCDC88A-212ENST00000474059 PTK2Q05397 1052 aa9.36□□□□□ -0.91
CCDC88A-212ENST00000474059 VWA5B2Q8N398 1253 aa9.36□□□□□ -0.91
CCDC88A-212ENST00000474059 ERVH48-1M5A8F1 160 aa9.35□□□□□ -0.91
CCDC88A-212ENST00000474059 TRIM34Q9BYJ4 488 aa9.35□□□□□ -0.91
CCDC88A-212ENST00000474059 CUEDC1Q9NWM3 386 aaPredicted RBP9.35□□□□□ -0.91
CCDC88A-212ENST00000474059 ADH1AP07327 375 aa9.34□□□□□ -0.91
CCDC88A-212ENST00000474059 USP17L8P0C7I0 530 aa9.34□□□□□ -0.91
CCDC88A-212ENST00000474059 RASSF7Q02833 373 aa9.34□□□□□ -0.91
CCDC88A-212ENST00000474059 GAS6Q14393 721 aa9.32□□□□□ -0.92
CCDC88A-212ENST00000474059 SUZ12Q15022 739 aaKnown RBP9.32□□□□□ -0.92
CCDC88A-212ENST00000474059 POLMQ9NP87 494 aaPredicted RBP9.32□□□□□ -0.92
CCDC88A-212ENST00000474059 PTGIRP43119 386 aa9.31□□□□□ -0.92
CCDC88A-212ENST00000474059 RAB15P59190 212 aa9.31□□□□□ -0.92
CCDC88A-212ENST00000474059 DDRGK1Q96HY6 314 aa9.31□□□□□ -0.92
CCDC88A-212ENST00000474059 CDC14CA4D256 554 aa9.3□□□□□ -0.92
CCDC88A-212ENST00000474059 NBPF20Q3BBV1 942 aa9.3□□□□□ -0.92
CCDC88A-212ENST00000474059 RFC5P40937 340 aa9.29□□□□□ -0.92
CCDC88A-212ENST00000474059 SV2AQ7L0J3 742 aa9.29□□□□□ -0.92
CCDC88A-212ENST00000474059 TMEM151AQ8N4L1 468 aa9.29□□□□□ -0.92
CCDC88A-212ENST00000474059 GDF11O95390 407 aa9.28□□□□□ -0.92
CCDC88A-212ENST00000474059 SVOPQ8N4V2 548 aa9.28□□□□□ -0.92
CCDC88A-212ENST00000474059 LYPD4Q6UWN0 246 aa9.27□□□□□ -0.93
CCDC88A-212ENST00000474059 CYLDQ9NQC7 956 aa9.27□□□□□ -0.93
CCDC88A-212ENST00000474059 ADAMTS2O95450 1211 aa9.26□□□□□ -0.93
CCDC88A-212ENST00000474059 DZIP3Q86Y13 1208 aaKnown RBP9.26□□□□□ -0.93
CCDC88A-212ENST00000474059 GJD4Q96KN9 370 aaPredicted RBP9.26□□□□□ -0.93
CCDC88A-212ENST00000474059 GPR37L1O60883 481 aa9.24□□□□□ -0.93
CCDC88A-212ENST00000474059 RHOQP17081 205 aa9.24□□□□□ -0.93
CCDC88A-212ENST00000474059 RNF144AP50876 292 aaPredicted RBP9.24□□□□□ -0.93
CCDC88A-212ENST00000474059 GIGYF1O75420 1035 aaPredicted RBP9.23□□□□□ -0.93
CCDC88A-212ENST00000474059 LYSMD3Q7Z3D4 306 aa9.23□□□□□ -0.93
CCDC88A-212ENST00000474059 SEPT12Q8IYM1 358 aa9.23□□□□□ -0.93
CCDC88A-212ENST00000474059 ZNF837Q96EG3 531 aaPredicted RBP9.23□□□□□ -0.93
CCDC88A-212ENST00000474059 RNF225M0QZC1 329 aaPredicted RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms