RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044		A0A0G2JS52	829 aa		7.27	□□□□□ -1.25
PTCD3-209	ENST00000472044	SKI	P12755	728 aa		7.27	□□□□□ -1.25
PTCD3-209	ENST00000472044	RFX1	P22670	979 aa		7.27	□□□□□ -1.25
PTCD3-209	ENST00000472044	SLC19A1	P41440	591 aa		7.27	□□□□□ -1.25
PTCD3-209	ENST00000472044	NBPF20	Q3BBV1	942 aa		7.27	□□□□□ -1.25
PTCD3-209	ENST00000472044	MAP7D1	Q3KQU3	841 aa		7.27	□□□□□ -1.25
PTCD3-209	ENST00000472044	RNF20	Q5VTR2	975 aa		7.27	□□□□□ -1.25
PTCD3-209	ENST00000472044	RNF135	Q8IUD6	432 aa		7.27	□□□□□ -1.25
PTCD3-209	ENST00000472044	SEPT12	Q8IYM1	358 aa		7.27	□□□□□ -1.25
PTCD3-209	ENST00000472044	ACIN1	Q9UKV3	1341 aa	Known RBP	7.27	□□□□□ -1.25
PTCD3-209	ENST00000472044	RC3H1	Q5TC82	1133 aa	Known RBP	7.26	□□□□□ -1.25
PTCD3-209	ENST00000472044	TRAF7	Q6Q0C0	670 aa		7.26	□□□□□ -1.25
PTCD3-209	ENST00000472044	PLPP7	Q8NBV4	271 aa		7.26	□□□□□ -1.25
PTCD3-209	ENST00000472044	CDK15	Q96Q40	435 aa		7.26	□□□□□ -1.25
PTCD3-209	ENST00000472044	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	7.25	□□□□□ -1.25
PTCD3-209	ENST00000472044	USP17L5	A8MUK1	530 aa		7.25	□□□□□ -1.25
PTCD3-209	ENST00000472044	SIAH2	O43255	324 aa		7.25	□□□□□ -1.25
PTCD3-209	ENST00000472044	GIGYF1	O75420	1035 aa	Predicted RBP	7.25	□□□□□ -1.25
PTCD3-209	ENST00000472044	KANK4	Q5T7N3	995 aa	Predicted RBP	7.25	□□□□□ -1.25
PTCD3-209	ENST00000472044	EHBP1	Q8NDI1	1231 aa		7.25	□□□□□ -1.25
PTCD3-209	ENST00000472044	USP17L3	A6NCW0	530 aa		7.24	□□□□□ -1.25
PTCD3-209	ENST00000472044	USP17L4	A6NCW7	530 aa		7.24	□□□□□ -1.25
PTCD3-209	ENST00000472044	WNT7A	O00755	349 aa		7.24	□□□□□ -1.25
PTCD3-209	ENST00000472044	ATG7	O95352	703 aa		7.24	□□□□□ -1.25
PTCD3-209	ENST00000472044	SPRYD7	Q5W111	196 aa		7.24	□□□□□ -1.25
PTCD3-209	ENST00000472044	USP17L2	Q6R6M4	530 aa		7.24	□□□□□ -1.25
PTCD3-209	ENST00000472044	USP17L1	Q7RTZ2	530 aa		7.24	□□□□□ -1.25
PTCD3-209	ENST00000472044	KCTD15	Q96SI1	283 aa	Predicted RBP	7.24	□□□□□ -1.25
PTCD3-209	ENST00000472044	VRTN	Q9H8Y1	702 aa		7.24	□□□□□ -1.25
PTCD3-209	ENST00000472044	CCDC85A	Q96PX6	553 aa	Predicted RBP	7.23	□□□□□ -1.25
PTCD3-209	ENST00000472044		V9GY48	417 aa	Predicted RBP	7.23	□□□□□ -1.25
PTCD3-209	ENST00000472044	NCOA4	Q13772	614 aa		7.22	□□□□□ -1.25
PTCD3-209	ENST00000472044	ELOA	Q14241	798 aa	Known RBP	7.22	□□□□□ -1.25
PTCD3-209	ENST00000472044	TSGA10IP	Q3SY00	556 aa		7.22	□□□□□ -1.25
PTCD3-209	ENST00000472044	VASH1	Q7L8A9	365 aa	Predicted RBP	7.22	□□□□□ -1.25
PTCD3-209	ENST00000472044	ZNF598	Q86UK7	904 aa	Known RBP	7.22	□□□□□ -1.25
PTCD3-209	ENST00000472044	ATP5J2-PTCD1	G3V325	749 aa		7.21	□□□□□ -1.26
PTCD3-209	ENST00000472044	GRM5	P41594	1212 aa		7.21	□□□□□ -1.26
PTCD3-209	ENST00000472044	PDE4C	Q08493	712 aa		7.21	□□□□□ -1.26
PTCD3-209	ENST00000472044	EML3	Q32P44	896 aa		7.21	□□□□□ -1.26
PTCD3-209	ENST00000472044	RETREG2	Q8NC44	543 aa		7.21	□□□□□ -1.26
PTCD3-209	ENST00000472044	MKRN1	Q9UHC7	482 aa	Known RBP	7.21	□□□□□ -1.26
PTCD3-209	ENST00000472044	DOLK	Q9UPQ8	538 aa		7.21	□□□□□ -1.26
PTCD3-209	ENST00000472044	FAM196B	A6NMK8	535 aa		7.2	□□□□□ -1.26
PTCD3-209	ENST00000472044	INTS6L	Q5JSJ4	861 aa	Known RBP	7.2	□□□□□ -1.26
PTCD3-209	ENST00000472044	DEPDC4	Q8N2C3	294 aa		7.2	□□□□□ -1.26
PTCD3-209	ENST00000472044	MRGPRX2	Q96LB1	330 aa		7.2	□□□□□ -1.26
PTCD3-209	ENST00000472044	TRAIP	Q9BWF2	469 aa		7.2	□□□□□ -1.26
PTCD3-209	ENST00000472044	PDIA4	P13667	645 aa	Known RBP	7.19	□□□□□ -1.26
PTCD3-209	ENST00000472044	ZNF697	Q5TEC3	545 aa		7.19	□□□□□ -1.26
PTCD3-209	ENST00000472044	SIRT1	Q96EB6	747 aa		7.19	□□□□□ -1.26
PTCD3-209	ENST00000472044	PRKD2	Q9BZL6	878 aa		7.19	□□□□□ -1.26
PTCD3-209	ENST00000472044	UST	Q9Y2C2	406 aa		7.19	□□□□□ -1.26
PTCD3-209	ENST00000472044	ADH1C	P00326	375 aa		7.18	□□□□□ -1.26
PTCD3-209	ENST00000472044	DHX9	Q08211	1270 aa	Known RBP	7.18	□□□□□ -1.26
PTCD3-209	ENST00000472044	USP4	Q13107	963 aa		7.18	□□□□□ -1.26
PTCD3-209	ENST00000472044	NR5A1	Q13285	461 aa		7.18	□□□□□ -1.26
PTCD3-209	ENST00000472044	CDCA8	Q53HL2	280 aa		7.18	□□□□□ -1.26
PTCD3-209	ENST00000472044	TRIM50	Q86XT4	487 aa		7.18	□□□□□ -1.26
PTCD3-209	ENST00000472044	TRIM52	Q96A61	297 aa		7.18	□□□□□ -1.26
PTCD3-209	ENST00000472044	CDCA7	Q9BWT1	371 aa	Predicted RBP	7.18	□□□□□ -1.26
PTCD3-209	ENST00000472044	PKD2L1	Q9P0L9	805 aa		7.18	□□□□□ -1.26
PTCD3-209	ENST00000472044	NOD1	Q9Y239	953 aa		7.18	□□□□□ -1.26
PTCD3-209	ENST00000472044	ERVH48-1	M5A8F1	160 aa		7.17	□□□□□ -1.26
PTCD3-209	ENST00000472044	CSB-PGBD3	P0DP91	1061 aa		7.17	□□□□□ -1.26
PTCD3-209	ENST00000472044	ATP1A2	P50993	1020 aa		7.17	□□□□□ -1.26
PTCD3-209	ENST00000472044	PTK7	Q13308	1070 aa		7.17	□□□□□ -1.26
PTCD3-209	ENST00000472044	ARID5B	Q14865	1188 aa		7.17	□□□□□ -1.26
PTCD3-209	ENST00000472044	PCDHB11	Q9Y5F2	797 aa		7.17	□□□□□ -1.26
PTCD3-209	ENST00000472044	TLL2	Q9Y6L7	1015 aa		7.17	□□□□□ -1.26
PTCD3-209	ENST00000472044	GDF9	O60383	454 aa		7.16	□□□□□ -1.26
PTCD3-209	ENST00000472044	RASA1	P20936	1047 aa		7.16	□□□□□ -1.26
PTCD3-209	ENST00000472044	FSHR	P23945	695 aa		7.16	□□□□□ -1.26
PTCD3-209	ENST00000472044	CRTC2	Q53ET0	693 aa	Predicted RBP	7.16	□□□□□ -1.26
PTCD3-209	ENST00000472044	OXLD1	Q5BKU9	147 aa		7.16	□□□□□ -1.26
PTCD3-209	ENST00000472044	LARP1	Q6PKG0	1096 aa	Known RBP	7.16	□□□□□ -1.26
PTCD3-209	ENST00000472044	LARGE2	Q8N3Y3	721 aa		7.16	□□□□□ -1.26
PTCD3-209	ENST00000472044	OGFOD1	Q8N543	542 aa		7.16	□□□□□ -1.26
PTCD3-209	ENST00000472044	TMEM88B	A6NKF7	163 aa		7.15	□□□□□ -1.26
PTCD3-209	ENST00000472044	USP17L15	C9J2P7	530 aa		7.15	□□□□□ -1.26
PTCD3-209	ENST00000472044	USP17L10	C9JJH3	530 aa		7.15	□□□□□ -1.26
PTCD3-209	ENST00000472044	USP17L13	C9JLJ4	530 aa		7.15	□□□□□ -1.26
PTCD3-209	ENST00000472044	USP17L12	C9JPN9	530 aa		7.15	□□□□□ -1.26
PTCD3-209	ENST00000472044	USP17L11	C9JVI0	530 aa		7.15	□□□□□ -1.26
PTCD3-209	ENST00000472044	USP17L21	D6R901	530 aa		7.15	□□□□□ -1.26
PTCD3-209	ENST00000472044	USP17L18	D6R9N7	530 aa		7.15	□□□□□ -1.26
PTCD3-209	ENST00000472044	USP17L22	D6RA61	530 aa		7.15	□□□□□ -1.26
PTCD3-209	ENST00000472044	USP17L17	D6RBQ6	530 aa		7.15	□□□□□ -1.26
PTCD3-209	ENST00000472044	USP17L19	D6RCP7	530 aa		7.15	□□□□□ -1.26
PTCD3-209	ENST00000472044	USP17L20	D6RJB6	530 aa		7.15	□□□□□ -1.26
PTCD3-209	ENST00000472044	ZBTB7B	O15156	539 aa	Predicted RBP	7.15	□□□□□ -1.26
PTCD3-209	ENST00000472044	ERVK-9	P63128	1117 aa		7.15	□□□□□ -1.26
PTCD3-209	ENST00000472044	CLDN10	P78369	228 aa		7.15	□□□□□ -1.26
PTCD3-209	ENST00000472044	USP17L24	Q0WX57	530 aa		7.15	□□□□□ -1.26
PTCD3-209	ENST00000472044	CCDC116	Q8IYX3	515 aa		7.15	□□□□□ -1.26
PTCD3-209	ENST00000472044	SNIP1	Q8TAD8	396 aa	Known RBP	7.15	□□□□□ -1.26
PTCD3-209	ENST00000472044	ZMIZ1	Q9ULJ6	1067 aa		7.15	□□□□□ -1.26
PTCD3-209	ENST00000472044	PCDHGA11	Q9Y5H2	935 aa		7.15	□□□□□ -1.26
PTCD3-209	ENST00000472044	RGS20	O76081	388 aa		7.14	□□□□□ -1.27
PTCD3-209	ENST00000472044	DKK1	O94907	266 aa		7.14	□□□□□ -1.27

Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms