RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 KIF20BQ96Q89 1820 aa21.03■□□□□ 0.96
SDC3-203ENST00000471567 GLI3P10071 1580 aa21.02■□□□□ 0.96
SDC3-203ENST00000471567 ONECUT3O60422 494 aaPredicted RBP21.02■□□□□ 0.96
SDC3-203ENST00000471567 AXIN2Q9Y2T1 843 aa21.02■□□□□ 0.96
SDC3-203ENST00000471567 RGS12O14924 1447 aa21.02■□□□□ 0.96
SDC3-203ENST00000471567 COL5A2P05997 1499 aaPredicted RBP21.01■□□□□ 0.95
SDC3-203ENST00000471567 SOCS7O14512 581 aa21.01■□□□□ 0.95
SDC3-203ENST00000471567 KNSTRNQ9Y448 316 aa21■□□□□ 0.95
SDC3-203ENST00000471567 SPATA31A1Q5TZJ5 1347 aa21■□□□□ 0.95
SDC3-203ENST00000471567 LARP1Q6PKG0 1096 aaKnown RBP20.99■□□□□ 0.95
SDC3-203ENST00000471567 NSD2O96028 1365 aa20.97■□□□□ 0.95
SDC3-203ENST00000471567 IP6K1Q92551 441 aa20.97■□□□□ 0.95
SDC3-203ENST00000471567 MAP3K19Q56UN5 1328 aa20.97■□□□□ 0.95
SDC3-203ENST00000471567 WDR17Q8IZU2 1322 aa20.97■□□□□ 0.95
SDC3-203ENST00000471567 LTN1O94822 1766 aa20.96■□□□□ 0.95
SDC3-203ENST00000471567 THRAP3Q9Y2W1 955 aaKnown RBP20.96■□□□□ 0.95
SDC3-203ENST00000471567 BLMP54132 1417 aaPredicted RBP20.95■□□□□ 0.95
SDC3-203ENST00000471567 CRB1P82279 1406 aa20.95■□□□□ 0.95
SDC3-203ENST00000471567 FBLN1P23142 703 aa20.95■□□□□ 0.94
SDC3-203ENST00000471567 FAM98CQ17RN3 349 aaKnown RBP20.95■□□□□ 0.94
SDC3-203ENST00000471567 SEPT12Q8IYM1 358 aa20.95■□□□□ 0.94
SDC3-203ENST00000471567 PER1O15534 1290 aaPredicted RBP20.94■□□□□ 0.94
SDC3-203ENST00000471567 AMPHP49418 695 aa20.94■□□□□ 0.94
SDC3-203ENST00000471567 BARGINQ6ZT62 677 aa20.94■□□□□ 0.94
SDC3-203ENST00000471567 TOM1L2Q6ZVM7 507 aa20.94■□□□□ 0.94
SDC3-203ENST00000471567 TCP11L2Q8N4U5 519 aa20.94■□□□□ 0.94
SDC3-203ENST00000471567 RTL1A6NKG5 1358 aa20.94■□□□□ 0.94
SDC3-203ENST00000471567 CSB-PGBD3P0DP91 1061 aa20.93■□□□□ 0.94
SDC3-203ENST00000471567 RRS1Q15050 365 aaKnown RBP20.93■□□□□ 0.94
SDC3-203ENST00000471567 KIF24Q5T7B8 1368 aa20.93■□□□□ 0.94
SDC3-203ENST00000471567 RGPD5Q99666 1765 aa20.92■□□□□ 0.94
SDC3-203ENST00000471567 HOXC9P31274 260 aa20.92■□□□□ 0.94
SDC3-203ENST00000471567 AMER1Q5JTC6 1135 aaPredicted RBP20.92■□□□□ 0.94
SDC3-203ENST00000471567 CARD10Q9BWT7 1032 aa20.92■□□□□ 0.94
SDC3-203ENST00000471567 USP35Q9P2H5 1018 aa20.92■□□□□ 0.94
SDC3-203ENST00000471567 ERBB3P21860 1342 aa20.92■□□□□ 0.94
SDC3-203ENST00000471567 ANKRD26Q9UPS8 1709 aa20.92■□□□□ 0.94
SDC3-203ENST00000471567 ANKRD24Q8TF21 1146 aa20.91■□□□□ 0.94
SDC3-203ENST00000471567 A0A0G2JS52 829 aa20.89■□□□□ 0.93
SDC3-203ENST00000471567 MYT1Q01538 1121 aa20.89■□□□□ 0.93
SDC3-203ENST00000471567 MORC1Q86VD1 984 aa20.89■□□□□ 0.93
SDC3-203ENST00000471567 FLT4P35916 1363 aa20.88■□□□□ 0.93
SDC3-203ENST00000471567 NPC1L1Q9UHC9 1359 aa20.88■□□□□ 0.93
SDC3-203ENST00000471567 THSD7AQ9UPZ6 1657 aa20.87■□□□□ 0.93
SDC3-203ENST00000471567 CDCA7Q9BWT1 371 aaPredicted RBP20.87■□□□□ 0.93
SDC3-203ENST00000471567 INSRP06213 1382 aa20.86■□□□□ 0.93
SDC3-203ENST00000471567 KRT27Q7Z3Y8 459 aa20.86■□□□□ 0.93
SDC3-203ENST00000471567 NLRP2Q9NX02 1062 aa20.86■□□□□ 0.93
SDC3-203ENST00000471567 POLKQ9UBT6 870 aa20.86■□□□□ 0.93
SDC3-203ENST00000471567 EMILIN1Q9Y6C2 1016 aa20.86■□□□□ 0.93
SDC3-203ENST00000471567 TNNT2P45379 298 aaPredicted RBP20.84■□□□□ 0.93
SDC3-203ENST00000471567 HSP90AB2PQ58FF8 381 aa20.84■□□□□ 0.93
SDC3-203ENST00000471567 LTV1Q96GA3 475 aaPredicted RBP20.84■□□□□ 0.93
SDC3-203ENST00000471567 BRWD3Q6RI45 1802 aa20.83■□□□□ 0.93
SDC3-203ENST00000471567 PEAK1Q9H792 1746 aa20.83■□□□□ 0.92
SDC3-203ENST00000471567 MAP2P11137 1827 aaKnown RBP20.83■□□□□ 0.92
SDC3-203ENST00000471567 SMG6Q86US8 1419 aaKnown RBP20.82■□□□□ 0.92
SDC3-203ENST00000471567 PPM1GO15355 546 aaPredicted RBP20.82■□□□□ 0.92
SDC3-203ENST00000471567 FAM208AQ9UK61 1670 aaKnown RBP20.82■□□□□ 0.92
SDC3-203ENST00000471567 CC2D1BQ5T0F9 858 aaKnown RBP20.81■□□□□ 0.92
SDC3-203ENST00000471567 UPF1Q92900 1129 aaKnown RBP eCLIP20.81■□□□□ 0.92
SDC3-203ENST00000471567 DISP2A7MBM2 1401 aa20.8■□□□□ 0.92
SDC3-203ENST00000471567 PDE3BQ13370 1112 aa20.8■□□□□ 0.92
SDC3-203ENST00000471567 PARP4Q9UKK3 1724 aaKnown RBP20.79■□□□□ 0.92
SDC3-203ENST00000471567 DDB1Q16531 1140 aa20.78■□□□□ 0.92
SDC3-203ENST00000471567 IL2RBP14784 551 aa20.77■□□□□ 0.92
SDC3-203ENST00000471567 NBPF6Q5VWK0 638 aa20.77■□□□□ 0.92
SDC3-203ENST00000471567 NBPF4Q96M43 638 aa20.77■□□□□ 0.92
SDC3-203ENST00000471567 WNK3Q9BYP7 1800 aa20.76■□□□□ 0.91
SDC3-203ENST00000471567 EXOC5O00471 708 aa20.76■□□□□ 0.91
SDC3-203ENST00000471567 CCDC125Q86Z20 511 aa20.76■□□□□ 0.91
SDC3-203ENST00000471567 FAM196AQ6ZSG2 479 aa20.74■□□□□ 0.91
SDC3-203ENST00000471567 LRRC37A3O60309 1634 aa20.73■□□□□ 0.91
SDC3-203ENST00000471567 MTHFSP49914 203 aa20.72■□□□□ 0.91
SDC3-203ENST00000471567 DDX10Q13206 875 aaKnown RBP20.72■□□□□ 0.91
SDC3-203ENST00000471567 EIF4A2Q14240 407 aaKnown RBP20.72■□□□□ 0.91
SDC3-203ENST00000471567 RGPD2P0DJD1 1756 aa20.72■□□□□ 0.91
SDC3-203ENST00000471567 FAM182BQ5T319 152 aa20.71■□□□□ 0.91
SDC3-203ENST00000471567 TNS2Q63HR2 1409 aa20.7■□□□□ 0.9
SDC3-203ENST00000471567 CNGB1Q14028 1251 aaPredicted RBP20.7■□□□□ 0.9
SDC3-203ENST00000471567 USHBP1Q8N6Y0 703 aa20.7■□□□□ 0.9
SDC3-203ENST00000471567 EYA1Q99502 592 aa20.7■□□□□ 0.9
SDC3-203ENST00000471567 NCAPD2Q15021 1401 aa20.7■□□□□ 0.9
SDC3-203ENST00000471567 MARCH10Q8NA82 808 aaPredicted RBP20.69■□□□□ 0.9
SDC3-203ENST00000471567 RAPGEF4Q8WZA2 1011 aa20.69■□□□□ 0.9
SDC3-203ENST00000471567 OVOS2A0A0G2JMS6 1433 aa20.69■□□□□ 0.9
SDC3-203ENST00000471567 TATP17735 454 aaPredicted RBP20.67■□□□□ 0.9
SDC3-203ENST00000471567 BCL9O00512 1426 aa20.67■□□□□ 0.9
SDC3-203ENST00000471567 ZNF316A6NFI3 1004 aaPredicted RBP20.66■□□□□ 0.9
SDC3-203ENST00000471567 SF3B2Q13435 895 aaKnown RBP20.66■□□□□ 0.9
SDC3-203ENST00000471567 IGSF1Q8N6C5 1336 aa20.66■□□□□ 0.9
SDC3-203ENST00000471567 MEGF6O75095 1541 aa20.66■□□□□ 0.9
SDC3-203ENST00000471567 IL13P35225 146 aa20.65■□□□□ 0.9
SDC3-203ENST00000471567 ZCRB1Q8TBF4 217 aaKnown RBP20.65■□□□□ 0.9
SDC3-203ENST00000471567 EP400Q96L91 3159 aa20.64■□□□□ 0.89
SDC3-203ENST00000471567 PPP2R1AP30153 589 aa20.63■□□□□ 0.89
SDC3-203ENST00000471567 PARD3Q8TEW0 1356 aa20.62■□□□□ 0.89
SDC3-203ENST00000471567 PLEKHG2Q9H7P9 1386 aa20.62■□□□□ 0.89
SDC3-203ENST00000471567 DIAPH1O60610 1272 aaKnown RBP20.62■□□□□ 0.89
SDC3-203ENST00000471567 TRIM37O94972 964 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms