RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 ADAM32Q8TC27 787 aa10.46□□□□□ -0.73
PTCD3-208ENST00000469585 WNT7BP56706 349 aa10.45□□□□□ -0.74
PTCD3-208ENST00000469585 SEMA3FQ13275 785 aa10.43□□□□□ -0.74
PTCD3-208ENST00000469585 ERFEQ4G0M1 354 aa10.43□□□□□ -0.74
PTCD3-208ENST00000469585 ZBTB33Q86T24 672 aa10.43□□□□□ -0.74
PTCD3-208ENST00000469585 C1QTNF2Q9BXJ5 285 aa10.43□□□□□ -0.74
PTCD3-208ENST00000469585 SERPINA10Q9UK55 444 aa10.43□□□□□ -0.74
PTCD3-208ENST00000469585 MAGEB6P1A0A0J9YX57 407 aa10.42□□□□□ -0.74
PTCD3-208ENST00000469585 CD2BP2O95400 341 aaKnown RBP10.42□□□□□ -0.74
PTCD3-208ENST00000469585 AGERQ15109 404 aa10.42□□□□□ -0.74
PTCD3-208ENST00000469585 CARD14Q9BXL6 1004 aa10.42□□□□□ -0.74
PTCD3-208ENST00000469585 WRNQ14191 1432 aaPredicted RBP eCLIP10.41□□□□□ -0.74
PTCD3-208ENST00000469585 SLC19A1P41440 591 aa10.41□□□□□ -0.74
PTCD3-208ENST00000469585 CCDC97Q96F63 343 aaPredicted RBP10.41□□□□□ -0.74
PTCD3-208ENST00000469585 PCDHB9Q9Y5E1 797 aa10.41□□□□□ -0.74
PTCD3-208ENST00000469585 SOGA1O94964 1423 aa10.41□□□□□ -0.74
PTCD3-208ENST00000469585 MCCD1P59942 119 aaPredicted RBP10.4□□□□□ -0.74
PTCD3-208ENST00000469585 UCN2Q96RP3 112 aa10.4□□□□□ -0.74
PTCD3-208ENST00000469585 ARID3AQ99856 593 aa10.4□□□□□ -0.74
PTCD3-208ENST00000469585 TRMT44Q8IYL2 757 aaKnown RBP10.39□□□□□ -0.75
PTCD3-208ENST00000469585 POLA1P09884 1462 aaPredicted RBP10.38□□□□□ -0.75
PTCD3-208ENST00000469585 FGD5Q6ZNL6 1462 aa10.38□□□□□ -0.75
PTCD3-208ENST00000469585 VARSP26640 1264 aaKnown RBP10.38□□□□□ -0.75
PTCD3-208ENST00000469585 RC3H1Q5TC82 1133 aaKnown RBP10.38□□□□□ -0.75
PTCD3-208ENST00000469585 SPRYD7Q5W111 196 aa10.38□□□□□ -0.75
PTCD3-208ENST00000469585 ZNF592Q92610 1267 aa10.38□□□□□ -0.75
PTCD3-208ENST00000469585 CEP126Q9P2H0 1117 aa10.38□□□□□ -0.75
PTCD3-208ENST00000469585 DZIP3Q86Y13 1208 aaKnown RBP10.37□□□□□ -0.75
PTCD3-208ENST00000469585 CUX1P39880 1505 aa10.37□□□□□ -0.75
PTCD3-208ENST00000469585 WDR97A6NE52 1622 aa10.36□□□□□ -0.75
PTCD3-208ENST00000469585 PHTF2Q8N3S3 785 aa10.35□□□□□ -0.75
PTCD3-208ENST00000469585 EHBP1Q8NDI1 1231 aa10.35□□□□□ -0.75
PTCD3-208ENST00000469585 FAM174AQ8TBP5 190 aa10.35□□□□□ -0.75
PTCD3-208ENST00000469585 SLC10A4Q96EP9 437 aa10.35□□□□□ -0.75
PTCD3-208ENST00000469585 PPP1R12CQ9BZL4 782 aa10.35□□□□□ -0.75
PTCD3-208ENST00000469585 V9GY48 417 aaPredicted RBP10.35□□□□□ -0.75
PTCD3-208ENST00000469585 PALM3A6NDB9 673 aaPredicted RBP10.34□□□□□ -0.75
PTCD3-208ENST00000469585 PIK3CDO00329 1044 aa10.34□□□□□ -0.75
PTCD3-208ENST00000469585 WNT7AO00755 349 aa10.34□□□□□ -0.75
PTCD3-208ENST00000469585 SIAH2O43255 324 aa10.34□□□□□ -0.75
PTCD3-208ENST00000469585 PRKD2Q9BZL6 878 aa10.34□□□□□ -0.75
PTCD3-208ENST00000469585 TOP2BQ02880 1626 aa10.33□□□□□ -0.76
PTCD3-208ENST00000469585 CFAP70Q5T0N1 1121 aa10.33□□□□□ -0.76
PTCD3-208ENST00000469585 TBC1D9Q6ZT07 1266 aa10.33□□□□□ -0.76
PTCD3-208ENST00000469585 ZNF598Q86UK7 904 aaKnown RBP10.33□□□□□ -0.76
PTCD3-208ENST00000469585 EIF4G3O43432 1585 aaKnown RBP10.32□□□□□ -0.76
PTCD3-208ENST00000469585 MPNDQ8N594 471 aa10.32□□□□□ -0.76
PTCD3-208ENST00000469585 NFATC2IPQ8NCF5 419 aa10.32□□□□□ -0.76
PTCD3-208ENST00000469585 TFIP11Q9UBB9 837 aaKnown RBP10.32□□□□□ -0.76
PTCD3-208ENST00000469585 CHIC2Q9UKJ5 165 aa10.32□□□□□ -0.76
PTCD3-208ENST00000469585 CDV3Q9UKY7 258 aaKnown RBP10.32□□□□□ -0.76
PTCD3-208ENST00000469585 MAP4K5Q9Y4K4 846 aa10.32□□□□□ -0.76
PTCD3-208ENST00000469585 BIVM-ERCC5R4GMW8 1640 aa10.32□□□□□ -0.76
PTCD3-208ENST00000469585 RAD54L2Q9Y4B4 1467 aa10.31□□□□□ -0.76
PTCD3-208ENST00000469585 ESPNB1AK53 854 aa10.31□□□□□ -0.76
PTCD3-208ENST00000469585 GIGYF1O75420 1035 aaPredicted RBP10.31□□□□□ -0.76
PTCD3-208ENST00000469585 ZNF697Q5TEC3 545 aa10.31□□□□□ -0.76
PTCD3-208ENST00000469585 MRGPRX2Q96LB1 330 aa10.31□□□□□ -0.76
PTCD3-208ENST00000469585 CDK15Q96Q40 435 aa10.31□□□□□ -0.76
PTCD3-208ENST00000469585 TARBP1Q13395 1621 aaKnown RBP10.3□□□□□ -0.76
PTCD3-208ENST00000469585 TDRD9Q8NDG6 1382 aaKnown RBP10.3□□□□□ -0.76
PTCD3-208ENST00000469585 ZNF608Q9ULD9 1512 aaPredicted RBP10.3□□□□□ -0.76
PTCD3-208ENST00000469585 ATP9BO43861 1147 aa10.3□□□□□ -0.76
PTCD3-208ENST00000469585 NBPF20Q3BBV1 942 aa10.3□□□□□ -0.76
PTCD3-208ENST00000469585 SLFNL1Q499Z3 407 aa10.3□□□□□ -0.76
PTCD3-208ENST00000469585 PKD2L1Q9P0L9 805 aa10.3□□□□□ -0.76
PTCD3-208ENST00000469585 MAFBQ9Y5Q3 323 aaPredicted RBP10.3□□□□□ -0.76
PTCD3-208ENST00000469585 RNF135Q8IUD6 432 aa10.29□□□□□ -0.76
PTCD3-208ENST00000469585 CHMP7Q8WUX9 453 aaPredicted RBP10.29□□□□□ -0.76
PTCD3-208ENST00000469585 TLL2Q9Y6L7 1015 aa10.29□□□□□ -0.76
PTCD3-208ENST00000469585 AQRO60306 1485 aaKnown RBP eCLIP10.29□□□□□ -0.765e-9■■■■□ 20
PTCD3-208ENST00000469585 GRIN2BQ13224 1484 aa10.29□□□□□ -0.76
PTCD3-208ENST00000469585 GAPVD1Q14C86 1478 aa10.29□□□□□ -0.76
PTCD3-208ENST00000469585 ABCA10Q8WWZ4 1543 aa10.28□□□□□ -0.76
PTCD3-208ENST00000469585 SYNJ1O43426 1573 aa10.28□□□□□ -0.76
PTCD3-208ENST00000469585 KCTD15Q96SI1 283 aaPredicted RBP10.28□□□□□ -0.76
PTCD3-208ENST00000469585 SKIP12755 728 aa10.27□□□□□ -0.77
PTCD3-208ENST00000469585 LMOD1P29536 600 aaPredicted RBP10.27□□□□□ -0.77
PTCD3-208ENST00000469585 GRM5P41594 1212 aa10.27□□□□□ -0.77
PTCD3-208ENST00000469585 SRPK2P78362 688 aaKnown RBP10.27□□□□□ -0.77
PTCD3-208ENST00000469585 TSGA10IPQ3SY00 556 aa10.27□□□□□ -0.77
PTCD3-208ENST00000469585 VASH1Q7L8A9 365 aaPredicted RBP10.27□□□□□ -0.77
PTCD3-208ENST00000469585 SEPT12Q8IYM1 358 aa10.27□□□□□ -0.77
PTCD3-208ENST00000469585 CCDC85AQ96PX6 553 aaPredicted RBP10.27□□□□□ -0.77
PTCD3-208ENST00000469585 MAGI1Q96QZ7 1491 aaPredicted RBP10.26□□□□□ -0.77
PTCD3-208ENST00000469585 GDF9O60383 454 aa10.26□□□□□ -0.77
PTCD3-208ENST00000469585 RNF20Q5VTR2 975 aa10.26□□□□□ -0.77
PTCD3-208ENST00000469585 TRAF7Q6Q0C0 670 aa10.26□□□□□ -0.77
PTCD3-208ENST00000469585 PLPP7Q8NBV4 271 aa10.26□□□□□ -0.77
PTCD3-208ENST00000469585 USP17L5A8MUK1 530 aa10.25□□□□□ -0.77
PTCD3-208ENST00000469585 RFX1P22670 979 aa10.25□□□□□ -0.77
PTCD3-208ENST00000469585 ARID5BQ14865 1188 aa10.25□□□□□ -0.77
PTCD3-208ENST00000469585 INTS6LQ5JSJ4 861 aaKnown RBP10.25□□□□□ -0.77
PTCD3-208ENST00000469585 PLEKHM2Q8IWE5 1019 aa10.25□□□□□ -0.77
PTCD3-208ENST00000469585 KIF27Q86VH2 1401 aa10.24□□□□□ -0.77
PTCD3-208ENST00000469585 USP17L3A6NCW0 530 aa10.24□□□□□ -0.77
PTCD3-208ENST00000469585 USP17L4A6NCW7 530 aa10.24□□□□□ -0.77
PTCD3-208ENST00000469585 FOXC1Q12948 553 aa10.24□□□□□ -0.77
PTCD3-208ENST00000469585 MAP7D1Q3KQU3 841 aa10.24□□□□□ -0.77
PTCD3-208ENST00000469585 USP17L2Q6R6M4 530 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms