RNA–Protein interactions for RNA: ENST00000467319.1

MSH5-212, Transcript of mutS homolog 5, humanhuman

TSL 2

Gene MSH5, Length 688 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-212ENST00000467319 RTL1A6NKG5 1358 aa15.24■□□□□ 0.03
MSH5-212ENST00000467319 FAM208AQ9UK61 1670 aaKnown RBP15.23■□□□□ 0.03
MSH5-212ENST00000467319 WNK3Q9BYP7 1800 aa15.23■□□□□ 0.03
MSH5-212ENST00000467319 RBM6P78332 1123 aaKnown RBP15.23■□□□□ 0.03
MSH5-212ENST00000467319 BLMP54132 1417 aaPredicted RBP15.23■□□□□ 0.03
MSH5-212ENST00000467319 SMG6Q86US8 1419 aaKnown RBP15.23■□□□□ 0.03
MSH5-212ENST00000467319 SOX12O15370 315 aa15.22■□□□□ 0.03
MSH5-212ENST00000467319 NPC1L1Q9UHC9 1359 aa15.22■□□□□ 0.03
MSH5-212ENST00000467319 MAP3K19Q56UN5 1328 aa15.21■□□□□ 0.03
MSH5-212ENST00000467319 SPATA31A5Q5VU36 1347 aa15.21■□□□□ 0.03
MSH5-212ENST00000467319 SPATA31A7Q8IWB4 1347 aa15.21■□□□□ 0.03
MSH5-212ENST00000467319 PER1O15534 1290 aaPredicted RBP15.21■□□□□ 0.03
MSH5-212ENST00000467319 AMER1Q5JTC6 1135 aaPredicted RBP15.21■□□□□ 0.03
MSH5-212ENST00000467319 GJD4Q96KN9 370 aaPredicted RBP15.21■□□□□ 0.03
MSH5-212ENST00000467319 KIF24Q5T7B8 1368 aa15.21■□□□□ 0.02
MSH5-212ENST00000467319 CRB1P82279 1406 aa15.2■□□□□ 0.02
MSH5-212ENST00000467319 RXRBP28702 533 aa15.2■□□□□ 0.02
MSH5-212ENST00000467319 AXIN2Q9Y2T1 843 aa15.2■□□□□ 0.02
MSH5-212ENST00000467319 ERBB3P21860 1342 aa15.18■□□□□ 0.02
MSH5-212ENST00000467319 SPATA31A1Q5TZJ5 1347 aa15.18■□□□□ 0.02
MSH5-212ENST00000467319 WDR17Q8IZU2 1322 aa15.18■□□□□ 0.02
MSH5-212ENST00000467319 KNSTRNQ9Y448 316 aa15.18■□□□□ 0.02
MSH5-212ENST00000467319 EP400Q96L91 3159 aa15.18■□□□□ 0.02
MSH5-212ENST00000467319 PARP4Q9UKK3 1724 aaKnown RBP15.17■□□□□ 0.02
MSH5-212ENST00000467319 FLT4P35916 1363 aa15.17■□□□□ 0.02
MSH5-212ENST00000467319 LARP1Q6PKG0 1096 aaKnown RBP15.17■□□□□ 0.02
MSH5-212ENST00000467319 BRWD3Q6RI45 1802 aa15.16■□□□□ 0.02
MSH5-212ENST00000467319 ZBTB7CA1YPR0 619 aa15.16■□□□□ 0.02
MSH5-212ENST00000467319 FBLN1P23142 703 aa15.16■□□□□ 0.02
MSH5-212ENST00000467319 RRS1Q15050 365 aaKnown RBP15.16■□□□□ 0.02
MSH5-212ENST00000467319 IP6K1Q92551 441 aa15.16■□□□□ 0.02
MSH5-212ENST00000467319 STRN4Q9NRL3 753 aa15.16■□□□□ 0.02
MSH5-212ENST00000467319 LRRC37A3O60309 1634 aa15.16■□□□□ 0.02
MSH5-212ENST00000467319 DISP2A7MBM2 1401 aa15.16■□□□□ 0.02
MSH5-212ENST00000467319 ONECUT3O60422 494 aaPredicted RBP15.15■□□□□ 0.02
MSH5-212ENST00000467319 HOXC9P31274 260 aa15.15■□□□□ 0.02
MSH5-212ENST00000467319 MAP2P11137 1827 aaKnown RBP15.15■□□□□ 0.02
MSH5-212ENST00000467319 INSRP06213 1382 aa15.14■□□□□ 0.01
MSH5-212ENST00000467319 NCAPD2Q15021 1401 aa15.13■□□□□ 0.01
MSH5-212ENST00000467319 BARGINQ6ZT62 677 aa15.13■□□□□ 0.01
MSH5-212ENST00000467319 CCDC9Q9Y3X0 531 aaKnown RBP15.13■□□□□ 0.01
MSH5-212ENST00000467319 EMILIN1Q9Y6C2 1016 aa15.13■□□□□ 0.01
MSH5-212ENST00000467319 RGPD2P0DJD1 1756 aa15.12■□□□□ 0.01
MSH5-212ENST00000467319 EVA1CP58658 441 aa15.12■□□□□ 0.01
MSH5-212ENST00000467319 ANKRD24Q8TF21 1146 aa15.12■□□□□ 0.01
MSH5-212ENST00000467319 THRAP3Q9Y2W1 955 aaKnown RBP15.12■□□□□ 0.01
MSH5-212ENST00000467319 FAM98CQ17RN3 349 aaKnown RBP15.11■□□□□ 0.01
MSH5-212ENST00000467319 TCP11L2Q8N4U5 519 aa15.11■□□□□ 0.01
MSH5-212ENST00000467319 CARD10Q9BWT7 1032 aa15.11■□□□□ 0.01
MSH5-212ENST00000467319 POLKQ9UBT6 870 aa15.11■□□□□ 0.01
MSH5-212ENST00000467319 AMPHP49418 695 aa15.1■□□□□ 0.01
MSH5-212ENST00000467319 MORC1Q86VD1 984 aa15.1■□□□□ 0.01
MSH5-212ENST00000467319 RGPD1P0DJD0 1748 aa15.09■□□□□ 0.01
MSH5-212ENST00000467319 TOM1L2Q6ZVM7 507 aa15.09■□□□□ 0.01
MSH5-212ENST00000467319 SEPT12Q8IYM1 358 aa15.09■□□□□ 0.01
MSH5-212ENST00000467319 TNS2Q63HR2 1409 aa15.09■□□□□ 0.01
MSH5-212ENST00000467319 COL3A1P02461 1466 aaPredicted RBP15.08■□□□□ 0.01
MSH5-212ENST00000467319 TNNT2P45379 298 aaPredicted RBP15.08■□□□□ 0
MSH5-212ENST00000467319 HSP90AB2PQ58FF8 381 aa15.08■□□□□ 0
MSH5-212ENST00000467319 CC2D1BQ5T0F9 858 aaKnown RBP15.08■□□□□ 0
MSH5-212ENST00000467319 CSB-PGBD3P0DP91 1061 aa15.07■□□□□ 0
MSH5-212ENST00000467319 USP35Q9P2H5 1018 aa15.07■□□□□ 0
MSH5-212ENST00000467319 PARD3Q8TEW0 1356 aa15.07■□□□□ 0
MSH5-212ENST00000467319 SHANK3Q9BYB0 1731 aa15.06■□□□□ 0
MSH5-212ENST00000467319 SOCS7O14512 581 aa15.06■□□□□ 0
MSH5-212ENST00000467319 MEGF6O75095 1541 aa15.06■□□□□ 0
MSH5-212ENST00000467319 CDCA7Q9BWT1 371 aaPredicted RBP15.05■□□□□ -0
MSH5-212ENST00000467319 NLRP2Q9NX02 1062 aa15.05■□□□□ -0
MSH5-212ENST00000467319 PKD1L3Q7Z443 1732 aa15.04■□□□□ -0
MSH5-212ENST00000467319 OVOS2A0A0G2JMS6 1433 aa15.04■□□□□ -0
MSH5-212ENST00000467319 KRT27Q7Z3Y8 459 aa15.03■□□□□ -0
MSH5-212ENST00000467319 LTV1Q96GA3 475 aaPredicted RBP15.03■□□□□ -0
MSH5-212ENST00000467319 PLEKHG2Q9H7P9 1386 aa15.02■□□□□ -0
MSH5-212ENST00000467319 A0A0G2JS52 829 aa15.02■□□□□ -0
MSH5-212ENST00000467319 PPM1GO15355 546 aaPredicted RBP15.02■□□□□ -0
MSH5-212ENST00000467319 MYT1Q01538 1121 aa15.02■□□□□ -0
MSH5-212ENST00000467319 DDX10Q13206 875 aaKnown RBP15.02■□□□□ -0
MSH5-212ENST00000467319 EIF4A2Q14240 407 aaKnown RBP15.02■□□□□ -0
MSH5-212ENST00000467319 NBPF6Q5VWK0 638 aa15.02■□□□□ -0
MSH5-212ENST00000467319 NBPF4Q96M43 638 aa15.02■□□□□ -0
MSH5-212ENST00000467319 TNS1Q9HBL0 1735 aaKnown RBP15.02□□□□□ -0.01
MSH5-212ENST00000467319 BCL9O00512 1426 aa15.01□□□□□ -0.01
MSH5-212ENST00000467319 IGSF1Q8N6C5 1336 aa15.01□□□□□ -0.01
MSH5-212ENST00000467319 ZNF316A6NFI3 1004 aaPredicted RBP15.01□□□□□ -0.01
MSH5-212ENST00000467319 IL2RBP14784 551 aa15□□□□□ -0.01
MSH5-212ENST00000467319 MTHFSP49914 203 aa15□□□□□ -0.01
MSH5-212ENST00000467319 KDRP35968 1356 aa14.99□□□□□ -0.01
MSH5-212ENST00000467319 PPP2R1AP30153 589 aa14.98□□□□□ -0.01
MSH5-212ENST00000467319 DDB1Q16531 1140 aa14.98□□□□□ -0.01
MSH5-212ENST00000467319 USHBP1Q8N6Y0 703 aa14.98□□□□□ -0.01
MSH5-212ENST00000467319 EYA1Q99502 592 aa14.98□□□□□ -0.01
MSH5-212ENST00000467319 SBF2Q86WG5 1849 aa14.97□□□□□ -0.01
MSH5-212ENST00000467319 IL13P35225 146 aa14.97□□□□□ -0.01
MSH5-212ENST00000467319 UPF1Q92900 1129 aaKnown RBP eCLIP14.97□□□□□ -0.01
MSH5-212ENST00000467319 NHSQ6T4R5 1651 aa14.97□□□□□ -0.01
MSH5-212ENST00000467319 PDE3BQ13370 1112 aa14.95□□□□□ -0.02
MSH5-212ENST00000467319 CNGB1Q14028 1251 aaPredicted RBP14.95□□□□□ -0.02
MSH5-212ENST00000467319 MARCH10Q8NA82 808 aaPredicted RBP14.95□□□□□ -0.02
MSH5-212ENST00000467319 FAM182BQ5T319 152 aa14.94□□□□□ -0.02
MSH5-212ENST00000467319 DOT1LQ8TEK3 1739 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms