RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 SLC15A2Q16348 729 aa14.44□□□□□ -0.1
USP39-212ENST00000465514 PAPPAQ13219 1627 aa14.44□□□□□ -0.1
USP39-212ENST00000465514 WASLO00401 505 aaPredicted RBP14.42□□□□□ -0.1
USP39-212ENST00000465514 TXNRD1Q16881 649 aa14.42□□□□□ -0.1
USP39-212ENST00000465514 DDB1Q16531 1140 aa14.41□□□□□ -0.1
USP39-212ENST00000465514 PELP1Q8IZL8 1130 aaKnown RBP14.41□□□□□ -0.1
USP39-212ENST00000465514 ARHGEF28Q8N1W1 1705 aaKnown RBP14.41□□□□□ -0.1
USP39-212ENST00000465514 TRAK1Q9UPV9 953 aa14.4□□□□□ -0.1
USP39-212ENST00000465514 COL24A1Q17RW2 1714 aa14.4□□□□□ -0.1
USP39-212ENST00000465514 BCL9O00512 1426 aa14.4□□□□□ -0.1
USP39-212ENST00000465514 USP19O94966 1318 aa14.4□□□□□ -0.1
USP39-212ENST00000465514 NHSQ6T4R5 1651 aa14.39□□□□□ -0.11
USP39-212ENST00000465514 AATKQ6ZMQ8 1374 aa14.39□□□□□ -0.11
USP39-212ENST00000465514 KLHL34Q8N239 644 aa14.38□□□□□ -0.11
USP39-212ENST00000465514 MARCH10Q8NA82 808 aaPredicted RBP14.38□□□□□ -0.11
USP39-212ENST00000465514 QSER1Q2KHR3 1735 aa14.38□□□□□ -0.11
USP39-212ENST00000465514 RGPD5Q99666 1765 aa14.37□□□□□ -0.11
USP39-212ENST00000465514 POLR3AO14802 1390 aaPredicted RBP14.37□□□□□ -0.11
USP39-212ENST00000465514 TUBGCP6Q96RT7 1819 aa14.37□□□□□ -0.11
USP39-212ENST00000465514 PPP4R3CPQ6ZMV5 832 aa14.37□□□□□ -0.11
USP39-212ENST00000465514 NUDT16Q96DE0 195 aaKnown RBP14.37□□□□□ -0.11
USP39-212ENST00000465514 COL18A1P39060 1754 aa14.37□□□□□ -0.11
USP39-212ENST00000465514 BTAF1O14981 1849 aa14.36□□□□□ -0.11
USP39-212ENST00000465514 ATP10DQ9P241 1426 aa14.36□□□□□ -0.11
USP39-212ENST00000465514 HSPA6P17066 643 aa14.36□□□□□ -0.11
USP39-212ENST00000465514 ABTB2Q8N961 1025 aa14.36□□□□□ -0.11
USP39-212ENST00000465514 ZBTB7CA1YPR0 619 aa14.35□□□□□ -0.11
USP39-212ENST00000465514 ACEP12821 1306 aa14.35□□□□□ -0.11
USP39-212ENST00000465514 KAT6BQ8WYB5 2073 aa14.34□□□□□ -0.11
USP39-212ENST00000465514 GCP02774 474 aa14.34□□□□□ -0.11
USP39-212ENST00000465514 TOM1L2Q6ZVM7 507 aa14.33□□□□□ -0.12
USP39-212ENST00000465514 NLGN2Q8NFZ4 835 aa14.33□□□□□ -0.12
USP39-212ENST00000465514 YBX3P16989 372 aaKnown RBP eCLIP14.31□□□□□ -0.126e-7■■□□□ 13
USP39-212ENST00000465514 ZNF827Q17R98 1081 aa14.31□□□□□ -0.12
USP39-212ENST00000465514 SLIT3O75094 1523 aa14.31□□□□□ -0.12
USP39-212ENST00000465514 NLRP13Q86W25 1043 aa14.3□□□□□ -0.12
USP39-212ENST00000465514 GPBP1L1Q9HC44 474 aaPredicted RBP14.3□□□□□ -0.12
USP39-212ENST00000465514 RAB3GAP2Q9H2M9 1393 aa14.3□□□□□ -0.12
USP39-212ENST00000465514 CDCA7Q9BWT1 371 aaPredicted RBP14.29□□□□□ -0.12
USP39-212ENST00000465514 WDR17Q8IZU2 1322 aa14.29□□□□□ -0.12
USP39-212ENST00000465514 PIK3C2AO00443 1686 aa14.28□□□□□ -0.12
USP39-212ENST00000465514 GRIN3BO60391 1043 aa14.28□□□□□ -0.12
USP39-212ENST00000465514 POLD1P28340 1107 aa14.28□□□□□ -0.12
USP39-212ENST00000465514 TNS2Q63HR2 1409 aa14.28□□□□□ -0.12
USP39-212ENST00000465514 TRPM1Q7Z4N2 1603 aa14.28□□□□□ -0.12
USP39-212ENST00000465514 CDK19Q9BWU1 502 aa14.28□□□□□ -0.12
USP39-212ENST00000465514 ABCC6O95255 1503 aa14.27□□□□□ -0.12
USP39-212ENST00000465514 ZNF526Q8TF50 670 aaPredicted RBP14.27□□□□□ -0.13
USP39-212ENST00000465514 ADCY9O60503 1353 aa14.26□□□□□ -0.13
USP39-212ENST00000465514 PLEKHG3A1L390 1219 aa14.26□□□□□ -0.13
USP39-212ENST00000465514 ACSBG1Q96GR2 724 aa14.26□□□□□ -0.13
USP39-212ENST00000465514 CCDC61Q9Y6R9 512 aa14.26□□□□□ -0.13
USP39-212ENST00000465514 CPSF1Q10570 1443 aaKnown RBP14.25□□□□□ -0.13
USP39-212ENST00000465514 BRD4O60885 1362 aaPredicted RBP14.25□□□□□ -0.13
USP39-212ENST00000465514 SLC16A10Q8TF71 515 aa14.25□□□□□ -0.13
USP39-212ENST00000465514 LRRC4BQ9NT99 713 aa14.25□□□□□ -0.13
USP39-212ENST00000465514 AXIN2Q9Y2T1 843 aa14.25□□□□□ -0.13
USP39-212ENST00000465514 QRICH2Q9H0J4 1663 aa14.24□□□□□ -0.13
USP39-212ENST00000465514 EXOC5O00471 708 aa14.24□□□□□ -0.13
USP39-212ENST00000465514 KDM2AQ9Y2K7 1162 aa14.24□□□□□ -0.13
USP39-212ENST00000465514 USP6P35125 1406 aa14.24□□□□□ -0.13
USP39-212ENST00000465514 PPIP5K1Q6PFW1 1433 aa14.24□□□□□ -0.13
USP39-212ENST00000465514 PNPLA7Q6ZV29 1317 aa14.23□□□□□ -0.13
USP39-212ENST00000465514 CAPN15O75808 1086 aa14.23□□□□□ -0.13
USP39-212ENST00000465514 AKT1S1Q96B36 256 aa14.23□□□□□ -0.13
USP39-212ENST00000465514 PCNTO95613 3336 aa14.22□□□□□ -0.13
USP39-212ENST00000465514 DCAF11Q8TEB1 546 aa14.22□□□□□ -0.13
USP39-212ENST00000465514 CARD10Q9BWT7 1032 aa14.22□□□□□ -0.13
USP39-212ENST00000465514 CSB-PGBD3P0DP91 1061 aa14.21□□□□□ -0.13
USP39-212ENST00000465514 NLRP6P59044 892 aa14.21□□□□□ -0.13
USP39-212ENST00000465514 WDR90Q96KV7 1748 aa14.21□□□□□ -0.14
USP39-212ENST00000465514 LY75O60449 1722 aa14.2□□□□□ -0.14
USP39-212ENST00000465514 APLP1P51693 650 aa14.19□□□□□ -0.14
USP39-212ENST00000465514 CCDC7Q96M83 1385 aa14.19□□□□□ -0.14
USP39-212ENST00000465514 COL13A1Q5TAT6 717 aaPredicted RBP14.18□□□□□ -0.14
USP39-212ENST00000465514 TFCP2L1Q9NZI6 479 aa14.18□□□□□ -0.14
USP39-212ENST00000465514 DNAJC5GQ8N7S2 189 aa14.17□□□□□ -0.14
USP39-212ENST00000465514 STAC3Q96MF2 364 aa14.17□□□□□ -0.14
USP39-212ENST00000465514 NFAT5O94916 1531 aa14.16□□□□□ -0.14
USP39-212ENST00000465514 DOT1LQ8TEK3 1739 aa14.16□□□□□ -0.14
USP39-212ENST00000465514 KIF3CO14782 793 aa14.16□□□□□ -0.14
USP39-212ENST00000465514 SLC27A3Q5K4L6 730 aa14.16□□□□□ -0.14
USP39-212ENST00000465514 ARHGEF25Q86VW2 580 aa14.16□□□□□ -0.14
USP39-212ENST00000465514 SOX12O15370 315 aa14.15□□□□□ -0.14
USP39-212ENST00000465514 KCNQ4P56696 695 aa14.15□□□□□ -0.14
USP39-212ENST00000465514 SRPK2P78362 688 aaKnown RBP14.15□□□□□ -0.14
USP39-212ENST00000465514 LTN1O94822 1766 aa14.14□□□□□ -0.15
USP39-212ENST00000465514 CNKSR2Q8WXI2 1034 aa14.14□□□□□ -0.15
USP39-212ENST00000465514 KIAA1210Q9ULL0 1709 aa14.13□□□□□ -0.15
USP39-212ENST00000465514 MSL1Q68DK7 614 aa14.13□□□□□ -0.15
USP39-212ENST00000465514 HOXD11P31277 338 aaPredicted RBP14.12□□□□□ -0.15
USP39-212ENST00000465514 PRELPP51888 382 aa14.12□□□□□ -0.15
USP39-212ENST00000465514 CABP2Q9NPB3 220 aa14.12□□□□□ -0.15
USP39-212ENST00000465514 C5P01031 1676 aa14.11□□□□□ -0.15
USP39-212ENST00000465514 TNS4Q8IZW8 715 aa14.11□□□□□ -0.15
USP39-212ENST00000465514 IL2RBP14784 551 aa14.1□□□□□ -0.15
USP39-212ENST00000465514 KCNH5Q8NCM2 988 aa14.1□□□□□ -0.15
USP39-212ENST00000465514 CABP1Q9NZU7 370 aa14.1□□□□□ -0.15
USP39-212ENST00000465514 CD2APQ9Y5K6 639 aa14.1□□□□□ -0.15
USP39-212ENST00000465514 CICQ96RK0 1608 aaPredicted RBP14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms