RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 RGS12O14924 1447 aa27.98■■■□□ 2.07
SKA3-205ENST00000465471 NSD2O96028 1365 aa27.98■■■□□ 2.07
SKA3-205ENST00000465471 AXIN2Q9Y2T1 843 aa27.97■■■□□ 2.07
SKA3-205ENST00000465471 SPATA31A5Q5VU36 1347 aa27.95■■■□□ 2.07
SKA3-205ENST00000465471 SPATA31A7Q8IWB4 1347 aa27.95■■■□□ 2.07
SKA3-205ENST00000465471 ZBTB7CA1YPR0 619 aa27.95■■■□□ 2.06
SKA3-205ENST00000465471 PER1O15534 1290 aaPredicted RBP27.95■■■□□ 2.06
SKA3-205ENST00000465471 MAP3K19Q56UN5 1328 aa27.92■■■□□ 2.06
SKA3-205ENST00000465471 AMER1Q5JTC6 1135 aaPredicted RBP27.92■■■□□ 2.06
SKA3-205ENST00000465471 STRN4Q9NRL3 753 aa27.92■■■□□ 2.06
SKA3-205ENST00000465471 KNSTRNQ9Y448 316 aa27.92■■■□□ 2.06
SKA3-205ENST00000465471 BLMP54132 1417 aaPredicted RBP27.92■■■□□ 2.06
SKA3-205ENST00000465471 RTL1A6NKG5 1358 aa27.91■■■□□ 2.06
SKA3-205ENST00000465471 FBLN1P23142 703 aa27.91■■■□□ 2.06
SKA3-205ENST00000465471 PEAK1Q9H792 1746 aa27.91■■■□□ 2.06
SKA3-205ENST00000465471 SPATA31A1Q5TZJ5 1347 aa27.91■■■□□ 2.06
SKA3-205ENST00000465471 ONECUT3O60422 494 aaPredicted RBP27.9■■■□□ 2.06
SKA3-205ENST00000465471 LARP1Q6PKG0 1096 aaKnown RBP27.9■■■□□ 2.06
SKA3-205ENST00000465471 THSD7AQ9UPZ6 1657 aa27.9■■■□□ 2.06
SKA3-205ENST00000465471 EVA1CP58658 441 aa27.89■■■□□ 2.06
SKA3-205ENST00000465471 CRB1P82279 1406 aa27.89■■■□□ 2.06
SKA3-205ENST00000465471 WDR17Q8IZU2 1322 aa27.89■■■□□ 2.05
SKA3-205ENST00000465471 IP6K1Q92551 441 aa27.88■■■□□ 2.05
SKA3-205ENST00000465471 CCDC9Q9Y3X0 531 aaKnown RBP27.88■■■□□ 2.05
SKA3-205ENST00000465471 KIF24Q5T7B8 1368 aa27.87■■■□□ 2.05
SKA3-205ENST00000465471 NPC1L1Q9UHC9 1359 aa27.86■■■□□ 2.05
SKA3-205ENST00000465471 RRS1Q15050 365 aaKnown RBP27.86■■■□□ 2.05
SKA3-205ENST00000465471 ERBB3P21860 1342 aa27.86■■■□□ 2.05
SKA3-205ENST00000465471 MAP2P11137 1827 aaKnown RBP27.85■■■□□ 2.05
SKA3-205ENST00000465471 FAM208AQ9UK61 1670 aaKnown RBP27.85■■■□□ 2.05
SKA3-205ENST00000465471 HOXC9P31274 260 aa27.85■■■□□ 2.05
SKA3-205ENST00000465471 WNK3Q9BYP7 1800 aa27.84■■■□□ 2.05
SKA3-205ENST00000465471 BRWD3Q6RI45 1802 aa27.83■■■□□ 2.05
SKA3-205ENST00000465471 FLT4P35916 1363 aa27.82■■■□□ 2.04
SKA3-205ENST00000465471 SMG6Q86US8 1419 aaKnown RBP27.82■■■□□ 2.04
SKA3-205ENST00000465471 AMPHP49418 695 aa27.81■■■□□ 2.04
SKA3-205ENST00000465471 FAM98CQ17RN3 349 aaKnown RBP27.81■■■□□ 2.04
SKA3-205ENST00000465471 BARGINQ6ZT62 677 aa27.81■■■□□ 2.04
SKA3-205ENST00000465471 TCP11L2Q8N4U5 519 aa27.8■■■□□ 2.04
SKA3-205ENST00000465471 ANKRD24Q8TF21 1146 aa27.8■■■□□ 2.04
SKA3-205ENST00000465471 THRAP3Q9Y2W1 955 aaKnown RBP27.8■■■□□ 2.04
SKA3-205ENST00000465471 EMILIN1Q9Y6C2 1016 aa27.8■■■□□ 2.04
SKA3-205ENST00000465471 INSRP06213 1382 aa27.79■■■□□ 2.04
SKA3-205ENST00000465471 TOM1L2Q6ZVM7 507 aa27.79■■■□□ 2.04
SKA3-205ENST00000465471 SEPT12Q8IYM1 358 aa27.79■■■□□ 2.04
SKA3-205ENST00000465471 CARD10Q9BWT7 1032 aa27.79■■■□□ 2.04
SKA3-205ENST00000465471 PARP4Q9UKK3 1724 aaKnown RBP27.78■■■□□ 2.04
SKA3-205ENST00000465471 POLKQ9UBT6 870 aa27.78■■■□□ 2.04
SKA3-205ENST00000465471 MORC1Q86VD1 984 aa27.77■■■□□ 2.04
SKA3-205ENST00000465471 USP35Q9P2H5 1018 aa27.77■■■□□ 2.04
SKA3-205ENST00000465471 SOCS7O14512 581 aa27.76■■■□□ 2.03
SKA3-205ENST00000465471 CSB-PGBD3P0DP91 1061 aa27.76■■■□□ 2.03
SKA3-205ENST00000465471 DISP2A7MBM2 1401 aa27.75■■■□□ 2.03
SKA3-205ENST00000465471 RGPD2P0DJD1 1756 aa27.74■■■□□ 2.03
SKA3-205ENST00000465471 TNNT2P45379 298 aaPredicted RBP27.74■■■□□ 2.03
SKA3-205ENST00000465471 HSP90AB2PQ58FF8 381 aa27.73■■■□□ 2.03
SKA3-205ENST00000465471 LRRC37A3O60309 1634 aa27.73■■■□□ 2.03
SKA3-205ENST00000465471 CC2D1BQ5T0F9 858 aaKnown RBP27.72■■■□□ 2.03
SKA3-205ENST00000465471 NLRP2Q9NX02 1062 aa27.7■■■□□ 2.02
SKA3-205ENST00000465471 EP400Q96L91 3159 aa27.69■■■□□ 2.02
SKA3-205ENST00000465471 LTV1Q96GA3 475 aaPredicted RBP27.69■■■□□ 2.02
SKA3-205ENST00000465471 A0A0G2JS52 829 aa27.67■■■□□ 2.02
SKA3-205ENST00000465471 MYT1Q01538 1121 aa27.67■■■□□ 2.02
SKA3-205ENST00000465471 KRT27Q7Z3Y8 459 aa27.67■■■□□ 2.02
SKA3-205ENST00000465471 CDCA7Q9BWT1 371 aaPredicted RBP27.67■■■□□ 2.02
SKA3-205ENST00000465471 NCAPD2Q15021 1401 aa27.67■■■□□ 2.02
SKA3-205ENST00000465471 PPM1GO15355 546 aaPredicted RBP27.66■■■□□ 2.02
SKA3-205ENST00000465471 NBPF6Q5VWK0 638 aa27.64■■■□□ 2.02
SKA3-205ENST00000465471 NBPF4Q96M43 638 aa27.64■■■□□ 2.02
SKA3-205ENST00000465471 DDX10Q13206 875 aaKnown RBP27.62■■■□□ 2.01
SKA3-205ENST00000465471 TNS2Q63HR2 1409 aa27.61■■■□□ 2.01
SKA3-205ENST00000465471 EIF4A2Q14240 407 aaKnown RBP27.6■■■□□ 2.01
SKA3-205ENST00000465471 IL2RBP14784 551 aa27.59■■■□□ 2.01
SKA3-205ENST00000465471 RGPD1P0DJD0 1748 aa27.58■■■□□ 2.01
SKA3-205ENST00000465471 MEGF6O75095 1541 aa27.58■■■□□ 2.01
SKA3-205ENST00000465471 ZNF316A6NFI3 1004 aaPredicted RBP27.58■■■□□ 2.01
SKA3-205ENST00000465471 DDB1Q16531 1140 aa27.58■■■□□ 2.01
SKA3-205ENST00000465471 UPF1Q92900 1129 aaKnown RBP eCLIP27.58■■■□□ 2.01
SKA3-205ENST00000465471 PARD3Q8TEW0 1356 aa27.58■■■□□ 2.01
SKA3-205ENST00000465471 MTHFSP49914 203 aa27.57■■■□□ 2
SKA3-205ENST00000465471 COL3A1P02461 1466 aaPredicted RBP27.57■■■□□ 2
SKA3-205ENST00000465471 SHANK3Q9BYB0 1731 aa27.55■■■□□ 2
SKA3-205ENST00000465471 PDE3BQ13370 1112 aa27.55■■■□□ 2
SKA3-205ENST00000465471 CNGB1Q14028 1251 aaPredicted RBP27.55■■■□□ 2
SKA3-205ENST00000465471 USHBP1Q8N6Y0 703 aa27.55■■■□□ 2
SKA3-205ENST00000465471 EYA1Q99502 592 aa27.55■■■□□ 2
SKA3-205ENST00000465471 OVOS2A0A0G2JMS6 1433 aa27.55■■■□□ 2
SKA3-205ENST00000465471 IGSF1Q8N6C5 1336 aa27.53■■■□□ 2
SKA3-205ENST00000465471 BCL9O00512 1426 aa27.52■■■□□ 2
SKA3-205ENST00000465471 FAM182BQ5T319 152 aa27.52■■■□□ 2
SKA3-205ENST00000465471 EXOC5O00471 708 aa27.51■■□□□ 1.99
SKA3-205ENST00000465471 PPP2R1AP30153 589 aa27.51■■□□□ 1.99
SKA3-205ENST00000465471 IL13P35225 146 aa27.51■■□□□ 1.99
SKA3-205ENST00000465471 PKD1L3Q7Z443 1732 aa27.5■■□□□ 1.99
SKA3-205ENST00000465471 MARCH10Q8NA82 808 aaPredicted RBP27.5■■□□□ 1.99
SKA3-205ENST00000465471 FAM196AQ6ZSG2 479 aa27.49■■□□□ 1.99
SKA3-205ENST00000465471 PLEKHG2Q9H7P9 1386 aa27.48■■□□□ 1.99
SKA3-205ENST00000465471 SBF2Q86WG5 1849 aa27.48■■□□□ 1.99
SKA3-205ENST00000465471 TNS1Q9HBL0 1735 aaKnown RBP27.48■■□□□ 1.99
SKA3-205ENST00000465471 RAPGEF4Q8WZA2 1011 aa27.47■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms