RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 CFAP70Q5T0N1 1121 aa7.95□□□□□ -1.14
VPS41-210ENST00000462429 TBC1D9Q6ZT07 1266 aa7.95□□□□□ -1.14
VPS41-210ENST00000462429 CCDC125Q86Z20 511 aa7.95□□□□□ -1.14
VPS41-210ENST00000462429 SEPT12Q8IYM1 358 aa7.95□□□□□ -1.14
VPS41-210ENST00000462429 GIGYF1O75420 1035 aaPredicted RBP7.94□□□□□ -1.14
VPS41-210ENST00000462429 RFX1P22670 979 aa7.94□□□□□ -1.14
VPS41-210ENST00000462429 LMOD1P29536 600 aaPredicted RBP7.94□□□□□ -1.14
VPS41-210ENST00000462429 ARID5BQ14865 1188 aa7.94□□□□□ -1.14
VPS41-210ENST00000462429 MAP7D1Q3KQU3 841 aa7.94□□□□□ -1.14
VPS41-210ENST00000462429 PHTF2Q8N3S3 785 aa7.94□□□□□ -1.14
VPS41-210ENST00000462429 MPNDQ8N594 471 aa7.94□□□□□ -1.14
VPS41-210ENST00000462429 KCTD15Q96SI1 283 aaPredicted RBP7.94□□□□□ -1.14
VPS41-210ENST00000462429 MAFBQ9Y5Q3 323 aaPredicted RBP7.94□□□□□ -1.14
VPS41-210ENST00000462429 ESPNB1AK53 854 aa7.93□□□□□ -1.14
VPS41-210ENST00000462429 LZTS3O60299 673 aaPredicted RBP7.93□□□□□ -1.14
VPS41-210ENST00000462429 PPP1R15AO75807 674 aaPredicted RBP7.93□□□□□ -1.14
VPS41-210ENST00000462429 HOMEZQ8IX15 550 aa7.93□□□□□ -1.14
VPS41-210ENST00000462429 MRGPRX2Q96LB1 330 aa7.93□□□□□ -1.14
VPS41-210ENST00000462429 CDK15Q96Q40 435 aa7.93□□□□□ -1.14
VPS41-210ENST00000462429 USP17L5A8MUK1 530 aa7.92□□□□□ -1.14
VPS41-210ENST00000462429 SIAH2O43255 324 aa7.92□□□□□ -1.14
VPS41-210ENST00000462429 PLEKHM2Q8IWE5 1019 aa7.92□□□□□ -1.14
VPS41-210ENST00000462429 PLPP7Q8NBV4 271 aa7.92□□□□□ -1.14
VPS41-210ENST00000462429 TRIM52Q96A61 297 aa7.92□□□□□ -1.14
VPS41-210ENST00000462429 PBXIP1Q96AQ6 731 aa7.92□□□□□ -1.14
VPS41-210ENST00000462429 TLL2Q9Y6L7 1015 aa7.92□□□□□ -1.14
VPS41-210ENST00000462429 USP17L3A6NCW0 530 aa7.91□□□□□ -1.14
VPS41-210ENST00000462429 USP17L4A6NCW7 530 aa7.91□□□□□ -1.14
VPS41-210ENST00000462429 FOXC1Q12948 553 aa7.91□□□□□ -1.14
VPS41-210ENST00000462429 USP17L2Q6R6M4 530 aa7.91□□□□□ -1.14
VPS41-210ENST00000462429 USP17L1Q7RTZ2 530 aa7.91□□□□□ -1.14
VPS41-210ENST00000462429 CHIC2Q9UKJ5 165 aa7.91□□□□□ -1.14
VPS41-210ENST00000462429 DOLKQ9UPQ8 538 aa7.91□□□□□ -1.14
VPS41-210ENST00000462429 ADH1CP00326 375 aa7.9□□□□□ -1.14
VPS41-210ENST00000462429 FSHRP23945 695 aa7.9□□□□□ -1.14
VPS41-210ENST00000462429 RAB15P59190 212 aa7.9□□□□□ -1.14
VPS41-210ENST00000462429 EML3Q32P44 896 aa7.9□□□□□ -1.14
VPS41-210ENST00000462429 INTS6LQ5JSJ4 861 aaKnown RBP7.9□□□□□ -1.14
VPS41-210ENST00000462429 ACIN1Q9UKV3 1341 aaKnown RBP7.89□□□□□ -1.15
VPS41-210ENST00000462429 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.89□□□□□ -1.15
VPS41-210ENST00000462429 RGS20O76081 388 aa7.89□□□□□ -1.15
VPS41-210ENST00000462429 DHX9Q08211 1270 aaKnown RBP7.89□□□□□ -1.15
VPS41-210ENST00000462429 NR5A1Q13285 461 aa7.89□□□□□ -1.15
VPS41-210ENST00000462429 NCOA4Q13772 614 aa7.89□□□□□ -1.15
VPS41-210ENST00000462429 CCDC85AQ96PX6 553 aaPredicted RBP7.89□□□□□ -1.15
VPS41-210ENST00000462429 PKD2L1Q9P0L9 805 aa7.89□□□□□ -1.15
VPS41-210ENST00000462429 PCDHB11Q9Y5F2 797 aa7.89□□□□□ -1.15
VPS41-210ENST00000462429 GRM5P41594 1212 aa7.88□□□□□ -1.15
VPS41-210ENST00000462429 TRAF7Q6Q0C0 670 aa7.88□□□□□ -1.15
VPS41-210ENST00000462429 DEPDC4Q8N2C3 294 aa7.88□□□□□ -1.15
VPS41-210ENST00000462429 SNIP1Q8TAD8 396 aaKnown RBP7.88□□□□□ -1.15
VPS41-210ENST00000462429 SIRT1Q96EB6 747 aa7.88□□□□□ -1.15
VPS41-210ENST00000462429 VRTNQ9H8Y1 702 aa7.88□□□□□ -1.15
VPS41-210ENST00000462429 ALDH1A1P00352 501 aa7.87□□□□□ -1.15
VPS41-210ENST00000462429 OXLD1Q5BKU9 147 aa7.87□□□□□ -1.15
VPS41-210ENST00000462429 WASF2Q9Y6W5 498 aa7.87□□□□□ -1.15
VPS41-210ENST00000462429 TTC24A2A3L6 582 aaPredicted RBP7.86□□□□□ -1.15
VPS41-210ENST00000462429 ATP5J2-PTCD1G3V325 749 aa7.86□□□□□ -1.15
VPS41-210ENST00000462429 ERVH48-1M5A8F1 160 aa7.86□□□□□ -1.15
VPS41-210ENST00000462429 GDF9O60383 454 aa7.86□□□□□ -1.15
VPS41-210ENST00000462429 SRPK2P78362 688 aaKnown RBP7.86□□□□□ -1.15
VPS41-210ENST00000462429 USP4Q13107 963 aa7.86□□□□□ -1.15
VPS41-210ENST00000462429 TSGA10IPQ3SY00 556 aa7.86□□□□□ -1.15
VPS41-210ENST00000462429 TRIM50Q86XT4 487 aa7.86□□□□□ -1.15
VPS41-210ENST00000462429 CCDC116Q8IYX3 515 aa7.86□□□□□ -1.15
VPS41-210ENST00000462429 CYP4X1Q8N118 509 aa7.86□□□□□ -1.15
VPS41-210ENST00000462429 ESF1Q9H501 851 aaKnown RBP7.86□□□□□ -1.15
VPS41-210ENST00000462429 MKRN1Q9UHC7 482 aaKnown RBP7.86□□□□□ -1.15
VPS41-210ENST00000462429 NOD1Q9Y239 953 aa7.86□□□□□ -1.15
VPS41-210ENST00000462429 MYCP01106 439 aaPredicted RBP7.85□□□□□ -1.15
VPS41-210ENST00000462429 KANK4Q5T7N3 995 aaPredicted RBP7.85□□□□□ -1.15
VPS41-210ENST00000462429 TNFRSF10AO00220 468 aa7.84□□□□□ -1.15
VPS41-210ENST00000462429 ATG7O95352 703 aa7.84□□□□□ -1.15
VPS41-210ENST00000462429 ATP1A2P50993 1020 aa7.84□□□□□ -1.15
VPS41-210ENST00000462429 PRR20EP86478 221 aa7.84□□□□□ -1.15
VPS41-210ENST00000462429 PRR20CP86479 221 aa7.84□□□□□ -1.15
VPS41-210ENST00000462429 PRR20DP86480 221 aa7.84□□□□□ -1.15
VPS41-210ENST00000462429 PRR20BP86481 221 aa7.84□□□□□ -1.15
VPS41-210ENST00000462429 PRR20AP86496 221 aa7.84□□□□□ -1.15
VPS41-210ENST00000462429 CDCA8Q53HL2 280 aa7.84□□□□□ -1.15
VPS41-210ENST00000462429 LARP1Q6PKG0 1096 aaKnown RBP7.84□□□□□ -1.15
VPS41-210ENST00000462429 CDCA7Q9BWT1 371 aaPredicted RBP7.84□□□□□ -1.15
VPS41-210ENST00000462429 PGPEP1Q9NXJ5 209 aa7.84□□□□□ -1.15
VPS41-210ENST00000462429 RASA1P20936 1047 aa7.83□□□□□ -1.16
VPS41-210ENST00000462429 NNTQ13423 1086 aa7.83□□□□□ -1.16
VPS41-210ENST00000462429 PPP1R26Q5T8A7 1209 aaPredicted RBP7.83□□□□□ -1.16
VPS41-210ENST00000462429 EMILIN1Q9Y6C2 1016 aa7.83□□□□□ -1.16
VPS41-210ENST00000462429 FAM196BA6NMK8 535 aa7.82□□□□□ -1.16
VPS41-210ENST00000462429 NR3C2P08235 984 aa7.82□□□□□ -1.16
VPS41-210ENST00000462429 CSB-PGBD3P0DP91 1061 aa7.82□□□□□ -1.16
VPS41-210ENST00000462429 MYT1Q01538 1121 aa7.82□□□□□ -1.16
VPS41-210ENST00000462429 PDE4CQ08493 712 aa7.82□□□□□ -1.16
VPS41-210ENST00000462429 CC2D2BQ6DHV5 1058 aa7.82□□□□□ -1.16
VPS41-210ENST00000462429 TOR4AQ9NXH8 423 aa7.82□□□□□ -1.16
VPS41-210ENST00000462429 ERVK-9P63128 1117 aa7.81□□□□□ -1.16
VPS41-210ENST00000462429 GTF2IP78347 998 aa7.81□□□□□ -1.16
VPS41-210ENST00000462429 OGFOD1Q8N543 542 aa7.81□□□□□ -1.16
VPS41-210ENST00000462429 CYLDQ9NQC7 956 aa7.81□□□□□ -1.16
VPS41-210ENST00000462429 TMPRSS4Q9NRS4 437 aa7.81□□□□□ -1.16
VPS41-210ENST00000462429 USP17L15C9J2P7 530 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms