RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 AEBP2Q6ZN18 517 aaPredicted RBP19.94■□□□□ 0.78
VPS41-210ENST00000462429 CHIC1Q5VXU3 224 aa19.77■□□□□ 0.76
VPS41-210ENST00000462429 PHF23Q9BUL5 403 aaPredicted RBP17.37■□□□□ 0.37
VPS41-210ENST00000462429 SENP3Q9H4L4 574 aaPredicted RBP16.96■□□□□ 0.31
VPS41-210ENST00000462429 PLPPR3Q6T4P5 718 aa16.19■□□□□ 0.18
VPS41-210ENST00000462429 FOXD1Q16676 465 aa15.66■□□□□ 0.1
VPS41-210ENST00000462429 ADRA2BP18089 450 aa15.25■□□□□ 0.03
VPS41-210ENST00000462429 PPP6R1Q9UPN7 881 aa15.23■□□□□ 0.03
VPS41-210ENST00000462429 PIAS4Q8N2W9 510 aaPredicted RBP14.87□□□□□ -0.03
VPS41-210ENST00000462429 MSH5O43196 834 aa14.41□□□□□ -0.1
VPS41-210ENST00000462429 PPP4R3CPQ6ZMV5 832 aa14.28□□□□□ -0.12
VPS41-210ENST00000462429 KCNA4P22459 653 aa14.19□□□□□ -0.14
VPS41-210ENST00000462429 SCAF1Q9H7N4 1312 aaKnown RBP14.04□□□□□ -0.16
VPS41-210ENST00000462429 NCBP3Q53F19 620 aaKnown RBP14.02□□□□□ -0.17
VPS41-210ENST00000462429 CNKSR2Q8WXI2 1034 aa13.84□□□□□ -0.19
VPS41-210ENST00000462429 NPM3O75607 178 aaKnown RBP13.75□□□□□ -0.21
VPS41-210ENST00000462429 MAPK8IP2Q13387 824 aaPredicted RBP13.75□□□□□ -0.21
VPS41-210ENST00000462429 SLC4A1APQ9BWU0 796 aaKnown RBP13.6□□□□□ -0.23
VPS41-210ENST00000462429 DMRT2Q9Y5R5 561 aa13.56□□□□□ -0.24
VPS41-210ENST00000462429 RNF216Q9NWF9 866 aaPredicted RBP13.51□□□□□ -0.25
VPS41-210ENST00000462429 EHMT2Q96KQ7 1210 aa13.47□□□□□ -0.25
VPS41-210ENST00000462429 HOXD11P31277 338 aaPredicted RBP13.37□□□□□ -0.27
VPS41-210ENST00000462429 DNAJC5BQ9UF47 199 aa13.34□□□□□ -0.27
VPS41-210ENST00000462429 CSRNP3Q8WYN3 585 aa13.19□□□□□ -0.3
VPS41-210ENST00000462429 ZBTB22O15209 634 aa13.04□□□□□ -0.32
VPS41-210ENST00000462429 FOXD4L1Q9NU39 408 aa13.04□□□□□ -0.32
VPS41-210ENST00000462429 DCAF8L1A6NGE4 600 aa12.98□□□□□ -0.33
VPS41-210ENST00000462429 SLC4A2P04920 1241 aa12.91□□□□□ -0.34
VPS41-210ENST00000462429 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.78□□□□□ -0.36
VPS41-210ENST00000462429 MYCNP04198 464 aaPredicted RBP12.74□□□□□ -0.37
VPS41-210ENST00000462429 POTEDQ86YR6 584 aa12.64□□□□□ -0.39
VPS41-210ENST00000462429 ATXN8OSP0DMR3 200 aa12.57□□□□□ -0.4
VPS41-210ENST00000462429 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.56□□□□□ -0.4
VPS41-210ENST00000462429 HNRNPUL2Q1KMD3 747 aaKnown RBP12.56□□□□□ -0.4
VPS41-210ENST00000462429 U3KPZ7 1027 aaPredicted RBP12.55□□□□□ -0.4
VPS41-210ENST00000462429 SAMD1Q6SPF0 538 aaPredicted RBP12.51□□□□□ -0.41
VPS41-210ENST00000462429 APLP2Q06481 763 aa12.39□□□□□ -0.43
VPS41-210ENST00000462429 RNF39Q9H2S5 420 aa12.33□□□□□ -0.44
VPS41-210ENST00000462429 ATF5Q9Y2D1 282 aaPredicted RBP12.31□□□□□ -0.44
VPS41-210ENST00000462429 C1QBPQ07021 282 aaKnown RBP12.24□□□□□ -0.45
VPS41-210ENST00000462429 ZNF219Q9P2Y4 722 aaPredicted RBP12.15□□□□□ -0.46
VPS41-210ENST00000462429 SPINK5Q9NQ38 1064 aaPredicted RBP12.12□□□□□ -0.47
VPS41-210ENST00000462429 CAPN15O75808 1086 aa12.11□□□□□ -0.47
VPS41-210ENST00000462429 TRHP20396 242 aaPredicted RBP12.09□□□□□ -0.47
VPS41-210ENST00000462429 POLA2Q14181 598 aa11.95□□□□□ -0.5
VPS41-210ENST00000462429 FKBP8Q14318 412 aa11.94□□□□□ -0.5
VPS41-210ENST00000462429 ABCB7O75027 752 aa11.87□□□□□ -0.51
VPS41-210ENST00000462429 FBLN2P98095 1184 aa11.87□□□□□ -0.51
VPS41-210ENST00000462429 CACNB1Q02641 598 aaPredicted RBP11.86□□□□□ -0.51
VPS41-210ENST00000462429 ZBTB12Q9Y330 459 aaPredicted RBP11.83□□□□□ -0.52
VPS41-210ENST00000462429 DSG3P32926 999 aa11.82□□□□□ -0.52
VPS41-210ENST00000462429 MKRN4PQ13434 485 aaPredicted RBP11.8□□□□□ -0.52
VPS41-210ENST00000462429 SPDYE4A6NLX3 237 aa11.7□□□□□ -0.54
VPS41-210ENST00000462429 OSCARQ8IYS5 282 aa11.53□□□□□ -0.56
VPS41-210ENST00000462429 PROM2Q8N271 834 aa11.52□□□□□ -0.57
VPS41-210ENST00000462429 SPDYE2BA6NHP3 402 aa11.5□□□□□ -0.57
VPS41-210ENST00000462429 SPDYE6P0CI01 402 aa11.5□□□□□ -0.57
VPS41-210ENST00000462429 SPDYE2Q495Y8 402 aa11.5□□□□□ -0.57
VPS41-210ENST00000462429 FBXO3Q9UK99 471 aa11.5□□□□□ -0.57
VPS41-210ENST00000462429 ZNF692Q9BU19 519 aaPredicted RBP11.48□□□□□ -0.57
VPS41-210ENST00000462429 SSUH2Q9Y2M2 353 aa11.41□□□□□ -0.58
VPS41-210ENST00000462429 AMER1Q5JTC6 1135 aaPredicted RBP11.34□□□□□ -0.59
VPS41-210ENST00000462429 PABPN1Q86U42 306 aaKnown RBP eCLIP11.33□□□□□ -0.6
VPS41-210ENST00000462429 RBM42Q9BTD8 480 aaKnown RBP11.32□□□□□ -0.6
VPS41-210ENST00000462429 VASPP50552 380 aaPredicted RBP11.29□□□□□ -0.6
VPS41-210ENST00000462429 RTN4Q9NQC3 1192 aaKnown RBP11.26□□□□□ -0.61
VPS41-210ENST00000462429 STAG3Q9UJ98 1225 aa11.25□□□□□ -0.61
VPS41-210ENST00000462429 AKT1S1Q96B36 256 aa11.2□□□□□ -0.62
VPS41-210ENST00000462429 IFNLR1Q8IU57 520 aaPredicted RBP11.13□□□□□ -0.63
VPS41-210ENST00000462429 PLCD3Q8N3E9 789 aa11.11□□□□□ -0.63
VPS41-210ENST00000462429 SPDYE1Q8NFV5 336 aaPredicted RBP11.11□□□□□ -0.63
VPS41-210ENST00000462429 MIER1Q8N108 512 aa11.09□□□□□ -0.63
VPS41-210ENST00000462429 REM2Q8IYK8 340 aaPredicted RBP11.07□□□□□ -0.64
VPS41-210ENST00000462429 KLHL34Q8N239 644 aa11.07□□□□□ -0.64
VPS41-210ENST00000462429 PLEKHG5O94827 1062 aa11.06□□□□□ -0.64
VPS41-210ENST00000462429 CLEC11AQ9Y240 323 aa11.03□□□□□ -0.64
VPS41-210ENST00000462429 SPOCK2Q92563 424 aa11□□□□□ -0.65
VPS41-210ENST00000462429 ZBTB47Q9UFB7 747 aaPredicted RBP11□□□□□ -0.65
VPS41-210ENST00000462429 PRR29P0C7W0 189 aa10.98□□□□□ -0.65
VPS41-210ENST00000462429 PITPNM1O00562 1244 aa10.93□□□□□ -0.66
VPS41-210ENST00000462429 CREBZFQ9NS37 354 aa10.85□□□□□ -0.67
VPS41-210ENST00000462429 PKD2Q13563 968 aa10.84□□□□□ -0.67
VPS41-210ENST00000462429 CIZ1Q9ULV3 898 aaPredicted RBP10.79□□□□□ -0.68
VPS41-210ENST00000462429 ECM2O94769 699 aaPredicted RBP10.78□□□□□ -0.68
VPS41-210ENST00000462429 MNX1P50219 401 aaPredicted RBP10.75□□□□□ -0.69
VPS41-210ENST00000462429 NPM1P06748 294 aaKnown RBP eCLIP10.74□□□□□ -0.69
VPS41-210ENST00000462429 DCAF8L2P0C7V8 631 aa10.74□□□□□ -0.69
VPS41-210ENST00000462429 NUBP1P53384 320 aa10.74□□□□□ -0.69
VPS41-210ENST00000462429 GSE1Q14687 1217 aa10.74□□□□□ -0.69
VPS41-210ENST00000462429 TRIM41Q8WV44 630 aa10.73□□□□□ -0.69
VPS41-210ENST00000462429 CHRDL2Q6WN34 429 aa10.71□□□□□ -0.69
VPS41-210ENST00000462429 DCAF8Q5TAQ9 597 aa10.7□□□□□ -0.7
VPS41-210ENST00000462429 CHADLQ6NUI6 762 aa10.7□□□□□ -0.7
VPS41-210ENST00000462429 FAM212AQ96EL1 285 aa10.7□□□□□ -0.7
VPS41-210ENST00000462429 PRKAR2AP13861 404 aaKnown RBP10.68□□□□□ -0.7
VPS41-210ENST00000462429 FXR2P51116 673 aaKnown RBP eCLIP10.68□□□□□ -0.7
VPS41-210ENST00000462429 FARP1Q9Y4F1 1045 aaPredicted RBP10.66□□□□□ -0.7
VPS41-210ENST00000462429 RASEFQ8IZ41 740 aa10.64□□□□□ -0.71
VPS41-210ENST00000462429 RGL2O15211 777 aa10.62□□□□□ -0.71
VPS41-210ENST00000462429 SLC24A1O60721 1099 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms