RNA–Protein interactions for RNA: ENST00000461154.1

SHANK1-205, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 4

Gene SHANK1, Length 558 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-205ENST00000461154 UPF1Q92900 1129 aaKnown RBP eCLIP22.34■■□□□ 1.17
SHANK1-205ENST00000461154 NFAT5O94916 1531 aa22.33■■□□□ 1.17
SHANK1-205ENST00000461154 CAMTA1Q9Y6Y1 1673 aa22.33■■□□□ 1.16
SHANK1-205ENST00000461154 SPATA31A1Q5TZJ5 1347 aa22.32■■□□□ 1.16
SHANK1-205ENST00000461154 FAM98CQ17RN3 349 aaKnown RBP22.32■■□□□ 1.16
SHANK1-205ENST00000461154 GGNBP2Q9H3C7 697 aa22.32■■□□□ 1.16
SHANK1-205ENST00000461154 A0A0G2JS52 829 aa22.31■■□□□ 1.16
SHANK1-205ENST00000461154 MYT1Q01538 1121 aa22.31■■□□□ 1.16
SHANK1-205ENST00000461154 LMO7Q8WWI1 1683 aa22.3■■□□□ 1.16
SHANK1-205ENST00000461154 LARP1Q6PKG0 1096 aaKnown RBP22.3■■□□□ 1.16
SHANK1-205ENST00000461154 KNSTRNQ9Y448 316 aa22.29■■□□□ 1.16
SHANK1-205ENST00000461154 NSD2O96028 1365 aa22.28■■□□□ 1.16
SHANK1-205ENST00000461154 ABCC6O95255 1503 aa22.28■■□□□ 1.16
SHANK1-205ENST00000461154 COL5A2P05997 1499 aaPredicted RBP22.28■■□□□ 1.16
SHANK1-205ENST00000461154 KRT27Q7Z3Y8 459 aa22.27■■□□□ 1.16
SHANK1-205ENST00000461154 USP35Q9P2H5 1018 aa22.27■■□□□ 1.16
SHANK1-205ENST00000461154 AXIN2Q9Y2T1 843 aa22.27■■□□□ 1.16
SHANK1-205ENST00000461154 THRAP3Q9Y2W1 955 aaKnown RBP22.27■■□□□ 1.16
SHANK1-205ENST00000461154 LTN1O94822 1766 aa22.27■■□□□ 1.16
SHANK1-205ENST00000461154 ANKRD26Q9UPS8 1709 aa22.26■■□□□ 1.15
SHANK1-205ENST00000461154 BARGINQ6ZT62 677 aa22.26■■□□□ 1.15
SHANK1-205ENST00000461154 TCP11L2Q8N4U5 519 aa22.26■■□□□ 1.15
SHANK1-205ENST00000461154 COL18A1P39060 1754 aa22.25■■□□□ 1.15
SHANK1-205ENST00000461154 TOM1L2Q6ZVM7 507 aa22.24■■□□□ 1.15
SHANK1-205ENST00000461154 CRB1P82279 1406 aa22.23■■□□□ 1.15
SHANK1-205ENST00000461154 WDR17Q8IZU2 1322 aa22.23■■□□□ 1.15
SHANK1-205ENST00000461154 CSB-PGBD3P0DP91 1061 aa22.22■■□□□ 1.15
SHANK1-205ENST00000461154 CCDC125Q86Z20 511 aa22.22■■□□□ 1.15
SHANK1-205ENST00000461154 PER1O15534 1290 aaPredicted RBP22.2■■□□□ 1.14
SHANK1-205ENST00000461154 MAP3K19Q56UN5 1328 aa22.19■■□□□ 1.14
SHANK1-205ENST00000461154 RGPD5Q99666 1765 aa22.18■■□□□ 1.14
SHANK1-205ENST00000461154 BLMP54132 1417 aaPredicted RBP22.18■■□□□ 1.14
SHANK1-205ENST00000461154 RTL1A6NKG5 1358 aa22.18■■□□□ 1.14
SHANK1-205ENST00000461154 AMPHP49418 695 aa22.18■■□□□ 1.14
SHANK1-205ENST00000461154 AMER1Q5JTC6 1135 aaPredicted RBP22.18■■□□□ 1.14
SHANK1-205ENST00000461154 IP6K1Q92551 441 aa22.18■■□□□ 1.14
SHANK1-205ENST00000461154 CARD10Q9BWT7 1032 aa22.18■■□□□ 1.14
SHANK1-205ENST00000461154 BRWD3Q6RI45 1802 aa22.17■■□□□ 1.14
SHANK1-205ENST00000461154 THSD7AQ9UPZ6 1657 aa22.17■■□□□ 1.14
SHANK1-205ENST00000461154 KIF24Q5T7B8 1368 aa22.16■■□□□ 1.14
SHANK1-205ENST00000461154 FBLN1P23142 703 aa22.16■■□□□ 1.14
SHANK1-205ENST00000461154 PDE3BQ13370 1112 aa22.16■■□□□ 1.14
SHANK1-205ENST00000461154 RRS1Q15050 365 aaKnown RBP22.16■■□□□ 1.14
SHANK1-205ENST00000461154 MORC1Q86VD1 984 aa22.16■■□□□ 1.14
SHANK1-205ENST00000461154 NPC1L1Q9UHC9 1359 aa22.15■■□□□ 1.14
SHANK1-205ENST00000461154 ERBB3P21860 1342 aa22.15■■□□□ 1.14
SHANK1-205ENST00000461154 CDCA7Q9BWT1 371 aaPredicted RBP22.15■■□□□ 1.14
SHANK1-205ENST00000461154 HOXC9P31274 260 aa22.14■■□□□ 1.13
SHANK1-205ENST00000461154 ANKRD24Q8TF21 1146 aa22.14■■□□□ 1.13
SHANK1-205ENST00000461154 SF3B2Q13435 895 aaKnown RBP22.13■■□□□ 1.13
SHANK1-205ENST00000461154 FLT4P35916 1363 aa22.12■■□□□ 1.13
SHANK1-205ENST00000461154 TNNT2P45379 298 aaPredicted RBP22.12■■□□□ 1.13
SHANK1-205ENST00000461154 NLRP2Q9NX02 1062 aa22.12■■□□□ 1.13
SHANK1-205ENST00000461154 MAP2P11137 1827 aaKnown RBP22.12■■□□□ 1.13
SHANK1-205ENST00000461154 CC2D1BQ5T0F9 858 aaKnown RBP22.11■■□□□ 1.13
SHANK1-205ENST00000461154 FAM196AQ6ZSG2 479 aa22.11■■□□□ 1.13
SHANK1-205ENST00000461154 FAM208AQ9UK61 1670 aaKnown RBP22.11■■□□□ 1.13
SHANK1-205ENST00000461154 FAM182BQ5T319 152 aa22.1■■□□□ 1.13
SHANK1-205ENST00000461154 PEAK1Q9H792 1746 aa22.09■■□□□ 1.13
SHANK1-205ENST00000461154 SMG6Q86US8 1419 aaKnown RBP22.09■■□□□ 1.13
SHANK1-205ENST00000461154 PPM1GO15355 546 aaPredicted RBP22.09■■□□□ 1.13
SHANK1-205ENST00000461154 DDB1Q16531 1140 aa22.09■■□□□ 1.13
SHANK1-205ENST00000461154 EMILIN1Q9Y6C2 1016 aa22.09■■□□□ 1.13
SHANK1-205ENST00000461154 LTV1Q96GA3 475 aaPredicted RBP22.08■■□□□ 1.13
SHANK1-205ENST00000461154 POLKQ9UBT6 870 aa22.08■■□□□ 1.13
SHANK1-205ENST00000461154 INSRP06213 1382 aa22.08■■□□□ 1.12
SHANK1-205ENST00000461154 EXOC5O00471 708 aa22.06■■□□□ 1.12
SHANK1-205ENST00000461154 DDX10Q13206 875 aaKnown RBP22.06■■□□□ 1.12
SHANK1-205ENST00000461154 ZNF316A6NFI3 1004 aaPredicted RBP22.05■■□□□ 1.12
SHANK1-205ENST00000461154 HSP90AB2PQ58FF8 381 aa22.05■■□□□ 1.12
SHANK1-205ENST00000461154 PARP4Q9UKK3 1724 aaKnown RBP22.04■■□□□ 1.12
SHANK1-205ENST00000461154 IL2RBP14784 551 aa22.04■■□□□ 1.12
SHANK1-205ENST00000461154 CNGB1Q14028 1251 aaPredicted RBP22.04■■□□□ 1.12
SHANK1-205ENST00000461154 DISP2A7MBM2 1401 aa22.04■■□□□ 1.12
SHANK1-205ENST00000461154 BAG6P46379 1132 aa22.03■■□□□ 1.12
SHANK1-205ENST00000461154 WNK3Q9BYP7 1800 aa22.02■■□□□ 1.12
SHANK1-205ENST00000461154 DEFB132Q7Z7B7 95 aa22.01■■□□□ 1.11
SHANK1-205ENST00000461154 TRIM37O94972 964 aa22■■□□□ 1.11
SHANK1-205ENST00000461154 OVOS2A0A0G2JMS6 1433 aa21.99■■□□□ 1.11
SHANK1-205ENST00000461154 RGPD2P0DJD1 1756 aa21.98■■□□□ 1.11
SHANK1-205ENST00000461154 MARCH10Q8NA82 808 aaPredicted RBP21.98■■□□□ 1.11
SHANK1-205ENST00000461154 LRRC37A3O60309 1634 aa21.98■■□□□ 1.11
SHANK1-205ENST00000461154 MTHFSP49914 203 aa21.97■■□□□ 1.11
SHANK1-205ENST00000461154 NBPF6Q5VWK0 638 aa21.96■■□□□ 1.11
SHANK1-205ENST00000461154 NBPF4Q96M43 638 aa21.96■■□□□ 1.11
SHANK1-205ENST00000461154 TNS2Q63HR2 1409 aa21.95■■□□□ 1.1
SHANK1-205ENST00000461154 RGPD1P0DJD0 1748 aa21.94■■□□□ 1.1
SHANK1-205ENST00000461154 APBA3O96018 575 aa21.94■■□□□ 1.1
SHANK1-205ENST00000461154 EIF4A2Q14240 407 aaKnown RBP21.94■■□□□ 1.1
SHANK1-205ENST00000461154 BCL9O00512 1426 aa21.94■■□□□ 1.1
SHANK1-205ENST00000461154 EN1Q05925 392 aaPredicted RBP21.93■■□□□ 1.1
SHANK1-205ENST00000461154 PARD3Q8TEW0 1356 aa21.92■■□□□ 1.1
SHANK1-205ENST00000461154 EP400Q96L91 3159 aa21.91■■□□□ 1.1
SHANK1-205ENST00000461154 USHBP1Q8N6Y0 703 aa21.91■■□□□ 1.1
SHANK1-205ENST00000461154 RAPGEF4Q8WZA2 1011 aa21.91■■□□□ 1.1
SHANK1-205ENST00000461154 PPP2R1AP30153 589 aa21.9■■□□□ 1.1
SHANK1-205ENST00000461154 RALBP1Q15311 655 aa21.9■■□□□ 1.1
SHANK1-205ENST00000461154 EYA1Q99502 592 aa21.9■■□□□ 1.1
SHANK1-205ENST00000461154 BCL11BQ9C0K0 894 aaPredicted RBP21.9■■□□□ 1.1
SHANK1-205ENST00000461154 NCAPD2Q15021 1401 aa21.89■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms