RNA–Protein interactions for RNA: ENST00000460235.1

HDAC4-206, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 343 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-206ENST00000460235 CDK12Q9NYV4 1490 aaPredicted RBP16.52■□□□□ 0.23
HDAC4-206ENST00000460235 FAM83GA6ND36 823 aa16.5■□□□□ 0.23
HDAC4-206ENST00000460235 CSB-PGBD3P0DP91 1061 aa16.5■□□□□ 0.23
HDAC4-206ENST00000460235 MRS2Q9HD23 443 aa16.5■□□□□ 0.23
HDAC4-206ENST00000460235 WDR43Q15061 677 aaKnown RBP eCLIP16.49■□□□□ 0.23
HDAC4-206ENST00000460235 MAP2P11137 1827 aaKnown RBP16.49■□□□□ 0.23
HDAC4-206ENST00000460235 MARF1Q9Y4F3 1742 aaKnown RBP16.48■□□□□ 0.23
HDAC4-206ENST00000460235 CRYBG1Q9Y4K1 1723 aa16.48■□□□□ 0.23
HDAC4-206ENST00000460235 NEFMP07197 916 aa16.48■□□□□ 0.23
HDAC4-206ENST00000460235 FBLN1P23142 703 aa16.48■□□□□ 0.23
HDAC4-206ENST00000460235 CHRNA2Q15822 529 aa16.48■□□□□ 0.23
HDAC4-206ENST00000460235 C8orf37Q96NL8 207 aa16.48■□□□□ 0.23
HDAC4-206ENST00000460235 COL14A1Q05707 1796 aaKnown RBP16.47■□□□□ 0.23
HDAC4-206ENST00000460235 HSP90AB2PQ58FF8 381 aa16.47■□□□□ 0.23
HDAC4-206ENST00000460235 MIER1Q8N108 512 aa16.47■□□□□ 0.23
HDAC4-206ENST00000460235 BTG4Q9NY30 223 aa16.47■□□□□ 0.23
HDAC4-206ENST00000460235 ABCA3Q99758 1704 aa16.47■□□□□ 0.23
HDAC4-206ENST00000460235 FNBP4Q8N3X1 1017 aaPredicted RBP16.46■□□□□ 0.23
HDAC4-206ENST00000460235 ANKRD24Q8TF21 1146 aa16.46■□□□□ 0.23
HDAC4-206ENST00000460235 UNC5CLQ8IV45 518 aa16.45■□□□□ 0.22
HDAC4-206ENST00000460235 LTN1O94822 1766 aa16.45■□□□□ 0.22
HDAC4-206ENST00000460235 ERBB3P21860 1342 aa16.45■□□□□ 0.22
HDAC4-206ENST00000460235 WDR17Q8IZU2 1322 aa16.45■□□□□ 0.22
HDAC4-206ENST00000460235 ZNF772Q68DY9 489 aaPredicted RBP16.44■□□□□ 0.22
HDAC4-206ENST00000460235 TOM1L2Q6ZVM7 507 aa16.44■□□□□ 0.22
HDAC4-206ENST00000460235 LTV1Q96GA3 475 aaPredicted RBP16.44■□□□□ 0.22
HDAC4-206ENST00000460235 U2SURPO15042 1029 aaKnown RBP16.43■□□□□ 0.22
HDAC4-206ENST00000460235 EIF4A2Q14240 407 aaKnown RBP16.43■□□□□ 0.22
HDAC4-206ENST00000460235 ILDR1Q86SU0 546 aaPredicted RBP16.43■□□□□ 0.22
HDAC4-206ENST00000460235 STRN4Q9NRL3 753 aa16.43■□□□□ 0.22
HDAC4-206ENST00000460235 NLRP2Q9NX02 1062 aa16.43■□□□□ 0.22
HDAC4-206ENST00000460235 USP21Q9UK80 565 aa16.43■□□□□ 0.22
HDAC4-206ENST00000460235 U2AF1L5P0DN76 240 aaPredicted RBP16.42■□□□□ 0.22
HDAC4-206ENST00000460235 IL13P35225 146 aa16.42■□□□□ 0.22
HDAC4-206ENST00000460235 U2AF1Q01081 240 aaKnown RBP eCLIP16.42■□□□□ 0.22
HDAC4-206ENST00000460235 AXIN2Q9Y2T1 843 aa16.42■□□□□ 0.22
HDAC4-206ENST00000460235 FCHSD2O94868 740 aa16.41■□□□□ 0.22
HDAC4-206ENST00000460235 PHF23Q9BUL5 403 aaPredicted RBP16.41■□□□□ 0.22
HDAC4-206ENST00000460235 CDCA7Q9BWT1 371 aaPredicted RBP16.41■□□□□ 0.22
HDAC4-206ENST00000460235 CARD10Q9BWT7 1032 aa16.41■□□□□ 0.22
HDAC4-206ENST00000460235 TRPC5Q9UL62 973 aaPredicted RBP16.41■□□□□ 0.22
HDAC4-206ENST00000460235 THRAP3Q9Y2W1 955 aaKnown RBP16.41■□□□□ 0.22
HDAC4-206ENST00000460235 CCDC9Q9Y3X0 531 aaKnown RBP16.41■□□□□ 0.22
HDAC4-206ENST00000460235 SLIT2O94813 1529 aa16.4■□□□□ 0.22
HDAC4-206ENST00000460235 NWD2Q9ULI1 1742 aa16.4■□□□□ 0.22
HDAC4-206ENST00000460235 LRP6O75581 1613 aa16.4■□□□□ 0.22
HDAC4-206ENST00000460235 COL5A2P05997 1499 aaPredicted RBP16.4■□□□□ 0.22
HDAC4-206ENST00000460235 AFF2P51816 1311 aa16.4■□□□□ 0.22
HDAC4-206ENST00000460235 CRB1P82279 1406 aa16.39■□□□□ 0.21
HDAC4-206ENST00000460235 VPS72Q15906 364 aa16.39■□□□□ 0.21
HDAC4-206ENST00000460235 RAPGEF4Q8WZA2 1011 aa16.39■□□□□ 0.21
HDAC4-206ENST00000460235 CAMTA1Q9Y6Y1 1673 aa16.39■□□□□ 0.21
HDAC4-206ENST00000460235 PLEKHG2Q9H7P9 1386 aa16.38■□□□□ 0.21
HDAC4-206ENST00000460235 LMO7Q8WWI1 1683 aa16.38■□□□□ 0.21
HDAC4-206ENST00000460235 FAM208AQ9UK61 1670 aaKnown RBP16.38■□□□□ 0.21
HDAC4-206ENST00000460235 PNISRQ8TF01 805 aaKnown RBP16.38■□□□□ 0.21
HDAC4-206ENST00000460235 EYA1Q99502 592 aa16.38■□□□□ 0.21
HDAC4-206ENST00000460235 COL18A1P39060 1754 aa16.38■□□□□ 0.21
HDAC4-206ENST00000460235 PEAK1Q9H792 1746 aa16.37■□□□□ 0.21
HDAC4-206ENST00000460235 TCP11L2Q8N4U5 519 aa16.37■□□□□ 0.21
HDAC4-206ENST00000460235 IGSF1Q8N6C5 1336 aa16.37■□□□□ 0.21
HDAC4-206ENST00000460235 SULT6B1Q6IMI4 303 aa16.36■□□□□ 0.21
HDAC4-206ENST00000460235 LARP1Q6PKG0 1096 aaKnown RBP16.36■□□□□ 0.21
HDAC4-206ENST00000460235 MAPK8IP3Q9UPT6 1336 aa16.36■□□□□ 0.21
HDAC4-206ENST00000460235 COL3A1P02461 1466 aaPredicted RBP16.35■□□□□ 0.21
HDAC4-206ENST00000460235 TATP17735 454 aaPredicted RBP16.35■□□□□ 0.21
HDAC4-206ENST00000460235 AMOTQ4VCS5 1084 aa16.35■□□□□ 0.21
HDAC4-206ENST00000460235 NBPF6Q5VWK0 638 aa16.35■□□□□ 0.21
HDAC4-206ENST00000460235 NBPF4Q96M43 638 aa16.35■□□□□ 0.21
HDAC4-206ENST00000460235 QTRT2Q9H974 415 aaKnown RBP16.35■□□□□ 0.21
HDAC4-206ENST00000460235 PLCH1Q4KWH8 1693 aa16.34■□□□□ 0.21
HDAC4-206ENST00000460235 FAM9BQ8IZU0 186 aa16.34■□□□□ 0.21
HDAC4-206ENST00000460235 NGEFQ8N5V2 710 aa16.34■□□□□ 0.21
HDAC4-206ENST00000460235 SPATA31A5Q5VU36 1347 aa16.34■□□□□ 0.21
HDAC4-206ENST00000460235 SPATA31A7Q8IWB4 1347 aa16.34■□□□□ 0.21
HDAC4-206ENST00000460235 BCL9LQ86UU0 1499 aa16.34■□□□□ 0.21
HDAC4-206ENST00000460235 IL2RBP14784 551 aa16.33■□□□□ 0.2
HDAC4-206ENST00000460235 PLEKHO1Q53GL0 409 aaPredicted RBP16.33■□□□□ 0.2
HDAC4-206ENST00000460235 BARGINQ6ZT62 677 aa16.33■□□□□ 0.2
HDAC4-206ENST00000460235 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.33■□□□□ 0.2
HDAC4-206ENST00000460235 ADAMTS8Q9UP79 889 aa16.33■□□□□ 0.2
HDAC4-206ENST00000460235 SPG7Q9UQ90 795 aa16.33■□□□□ 0.2
HDAC4-206ENST00000460235 SPATA31A1Q5TZJ5 1347 aa16.33■□□□□ 0.2
HDAC4-206ENST00000460235 KDRP35968 1356 aa16.33■□□□□ 0.2
HDAC4-206ENST00000460235 RUNDC1Q96C34 613 aa16.32■□□□□ 0.2
HDAC4-206ENST00000460235 GJD4Q96KN9 370 aaPredicted RBP16.32■□□□□ 0.2
HDAC4-206ENST00000460235 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.32■□□□□ 0.2
HDAC4-206ENST00000460235 USP35Q9P2H5 1018 aa16.32■□□□□ 0.2
HDAC4-206ENST00000460235 HMOX1P09601 288 aa16.31■□□□□ 0.2
HDAC4-206ENST00000460235 RBM6P78332 1123 aaKnown RBP16.31■□□□□ 0.2
HDAC4-206ENST00000460235 CCDC184Q52MB2 194 aa16.31■□□□□ 0.2
HDAC4-206ENST00000460235 PRKAR2BP31323 418 aa16.3■□□□□ 0.2
HDAC4-206ENST00000460235 GAS2L2Q8NHY3 880 aa16.3■□□□□ 0.2
HDAC4-206ENST00000460235 RSPH6AQ9H0K4 717 aa16.3■□□□□ 0.2
HDAC4-206ENST00000460235 RGPD5Q99666 1765 aa16.3■□□□□ 0.2
HDAC4-206ENST00000460235 ATRNO75882 1429 aa16.29■□□□□ 0.2
HDAC4-206ENST00000460235 NCAPD2Q15021 1401 aa16.29■□□□□ 0.2
HDAC4-206ENST00000460235 EXOC5O00471 708 aa16.29■□□□□ 0.2
HDAC4-206ENST00000460235 NRAPQ86VF7 1730 aa16.28■□□□□ 0.2
HDAC4-206ENST00000460235 A0A0G2JS52 829 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms