RNA–Protein interactions for RNA: ENST00000459783.5

MRPL55-223, Transcript of mitochondrial ribosomal protein L55, human

TSL 5 BASIC

Gene MRPL55, Length 694 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-223	ENST00000459783	CGNL1	Q0VF96	1302 aa		14.15	□□□□□ -0.14
MRPL55-223	ENST00000459783	MAP3K19	Q56UN5	1328 aa		14.15	□□□□□ -0.14
MRPL55-223	ENST00000459783	CDK12	Q9NYV4	1490 aa	Predicted RBP	14.15	□□□□□ -0.14
MRPL55-223	ENST00000459783	AMER1	Q5JTC6	1135 aa	Predicted RBP	14.15	□□□□□ -0.14
MRPL55-223	ENST00000459783	LARP1	Q6PKG0	1096 aa	Known RBP	14.15	□□□□□ -0.14
MRPL55-223	ENST00000459783	STRN4	Q9NRL3	753 aa		14.15	□□□□□ -0.14
MRPL55-223	ENST00000459783	ABCC6	O95255	1503 aa		14.15	□□□□□ -0.14
MRPL55-223	ENST00000459783	SPATA31A5	Q5VU36	1347 aa		14.15	□□□□□ -0.15
MRPL55-223	ENST00000459783	SPATA31A7	Q8IWB4	1347 aa		14.15	□□□□□ -0.15
MRPL55-223	ENST00000459783	RRS1	Q15050	365 aa	Known RBP	14.14	□□□□□ -0.15
MRPL55-223	ENST00000459783	PEAK1	Q9H792	1746 aa		14.14	□□□□□ -0.15
MRPL55-223	ENST00000459783	LTN1	O94822	1766 aa		14.14	□□□□□ -0.15
MRPL55-223	ENST00000459783	SPATA31A1	Q5TZJ5	1347 aa		14.13	□□□□□ -0.15
MRPL55-223	ENST00000459783	ANKRD26	Q9UPS8	1709 aa		14.12	□□□□□ -0.15
MRPL55-223	ENST00000459783	RGPD5	Q99666	1765 aa		14.12	□□□□□ -0.15
MRPL55-223	ENST00000459783	EMILIN1	Q9Y6C2	1016 aa		14.12	□□□□□ -0.15
MRPL55-223	ENST00000459783	ONECUT3	O60422	494 aa	Predicted RBP	14.11	□□□□□ -0.15
MRPL55-223	ENST00000459783	HOXC9	P31274	260 aa		14.11	□□□□□ -0.15
MRPL55-223	ENST00000459783	IP6K1	Q92551	441 aa		14.11	□□□□□ -0.15
MRPL55-223	ENST00000459783	CCDC9	Q9Y3X0	531 aa	Known RBP	14.11	□□□□□ -0.15
MRPL55-223	ENST00000459783	ERBB3	P21860	1342 aa		14.11	□□□□□ -0.15
MRPL55-223	ENST00000459783	WDR17	Q8IZU2	1322 aa		14.11	□□□□□ -0.15
MRPL55-223	ENST00000459783	NSD2	O96028	1365 aa		14.1	□□□□□ -0.15
MRPL55-223	ENST00000459783	KNSTRN	Q9Y448	316 aa		14.1	□□□□□ -0.15
MRPL55-223	ENST00000459783	THSD7A	Q9UPZ6	1657 aa		14.1	□□□□□ -0.15
MRPL55-223	ENST00000459783	CRB1	P82279	1406 aa		14.09	□□□□□ -0.15
MRPL55-223	ENST00000459783	TNNT2	P45379	298 aa	Predicted RBP	14.09	□□□□□ -0.15
MRPL55-223	ENST00000459783	EVA1C	P58658	441 aa		14.09	□□□□□ -0.15
MRPL55-223	ENST00000459783	FAM98C	Q17RN3	349 aa	Known RBP	14.09	□□□□□ -0.15
MRPL55-223	ENST00000459783	POLK	Q9UBT6	870 aa		14.09	□□□□□ -0.15
MRPL55-223	ENST00000459783	RTL1	A6NKG5	1358 aa		14.09	□□□□□ -0.15
MRPL55-223	ENST00000459783	BLM	P54132	1417 aa	Predicted RBP	14.08	□□□□□ -0.15
MRPL55-223	ENST00000459783	USP35	Q9P2H5	1018 aa		14.08	□□□□□ -0.16
MRPL55-223	ENST00000459783	NPC1L1	Q9UHC9	1359 aa		14.08	□□□□□ -0.16
MRPL55-223	ENST00000459783	HSP90AB2P	Q58FF8	381 aa		14.07	□□□□□ -0.16
MRPL55-223	ENST00000459783	CC2D1B	Q5T0F9	858 aa	Known RBP	14.07	□□□□□ -0.16
MRPL55-223	ENST00000459783	SEPT12	Q8IYM1	358 aa		14.07	□□□□□ -0.16
MRPL55-223	ENST00000459783	ANKRD24	Q8TF21	1146 aa		14.07	□□□□□ -0.16
MRPL55-223	ENST00000459783	SMG6	Q86US8	1419 aa	Known RBP	14.07	□□□□□ -0.16
MRPL55-223	ENST00000459783	AMPH	P49418	695 aa		14.06	□□□□□ -0.16
MRPL55-223	ENST00000459783	TOM1L2	Q6ZVM7	507 aa		14.06	□□□□□ -0.16
MRPL55-223	ENST00000459783	TCP11L2	Q8N4U5	519 aa		14.06	□□□□□ -0.16
MRPL55-223	ENST00000459783	FLT4	P35916	1363 aa		14.06	□□□□□ -0.16
MRPL55-223	ENST00000459783	DISP2	A7MBM2	1401 aa		14.06	□□□□□ -0.16
MRPL55-223	ENST00000459783	BARGIN	Q6ZT62	677 aa		14.05	□□□□□ -0.16
MRPL55-223	ENST00000459783	MORC1	Q86VD1	984 aa		14.05	□□□□□ -0.16
MRPL55-223	ENST00000459783	LTV1	Q96GA3	475 aa	Predicted RBP	14.05	□□□□□ -0.16
MRPL55-223	ENST00000459783	CARD10	Q9BWT7	1032 aa		14.05	□□□□□ -0.16
MRPL55-223	ENST00000459783	INSR	P06213	1382 aa		14.05	□□□□□ -0.16
MRPL55-223	ENST00000459783	KIF24	Q5T7B8	1368 aa		14.05	□□□□□ -0.16
MRPL55-223	ENST00000459783	BRWD3	Q6RI45	1802 aa		14.04	□□□□□ -0.16
MRPL55-223	ENST00000459783	CSB-PGBD3	P0DP91	1061 aa		14.04	□□□□□ -0.16
MRPL55-223	ENST00000459783	FAM208A	Q9UK61	1670 aa	Known RBP	14.04	□□□□□ -0.16
MRPL55-223	ENST00000459783	DDX10	Q13206	875 aa	Known RBP	14.03	□□□□□ -0.16
MRPL55-223	ENST00000459783	CNGB1	Q14028	1251 aa	Predicted RBP	14.03	□□□□□ -0.16
MRPL55-223	ENST00000459783	NLRP2	Q9NX02	1062 aa		14.03	□□□□□ -0.16
MRPL55-223	ENST00000459783	WNK3	Q9BYP7	1800 aa		14.02	□□□□□ -0.16
MRPL55-223	ENST00000459783	PPM1G	O15355	546 aa	Predicted RBP	14.02	□□□□□ -0.17
MRPL55-223	ENST00000459783	NBPF6	Q5VWK0	638 aa		14.02	□□□□□ -0.17
MRPL55-223	ENST00000459783	NBPF4	Q96M43	638 aa		14.02	□□□□□ -0.17
MRPL55-223	ENST00000459783	THRAP3	Q9Y2W1	955 aa	Known RBP	14.02	□□□□□ -0.17
MRPL55-223	ENST00000459783	MAP2	P11137	1827 aa	Known RBP	14.01	□□□□□ -0.17
MRPL55-223	ENST00000459783	RGPD2	P0DJD1	1756 aa		14.01	□□□□□ -0.17
MRPL55-223	ENST00000459783	LRRC37A3	O60309	1634 aa		14.01	□□□□□ -0.17
MRPL55-223	ENST00000459783	FAM182B	Q5T319	152 aa		14.01	□□□□□ -0.17
MRPL55-223	ENST00000459783	NCAPD2	Q15021	1401 aa		14	□□□□□ -0.17
MRPL55-223	ENST00000459783		A0A0G2JS52	829 aa		14	□□□□□ -0.17
MRPL55-223	ENST00000459783	MYT1	Q01538	1121 aa		14	□□□□□ -0.17
MRPL55-223	ENST00000459783	USHBP1	Q8N6Y0	703 aa		14	□□□□□ -0.17
MRPL55-223	ENST00000459783	PARP4	Q9UKK3	1724 aa	Known RBP	14	□□□□□ -0.17
MRPL55-223	ENST00000459783	EIF4A2	Q14240	407 aa	Known RBP	13.99	□□□□□ -0.17
MRPL55-223	ENST00000459783	MEGF6	O75095	1541 aa		13.99	□□□□□ -0.17
MRPL55-223	ENST00000459783	MTHFS	P49914	203 aa		13.98	□□□□□ -0.17
MRPL55-223	ENST00000459783	KRT27	Q7Z3Y8	459 aa		13.98	□□□□□ -0.17
MRPL55-223	ENST00000459783	COL3A1	P02461	1466 aa	Predicted RBP	13.98	□□□□□ -0.17
MRPL55-223	ENST00000459783	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.97	□□□□□ -0.17
MRPL55-223	ENST00000459783	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.97	□□□□□ -0.17
MRPL55-223	ENST00000459783	EYA1	Q99502	592 aa		13.97	□□□□□ -0.17
MRPL55-223	ENST00000459783	PARD3	Q8TEW0	1356 aa		13.96	□□□□□ -0.17
MRPL55-223	ENST00000459783	TNS2	Q63HR2	1409 aa		13.96	□□□□□ -0.18
MRPL55-223	ENST00000459783	IL2RB	P14784	551 aa		13.95	□□□□□ -0.18
MRPL55-223	ENST00000459783	PPP2R1A	P30153	589 aa		13.95	□□□□□ -0.18
MRPL55-223	ENST00000459783	IL13	P35225	146 aa		13.95	□□□□□ -0.18
MRPL55-223	ENST00000459783	MARCH10	Q8NA82	808 aa	Predicted RBP	13.95	□□□□□ -0.18
MRPL55-223	ENST00000459783	IGSF1	Q8N6C5	1336 aa		13.94	□□□□□ -0.18
MRPL55-223	ENST00000459783	OVOS2	A0A0G2JMS6	1433 aa		13.94	□□□□□ -0.18
MRPL55-223	ENST00000459783	DDB1	Q16531	1140 aa		13.94	□□□□□ -0.18
MRPL55-223	ENST00000459783	CDCA7	Q9BWT1	371 aa	Predicted RBP	13.94	□□□□□ -0.18
MRPL55-223	ENST00000459783	RGPD1	P0DJD0	1748 aa		13.93	□□□□□ -0.18
MRPL55-223	ENST00000459783	SRCAP	Q6ZRS2	3230 aa		13.93	□□□□□ -0.18
MRPL55-223	ENST00000459783	SHANK3	Q9BYB0	1731 aa		13.93	□□□□□ -0.18
MRPL55-223	ENST00000459783	AEBP1	Q8IUX7	1158 aa		13.92	□□□□□ -0.18
MRPL55-223	ENST00000459783	PDE3B	Q13370	1112 aa		13.91	□□□□□ -0.18
MRPL55-223	ENST00000459783	EXOC5	O00471	708 aa		13.9	□□□□□ -0.18
MRPL55-223	ENST00000459783	PTF1A	Q7RTS3	328 aa		13.9	□□□□□ -0.18
MRPL55-223	ENST00000459783	BCL9	O00512	1426 aa		13.89	□□□□□ -0.19
MRPL55-223	ENST00000459783	KDR	P35968	1356 aa		13.88	□□□□□ -0.19
MRPL55-223	ENST00000459783	RAPGEF4	Q8WZA2	1011 aa		13.88	□□□□□ -0.19
MRPL55-223	ENST00000459783	PKD1L3	Q7Z443	1732 aa		13.87	□□□□□ -0.19
MRPL55-223	ENST00000459783	TNS1	Q9HBL0	1735 aa	Known RBP	13.87	□□□□□ -0.19

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