RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 MEIOBQ8N635 442 aa8.77□□□□□ -1.01
VPS41-209ENST00000457055 ATP1B4Q9UN42 357 aaPredicted RBP8.77□□□□□ -1.01
VPS41-209ENST00000457055 MAN1A2O60476 641 aa8.76□□□□□ -1.01
VPS41-209ENST00000457055 ERFEQ4G0M1 354 aa8.76□□□□□ -1.01
VPS41-209ENST00000457055 CCDC116Q8IYX3 515 aa8.76□□□□□ -1.01
VPS41-209ENST00000457055 LRRN4Q8WUT4 740 aa8.76□□□□□ -1.01
VPS41-209ENST00000457055 DDRGK1Q96HY6 314 aa8.76□□□□□ -1.01
VPS41-209ENST00000457055 ERBB4Q15303 1308 aa8.76□□□□□ -1.01
VPS41-209ENST00000457055 ARHGAP9Q9BRR9 750 aa8.75□□□□□ -1.01
VPS41-209ENST00000457055 FAM117AQ9C073 453 aa8.75□□□□□ -1.01
VPS41-209ENST00000457055 FKBPLQ9UIM3 349 aa8.75□□□□□ -1.01
VPS41-209ENST00000457055 EMILIN1Q9Y6C2 1016 aa8.75□□□□□ -1.01
VPS41-209ENST00000457055 FBXO31Q5XUX0 539 aaPredicted RBP8.74□□□□□ -1.01
VPS41-209ENST00000457055 PROCA1Q8NCQ7 364 aaPredicted RBP8.74□□□□□ -1.01
VPS41-209ENST00000457055 GTF3C3Q9Y5Q9 886 aa8.74□□□□□ -1.01
VPS41-209ENST00000457055 NR6A1Q15406 480 aa8.73□□□□□ -1.01
VPS41-209ENST00000457055 PDXDC2PQ6P474 469 aa8.73□□□□□ -1.01
VPS41-209ENST00000457055 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.73□□□□□ -1.01
VPS41-209ENST00000457055 PPP2R2DQ66LE6 453 aa8.72□□□□□ -1.01
VPS41-209ENST00000457055 SLC10A4Q96EP9 437 aa8.72□□□□□ -1.01
VPS41-209ENST00000457055 TSEN34Q9BSV6 310 aaKnown RBP8.72□□□□□ -1.01
VPS41-209ENST00000457055 FAM181BA6NEQ2 426 aa8.71□□□□□ -1.02
VPS41-209ENST00000457055 AP1G2O75843 785 aa8.71□□□□□ -1.02
VPS41-209ENST00000457055 ZBTB33Q86T24 672 aa8.71□□□□□ -1.02
VPS41-209ENST00000457055 ZSCAN1Q8NBB4 408 aa8.71□□□□□ -1.02
VPS41-209ENST00000457055 ZC3H4Q9UPT8 1303 aaKnown RBP8.71□□□□□ -1.02
VPS41-209ENST00000457055 PPP1R26Q5T8A7 1209 aaPredicted RBP8.7□□□□□ -1.02
VPS41-209ENST00000457055 PGPEP1Q9NXJ5 209 aa8.7□□□□□ -1.02
VPS41-209ENST00000457055 CDV3Q9UKY7 258 aaKnown RBP8.7□□□□□ -1.02
VPS41-209ENST00000457055 SOS2Q07890 1332 aaPredicted RBP8.7□□□□□ -1.02
VPS41-209ENST00000457055 VSIG8P0DPA2 414 aa8.69□□□□□ -1.02
VPS41-209ENST00000457055 KCTD15Q96SI1 283 aaPredicted RBP8.69□□□□□ -1.02
VPS41-209ENST00000457055 DNMT3LQ9UJW3 386 aa8.69□□□□□ -1.02
VPS41-209ENST00000457055 LORP23490 312 aaPredicted RBP8.68□□□□□ -1.02
VPS41-209ENST00000457055 PTK2Q05397 1052 aa8.68□□□□□ -1.02
VPS41-209ENST00000457055 PPFIA3O75145 1194 aa8.67□□□□□ -1.02
VPS41-209ENST00000457055 DHX9Q08211 1270 aaKnown RBP8.67□□□□□ -1.02
VPS41-209ENST00000457055 CBLBQ13191 982 aa8.67□□□□□ -1.02
VPS41-209ENST00000457055 TTLL8A6PVC2 850 aa8.66□□□□□ -1.02
VPS41-209ENST00000457055 USP17L8P0C7I0 530 aa8.66□□□□□ -1.02
VPS41-209ENST00000457055 INTS6LQ5JSJ4 861 aaKnown RBP8.66□□□□□ -1.02
VPS41-209ENST00000457055 Q6ZVU0 165 aa8.66□□□□□ -1.02
VPS41-209ENST00000457055 NPM2Q86SE8 214 aaKnown RBP8.66□□□□□ -1.02
VPS41-209ENST00000457055 PNMA1Q8ND90 353 aa8.66□□□□□ -1.02
VPS41-209ENST00000457055 OCSTAMPQ9BR26 566 aa8.66□□□□□ -1.02
VPS41-209ENST00000457055 GPSM3Q9Y4H4 160 aa8.66□□□□□ -1.02
VPS41-209ENST00000457055 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.65□□□□□ -1.02
VPS41-209ENST00000457055 ADAM32Q8TC27 787 aa8.65□□□□□ -1.02
VPS41-209ENST00000457055 EPS8L1Q8TE68 723 aa8.65□□□□□ -1.02
VPS41-209ENST00000457055 HMX1Q9NP08 348 aaPredicted RBP8.65□□□□□ -1.02
VPS41-209ENST00000457055 SPINT1O43278 529 aa8.63□□□□□ -1.03
VPS41-209ENST00000457055 NBPF20Q3BBV1 942 aa8.63□□□□□ -1.03
VPS41-209ENST00000457055 FIGNL2A6NMB9 653 aa8.62□□□□□ -1.03
VPS41-209ENST00000457055 RFC5P40937 340 aa8.62□□□□□ -1.03
VPS41-209ENST00000457055 RAB15P59190 212 aa8.61□□□□□ -1.03
VPS41-209ENST00000457055 PTSQ03393 145 aa8.61□□□□□ -1.03
VPS41-209ENST00000457055 AGBL1Q96MI9 1066 aa8.61□□□□□ -1.03
VPS41-209ENST00000457055 RELBQ01201 579 aa8.6□□□□□ -1.03
VPS41-209ENST00000457055 DZIP3Q86Y13 1208 aaKnown RBP8.6□□□□□ -1.03
VPS41-209ENST00000457055 PCMTD1Q96MG8 357 aaPredicted RBP8.59□□□□□ -1.03
VPS41-209ENST00000457055 TMPRSS4Q9NRS4 437 aa8.59□□□□□ -1.03
VPS41-209ENST00000457055 ZNF784Q8NCA9 323 aaPredicted RBP8.58□□□□□ -1.04
VPS41-209ENST00000457055 POLMQ9NP87 494 aaPredicted RBP8.58□□□□□ -1.04
VPS41-209ENST00000457055 CTSOP43234 321 aaPredicted RBP8.57□□□□□ -1.04
VPS41-209ENST00000457055 CCDC155Q8N6L0 562 aa8.57□□□□□ -1.04
VPS41-209ENST00000457055 INSM2Q96T92 566 aaPredicted RBP8.57□□□□□ -1.04
VPS41-209ENST00000457055 GOPCQ9HD26 462 aa8.57□□□□□ -1.04
VPS41-209ENST00000457055 ERVH48-1M5A8F1 160 aa8.56□□□□□ -1.04
VPS41-209ENST00000457055 TRIM34Q9BYJ4 488 aa8.56□□□□□ -1.04
VPS41-209ENST00000457055 ZNF395Q9H8N7 513 aaPredicted RBP8.56□□□□□ -1.04
VPS41-209ENST00000457055 ADH1AP07327 375 aa8.55□□□□□ -1.04
VPS41-209ENST00000457055 NEUROD2Q15784 382 aa8.55□□□□□ -1.04
VPS41-209ENST00000457055 TMEM259Q4ZIN3 620 aa8.55□□□□□ -1.04
VPS41-209ENST00000457055 GPR161Q8N6U8 529 aaKnown RBP8.55□□□□□ -1.04
VPS41-209ENST00000457055 SLC35F4A4IF30 521 aa8.54□□□□□ -1.04
VPS41-209ENST00000457055 ESPNB1AK53 854 aa8.54□□□□□ -1.04
VPS41-209ENST00000457055 CNTNAP3BQ96NU0 1288 aa8.54□□□□□ -1.04
VPS41-209ENST00000457055 CNTNAP3Q9BZ76 1288 aa8.54□□□□□ -1.04
VPS41-209ENST00000457055 LILRA1O75019 489 aa8.53□□□□□ -1.04
VPS41-209ENST00000457055 ADD1P35611 737 aaKnown RBP8.53□□□□□ -1.04
VPS41-209ENST00000457055 KRT76Q01546 638 aa8.53□□□□□ -1.04
VPS41-209ENST00000457055 C14orf37Q86TY3 774 aa8.53□□□□□ -1.04
VPS41-209ENST00000457055 RNF217Q8TC41 542 aa8.53□□□□□ -1.04
VPS41-209ENST00000457055 SEPT12Q8IYM1 358 aa8.52□□□□□ -1.05
VPS41-209ENST00000457055 IL27Q8NEV9 243 aa8.52□□□□□ -1.05
VPS41-209ENST00000457055 NANOS1Q8WY41 292 aaKnown RBP8.52□□□□□ -1.05
VPS41-209ENST00000457055 CYLDQ9NQC7 956 aa8.52□□□□□ -1.05
VPS41-209ENST00000457055 CDC14CA4D256 554 aa8.51□□□□□ -1.05
VPS41-209ENST00000457055 ZBBXA8MT70 800 aa8.51□□□□□ -1.05
VPS41-209ENST00000457055 ITGA6P23229 1130 aa8.51□□□□□ -1.05
VPS41-209ENST00000457055 PTGIRP43119 386 aa8.51□□□□□ -1.05
VPS41-209ENST00000457055 TMEM132AQ24JP5 1023 aa8.51□□□□□ -1.05
VPS41-209ENST00000457055 COL25A1Q9BXS0 654 aaPredicted RBP8.51□□□□□ -1.05
VPS41-209ENST00000457055 PCDHB9Q9Y5E1 797 aa8.51□□□□□ -1.05
VPS41-209ENST00000457055 FOXD4L5Q5VV16 416 aaPredicted RBP8.5□□□□□ -1.05
VPS41-209ENST00000457055 TRIM52Q96A61 297 aa8.5□□□□□ -1.05
VPS41-209ENST00000457055 FBXO45P0C2W1 286 aa8.49□□□□□ -1.05
VPS41-209ENST00000457055 VWA5B2Q8N398 1253 aa8.49□□□□□ -1.05
VPS41-209ENST00000457055 KDF1Q8NAX2 398 aaPredicted RBP8.49□□□□□ -1.05
VPS41-209ENST00000457055 GJD4Q96KN9 370 aaPredicted RBP8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms