RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 NBPF14Q5TI25 921 aa9.21□□□□□ -0.94
VPS29-202ENST00000447578 PSMG3-AS1Q96PY0 264 aa9.21□□□□□ -0.94
VPS29-202ENST00000447578 CARD14Q9BXL6 1004 aa9.21□□□□□ -0.94
VPS29-202ENST00000447578 FAM117AQ9C073 453 aa9.21□□□□□ -0.94
VPS29-202ENST00000447578 FSHRP23945 695 aa9.2□□□□□ -0.94
VPS29-202ENST00000447578 VASH1Q7L8A9 365 aaPredicted RBP9.2□□□□□ -0.94
VPS29-202ENST00000447578 KRTAP9-2Q9BYQ4 174 aa9.2□□□□□ -0.94
VPS29-202ENST00000447578 KDM4CQ9H3R0 1056 aa9.2□□□□□ -0.94
VPS29-202ENST00000447578 SKIV2LQ15477 1246 aaKnown RBP9.19□□□□□ -0.94
VPS29-202ENST00000447578 ATP1B4Q9UN42 357 aaPredicted RBP9.19□□□□□ -0.94
VPS29-202ENST00000447578 ERFEQ4G0M1 354 aa9.17□□□□□ -0.94
VPS29-202ENST00000447578 TRMT44Q8IYL2 757 aaKnown RBP9.17□□□□□ -0.94
VPS29-202ENST00000447578 BMP2P12643 396 aa9.16□□□□□ -0.94
VPS29-202ENST00000447578 NR6A1Q15406 480 aa9.16□□□□□ -0.94
VPS29-202ENST00000447578 SH3D19Q5HYK7 790 aa9.16□□□□□ -0.94
VPS29-202ENST00000447578 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.16□□□□□ -0.94
VPS29-202ENST00000447578 MAP4K5Q9Y4K4 846 aa9.16□□□□□ -0.94
VPS29-202ENST00000447578 KRTAP9-6A0A140TA67 174 aa9.15□□□□□ -0.94
VPS29-202ENST00000447578 MAN1A2O60476 641 aa9.15□□□□□ -0.94
VPS29-202ENST00000447578 ADAM23O75077 832 aa9.15□□□□□ -0.94
VPS29-202ENST00000447578 LINC00528Q8N1L1 170 aa9.15□□□□□ -0.94
VPS29-202ENST00000447578 MEIOBQ8N635 442 aa9.15□□□□□ -0.94
VPS29-202ENST00000447578 CCDC116Q8IYX3 515 aa9.14□□□□□ -0.95
VPS29-202ENST00000447578 GPKOWQ92917 476 aaPredicted RBP eCLIP9.14□□□□□ -0.95
VPS29-202ENST00000447578 FKBPLQ9UIM3 349 aa9.14□□□□□ -0.95
VPS29-202ENST00000447578 AP1G2O75843 785 aa9.13□□□□□ -0.95
VPS29-202ENST00000447578 UPP2O95045 317 aa9.13□□□□□ -0.95
VPS29-202ENST00000447578 PDXDC2PQ6P474 469 aa9.13□□□□□ -0.95
VPS29-202ENST00000447578 EPS8L1Q8TE68 723 aa9.13□□□□□ -0.95
VPS29-202ENST00000447578 ARHGAP9Q9BRR9 750 aa9.13□□□□□ -0.95
VPS29-202ENST00000447578 IRS1P35568 1242 aa9.12□□□□□ -0.95
VPS29-202ENST00000447578 CBLBQ13191 982 aa9.12□□□□□ -0.95
VPS29-202ENST00000447578 PPP1R26Q5T8A7 1209 aaPredicted RBP9.12□□□□□ -0.95
VPS29-202ENST00000447578 PPP2R2DQ66LE6 453 aa9.12□□□□□ -0.95
VPS29-202ENST00000447578 KANK3Q6NY19 840 aa9.12□□□□□ -0.95
VPS29-202ENST00000447578 DDRGK1Q96HY6 314 aa9.12□□□□□ -0.95
VPS29-202ENST00000447578 OCSTAMPQ9BR26 566 aa9.12□□□□□ -0.95
VPS29-202ENST00000447578 EMILIN1Q9Y6C2 1016 aa9.12□□□□□ -0.95
VPS29-202ENST00000447578 DNMT3LQ9UJW3 386 aa9.11□□□□□ -0.95
VPS29-202ENST00000447578 SOS2Q07890 1332 aaPredicted RBP9.1□□□□□ -0.95
VPS29-202ENST00000447578 ZBTB33Q86T24 672 aa9.1□□□□□ -0.95
VPS29-202ENST00000447578 KRTAP1-3Q8IUG1 177 aa9.1□□□□□ -0.95
VPS29-202ENST00000447578 BCANQ96GW7 911 aa9.1□□□□□ -0.95
VPS29-202ENST00000447578 PPFIA3O75145 1194 aa9.09□□□□□ -0.95
VPS29-202ENST00000447578 SLC10A4Q96EP9 437 aa9.09□□□□□ -0.95
VPS29-202ENST00000447578 KCTD15Q96SI1 283 aaPredicted RBP9.09□□□□□ -0.95
VPS29-202ENST00000447578 TSEN34Q9BSV6 310 aaKnown RBP9.09□□□□□ -0.95
VPS29-202ENST00000447578 HMX1Q9NP08 348 aaPredicted RBP9.09□□□□□ -0.95
VPS29-202ENST00000447578 ADAM32Q8TC27 787 aa9.07□□□□□ -0.96
VPS29-202ENST00000447578 FIGNL2A6NMB9 653 aa9.06□□□□□ -0.96
VPS29-202ENST00000447578 PTK2Q05397 1052 aa9.06□□□□□ -0.96
VPS29-202ENST00000447578 INTS6LQ5JSJ4 861 aaKnown RBP9.06□□□□□ -0.96
VPS29-202ENST00000447578 PGPEP1Q9NXJ5 209 aa9.06□□□□□ -0.96
VPS29-202ENST00000447578 TTLL8A6PVC2 850 aa9.05□□□□□ -0.96
VPS29-202ENST00000447578 USP17L8P0C7I0 530 aa9.05□□□□□ -0.96
VPS29-202ENST00000447578 Q6ZVU0 165 aa9.05□□□□□ -0.96
VPS29-202ENST00000447578 AGBL1Q96MI9 1066 aa9.05□□□□□ -0.96
VPS29-202ENST00000447578 CNTNAP3BQ96NU0 1288 aa9.05□□□□□ -0.96
VPS29-202ENST00000447578 CNTNAP3Q9BZ76 1288 aa9.05□□□□□ -0.96
VPS29-202ENST00000447578 ZC3H4Q9UPT8 1303 aaKnown RBP9.05□□□□□ -0.96
VPS29-202ENST00000447578 SVOPQ8N4V2 548 aa9.04□□□□□ -0.96
VPS29-202ENST00000447578 RFC5P40937 340 aa9.03□□□□□ -0.96
VPS29-202ENST00000447578 RAB15P59190 212 aa9.03□□□□□ -0.96
VPS29-202ENST00000447578 KRT76Q01546 638 aa9.03□□□□□ -0.96
VPS29-202ENST00000447578 ZNF385CQ66K41 422 aaPredicted RBP9.03□□□□□ -0.96
VPS29-202ENST00000447578 TMPRSS4Q9NRS4 437 aa9.03□□□□□ -0.96
VPS29-202ENST00000447578 CDV3Q9UKY7 258 aaKnown RBP9.03□□□□□ -0.96
VPS29-202ENST00000447578 MSTNO14793 375 aa9.02□□□□□ -0.97
VPS29-202ENST00000447578 SPINT1O43278 529 aa9.02□□□□□ -0.97
VPS29-202ENST00000447578 MARSP56192 900 aaKnown RBP9.02□□□□□ -0.97
VPS29-202ENST00000447578 RELBQ01201 579 aa9.02□□□□□ -0.97
VPS29-202ENST00000447578 PTSQ03393 145 aa9.02□□□□□ -0.97
VPS29-202ENST00000447578 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.02□□□□□ -0.97
VPS29-202ENST00000447578 SCARF2Q96GP6 870 aaPredicted RBP9.02□□□□□ -0.97
VPS29-202ENST00000447578 DHX9Q08211 1270 aaKnown RBP9.01□□□□□ -0.97
VPS29-202ENST00000447578 GPSM3Q9Y4H4 160 aa9.01□□□□□ -0.97
VPS29-202ENST00000447578 CTSOP43234 321 aaPredicted RBP9□□□□□ -0.97
VPS29-202ENST00000447578 GPR161Q8N6U8 529 aaKnown RBP9□□□□□ -0.97
VPS29-202ENST00000447578 Q8N3U1 123 aa8.99□□□□□ -0.97
VPS29-202ENST00000447578 INSM2Q96T92 566 aaPredicted RBP8.99□□□□□ -0.97
VPS29-202ENST00000447578 TRIM34Q9BYJ4 488 aa8.99□□□□□ -0.97
VPS29-202ENST00000447578 ZNF395Q9H8N7 513 aaPredicted RBP8.99□□□□□ -0.97
VPS29-202ENST00000447578 DZIP3Q86Y13 1208 aaKnown RBP8.98□□□□□ -0.97
VPS29-202ENST00000447578 ZNF784Q8NCA9 323 aaPredicted RBP8.98□□□□□ -0.97
VPS29-202ENST00000447578 IL27Q8NEV9 243 aa8.98□□□□□ -0.97
VPS29-202ENST00000447578 ERVH48-1M5A8F1 160 aa8.97□□□□□ -0.97
VPS29-202ENST00000447578 ADD1P35611 737 aaKnown RBP8.97□□□□□ -0.97
VPS29-202ENST00000447578 NBPF20Q3BBV1 942 aa8.97□□□□□ -0.97
VPS29-202ENST00000447578 CCDC155Q8N6L0 562 aa8.97□□□□□ -0.97
VPS29-202ENST00000447578 PCMTD1Q96MG8 357 aaPredicted RBP8.97□□□□□ -0.97
VPS29-202ENST00000447578 ARHGEF15O94989 841 aa8.96□□□□□ -0.98
VPS29-202ENST00000447578 NEUROD2Q15784 382 aa8.96□□□□□ -0.98
VPS29-202ENST00000447578 PNMA1Q8ND90 353 aa8.96□□□□□ -0.98
VPS29-202ENST00000447578 POLMQ9NP87 494 aaPredicted RBP8.96□□□□□ -0.98
VPS29-202ENST00000447578 LILRA1O75019 489 aa8.95□□□□□ -0.98
VPS29-202ENST00000447578 SPOCK3Q9BQ16 436 aa8.95□□□□□ -0.98
VPS29-202ENST00000447578 SLC35F4A4IF30 521 aa8.94□□□□□ -0.98
VPS29-202ENST00000447578 PLA2G4EQ3MJ16 856 aa8.94□□□□□ -0.98
VPS29-202ENST00000447578 KDF1Q8NAX2 398 aaPredicted RBP8.94□□□□□ -0.98
VPS29-202ENST00000447578 COL25A1Q9BXS0 654 aaPredicted RBP8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms