RNA–Protein interactions for RNA: ENST00000438213.5

CTSD-205, Transcript of cathepsin D, humanhuman

TSL 2

Gene CTSD, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSD-205ENST00000438213 SPATA31A1Q5TZJ5 1347 aa22.5■■□□□ 1.19
CTSD-205ENST00000438213 FAM98CQ17RN3 349 aaKnown RBP22.49■■□□□ 1.19
CTSD-205ENST00000438213 KNSTRNQ9Y448 316 aa22.49■■□□□ 1.19
CTSD-205ENST00000438213 NRAPQ86VF7 1730 aa22.48■■□□□ 1.19
CTSD-205ENST00000438213 A0A0G2JS52 829 aa22.48■■□□□ 1.19
CTSD-205ENST00000438213 CSB-PGBD3P0DP91 1061 aa22.48■■□□□ 1.19
CTSD-205ENST00000438213 MYT1Q01538 1121 aa22.48■■□□□ 1.19
CTSD-205ENST00000438213 USP35Q9P2H5 1018 aa22.48■■□□□ 1.19
CTSD-205ENST00000438213 GLI3P10071 1580 aa22.47■■□□□ 1.19
CTSD-205ENST00000438213 LMO7Q8WWI1 1683 aa22.47■■□□□ 1.19
CTSD-205ENST00000438213 TOM1L2Q6ZVM7 507 aa22.47■■□□□ 1.19
CTSD-205ENST00000438213 TCP11L2Q8N4U5 519 aa22.47■■□□□ 1.19
CTSD-205ENST00000438213 THRAP3Q9Y2W1 955 aaKnown RBP22.47■■□□□ 1.19
CTSD-205ENST00000438213 AMPHP49418 695 aa22.46■■□□□ 1.19
CTSD-205ENST00000438213 IP6K1Q92551 441 aa22.46■■□□□ 1.19
CTSD-205ENST00000438213 CCDC7Q96M83 1385 aa22.46■■□□□ 1.19
CTSD-205ENST00000438213 COL5A2P05997 1499 aaPredicted RBP22.46■■□□□ 1.19
CTSD-205ENST00000438213 BARGINQ6ZT62 677 aa22.45■■□□□ 1.18
CTSD-205ENST00000438213 WASHC2AQ641Q2 1341 aa22.45■■□□□ 1.18
CTSD-205ENST00000438213 WDR17Q8IZU2 1322 aa22.45■■□□□ 1.18
CTSD-205ENST00000438213 FBLN1P23142 703 aa22.44■■□□□ 1.18
CTSD-205ENST00000438213 COL18A1P39060 1754 aa22.43■■□□□ 1.18
CTSD-205ENST00000438213 ABCC6O95255 1503 aa22.43■■□□□ 1.18
CTSD-205ENST00000438213 CRB1P82279 1406 aa22.43■■□□□ 1.18
CTSD-205ENST00000438213 MAP3K19Q56UN5 1328 aa22.43■■□□□ 1.18
CTSD-205ENST00000438213 RRS1Q15050 365 aaKnown RBP22.41■■□□□ 1.18
CTSD-205ENST00000438213 KRT27Q7Z3Y8 459 aa22.41■■□□□ 1.18
CTSD-205ENST00000438213 CARD10Q9BWT7 1032 aa22.41■■□□□ 1.18
CTSD-205ENST00000438213 HOXC9P31274 260 aa22.4■■□□□ 1.18
CTSD-205ENST00000438213 ANKRD24Q8TF21 1146 aa22.4■■□□□ 1.18
CTSD-205ENST00000438213 KIF20BQ96Q89 1820 aa22.4■■□□□ 1.18
CTSD-205ENST00000438213 BLMP54132 1417 aaPredicted RBP22.4■■□□□ 1.18
CTSD-205ENST00000438213 NSD2O96028 1365 aa22.39■■□□□ 1.18
CTSD-205ENST00000438213 NLRP2Q9NX02 1062 aa22.39■■□□□ 1.17
CTSD-205ENST00000438213 ERBB3P21860 1342 aa22.38■■□□□ 1.17
CTSD-205ENST00000438213 MORC1Q86VD1 984 aa22.38■■□□□ 1.17
CTSD-205ENST00000438213 PER1O15534 1290 aaPredicted RBP22.37■■□□□ 1.17
CTSD-205ENST00000438213 UPF1Q92900 1129 aaKnown RBP eCLIP22.37■■□□□ 1.177e-13■■■■□ 25.2
CTSD-205ENST00000438213 LTV1Q96GA3 475 aaPredicted RBP22.37■■□□□ 1.17
CTSD-205ENST00000438213 CDCA7Q9BWT1 371 aaPredicted RBP22.37■■□□□ 1.17
CTSD-205ENST00000438213 KIF24Q5T7B8 1368 aa22.37■■□□□ 1.17
CTSD-205ENST00000438213 LTN1O94822 1766 aa22.36■■□□□ 1.17
CTSD-205ENST00000438213 RTL1A6NKG5 1358 aa22.36■■□□□ 1.17
CTSD-205ENST00000438213 TNNT2P45379 298 aaPredicted RBP22.35■■□□□ 1.17
CTSD-205ENST00000438213 PDE3BQ13370 1112 aa22.35■■□□□ 1.17
CTSD-205ENST00000438213 RGPD5Q99666 1765 aa22.35■■□□□ 1.17
CTSD-205ENST00000438213 PPM1GO15355 546 aaPredicted RBP22.34■■□□□ 1.17
CTSD-205ENST00000438213 AMER1Q5JTC6 1135 aaPredicted RBP22.34■■□□□ 1.17
CTSD-205ENST00000438213 EMILIN1Q9Y6C2 1016 aa22.33■■□□□ 1.17
CTSD-205ENST00000438213 HSP90AB2PQ58FF8 381 aa22.32■■□□□ 1.16
CTSD-205ENST00000438213 CCDC125Q86Z20 511 aa22.32■■□□□ 1.16
CTSD-205ENST00000438213 POLKQ9UBT6 870 aa22.32■■□□□ 1.16
CTSD-205ENST00000438213 FLT4P35916 1363 aa22.32■■□□□ 1.16
CTSD-205ENST00000438213 INSRP06213 1382 aa22.3■■□□□ 1.16
CTSD-205ENST00000438213 DDB1Q16531 1140 aa22.3■■□□□ 1.16
CTSD-205ENST00000438213 EXOC5O00471 708 aa22.29■■□□□ 1.16
CTSD-205ENST00000438213 SMG6Q86US8 1419 aaKnown RBP22.29■■□□□ 1.16
CTSD-205ENST00000438213 THSD7AQ9UPZ6 1657 aa22.28■■□□□ 1.16
CTSD-205ENST00000438213 CC2D1BQ5T0F9 858 aaKnown RBP22.28■■□□□ 1.16
CTSD-205ENST00000438213 BRWD3Q6RI45 1802 aa22.28■■□□□ 1.16
CTSD-205ENST00000438213 IL2RBP14784 551 aa22.27■■□□□ 1.16
CTSD-205ENST00000438213 FAM196AQ6ZSG2 479 aa22.27■■□□□ 1.16
CTSD-205ENST00000438213 NPC1L1Q9UHC9 1359 aa22.25■■□□□ 1.15
CTSD-205ENST00000438213 SF3B2Q13435 895 aaKnown RBP22.25■■□□□ 1.15
CTSD-205ENST00000438213 FAM182BQ5T319 152 aa22.25■■□□□ 1.15
CTSD-205ENST00000438213 ANKRD26Q9UPS8 1709 aa22.25■■□□□ 1.15
CTSD-205ENST00000438213 MAP2P11137 1827 aaKnown RBP22.24■■□□□ 1.15
CTSD-205ENST00000438213 NBPF6Q5VWK0 638 aa22.24■■□□□ 1.15
CTSD-205ENST00000438213 NBPF4Q96M43 638 aa22.24■■□□□ 1.15
CTSD-205ENST00000438213 CNGB1Q14028 1251 aaPredicted RBP22.22■■□□□ 1.15
CTSD-205ENST00000438213 DISP2A7MBM2 1401 aa22.22■■□□□ 1.15
CTSD-205ENST00000438213 FAM208AQ9UK61 1670 aaKnown RBP22.2■■□□□ 1.14
CTSD-205ENST00000438213 PEAK1Q9H792 1746 aa22.2■■□□□ 1.14
CTSD-205ENST00000438213 PARP4Q9UKK3 1724 aaKnown RBP22.2■■□□□ 1.14
CTSD-205ENST00000438213 RAPGEF4Q8WZA2 1011 aa22.19■■□□□ 1.14
CTSD-205ENST00000438213 USHBP1Q8N6Y0 703 aa22.18■■□□□ 1.14
CTSD-205ENST00000438213 MARCH10Q8NA82 808 aaPredicted RBP22.18■■□□□ 1.14
CTSD-205ENST00000438213 MTHFSP49914 203 aa22.17■■□□□ 1.14
CTSD-205ENST00000438213 EIF4A2Q14240 407 aaKnown RBP22.17■■□□□ 1.14
CTSD-205ENST00000438213 TATP17735 454 aaPredicted RBP22.16■■□□□ 1.14
CTSD-205ENST00000438213 EYA1Q99502 592 aa22.16■■□□□ 1.14
CTSD-205ENST00000438213 TRIM37O94972 964 aa22.15■■□□□ 1.14
CTSD-205ENST00000438213 DDX10Q13206 875 aaKnown RBP22.15■■□□□ 1.14
CTSD-205ENST00000438213 ZCRB1Q8TBF4 217 aaKnown RBP22.15■■□□□ 1.14
CTSD-205ENST00000438213 OVOS2A0A0G2JMS6 1433 aa22.14■■□□□ 1.14
CTSD-205ENST00000438213 BAG6P46379 1132 aa22.14■■□□□ 1.13
CTSD-205ENST00000438213 DDX54Q8TDD1 881 aaKnown RBP22.13■■□□□ 1.13
CTSD-205ENST00000438213 TNS2Q63HR2 1409 aa22.13■■□□□ 1.13
CTSD-205ENST00000438213 LRRC37A3O60309 1634 aa22.12■■□□□ 1.13
CTSD-205ENST00000438213 WNK3Q9BYP7 1800 aa22.11■■□□□ 1.13
CTSD-205ENST00000438213 EP400Q96L91 3159 aa22.11■■□□□ 1.13
CTSD-205ENST00000438213 RGPD2P0DJD1 1756 aa22.1■■□□□ 1.13
CTSD-205ENST00000438213 BCL9O00512 1426 aa22.09■■□□□ 1.13
CTSD-205ENST00000438213 APBA3O96018 575 aa22.09■■□□□ 1.13
CTSD-205ENST00000438213 IL13P35225 146 aa22.08■■□□□ 1.13
CTSD-205ENST00000438213 DEFB132Q7Z7B7 95 aa22.08■■□□□ 1.13
CTSD-205ENST00000438213 BCL11BQ9C0K0 894 aaPredicted RBP22.08■■□□□ 1.13
CTSD-205ENST00000438213 IGSF1Q8N6C5 1336 aa22.07■■□□□ 1.12
CTSD-205ENST00000438213 DIAPH1O60610 1272 aaKnown RBP22.07■■□□□ 1.12
CTSD-205ENST00000438213 CFAP53Q96M91 514 aa22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms